Wall clock time and date at job start Thu Apr 9 2020 12:14:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.46842 * 110.98939 * 2 1 4 4 C 1.53042 * 109.51342 * 174.14761 * 3 2 1 5 5 C 1.53120 * 109.27645 * 59.18075 * 4 3 2 6 6 C 1.53117 * 109.16172 * 302.34792 * 5 4 3 7 7 C 1.46844 * 110.99990 * 235.79551 * 2 1 3 8 8 H 1.08997 * 109.46515 * 65.83461 * 7 2 1 9 9 C 1.50700 * 109.46003 * 305.85564 * 7 2 1 10 10 O 1.20821 * 120.00485 * 339.97630 * 9 7 2 11 11 O 1.34233 * 119.99946 * 159.98258 * 9 7 2 12 12 C 1.45196 * 117.00244 * 179.97438 * 11 9 7 13 13 C 1.52998 * 109.47149 * 180.02562 * 12 11 9 14 14 C 1.50706 * 109.47348 * 180.02562 * 13 12 11 15 15 H 1.08005 * 119.99758 * 359.97438 * 14 13 12 16 16 C 1.37871 * 120.00102 * 179.97438 * 14 13 12 17 17 N 1.31516 * 120.00217 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 119.99766 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.47057 * 179.97438 * 18 16 14 20 20 H 1.48500 * 109.47389 * 300.00068 * 18 16 14 21 21 H 1.48504 * 109.47102 * 60.00417 * 18 16 14 22 22 H 1.08996 * 109.47120 * 184.20191 * 1 2 3 23 23 H 1.09001 * 109.47432 * 304.20614 * 1 2 3 24 24 H 1.09004 * 109.46857 * 64.20917 * 1 2 3 25 25 H 1.08996 * 109.46496 * 54.14010 * 3 2 1 26 26 H 1.09001 * 109.47330 * 294.16364 * 3 2 1 27 27 H 1.09006 * 109.50149 * 299.24535 * 4 3 2 28 28 H 1.09002 * 109.50321 * 179.12590 * 4 3 2 29 29 H 1.09002 * 109.52080 * 182.43969 * 5 4 3 30 30 H 1.09003 * 109.52042 * 62.25149 * 5 4 3 31 31 H 1.08992 * 109.50546 * 297.71083 * 6 5 4 32 32 H 1.09007 * 109.53397 * 177.61253 * 6 5 4 33 33 H 1.09000 * 109.47236 * 60.00122 * 12 11 9 34 34 H 1.09002 * 109.47072 * 299.99703 * 12 11 9 35 35 H 1.09001 * 109.47671 * 60.00226 * 13 12 11 36 36 H 1.09006 * 109.47297 * 299.99945 * 13 12 11 37 37 H 0.97001 * 119.99646 * 359.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9950 1.3710 0.0000 4 6 3.5179 1.3343 0.1471 5 6 4.1188 0.5370 -1.0139 6 6 3.5181 -0.8714 -1.0205 7 6 1.9953 -0.7707 -1.1338 8 1 1.7327 -0.2706 -2.0660 9 6 1.3982 -2.1543 -1.1207 10 8 0.9186 -2.5958 -0.1034 11 8 1.3992 -2.8963 -2.2393 12 6 0.8078 -4.2195 -2.1531 13 6 0.9013 -4.9096 -3.5154 14 6 0.2869 -6.2829 -3.4262 15 1 -0.1283 -6.6289 -2.4912 16 6 0.2549 -7.0973 -4.5382 17 7 0.7610 -6.6761 -5.6767 18 14 -0.5060 -8.7997 -4.4273 19 1 -0.4165 -9.4690 -5.7499 20 1 0.2245 -9.6036 -3.4147 21 1 -1.9317 -8.6797 -4.0294 22 1 -0.3633 -1.0249 0.0753 23 1 -0.3634 0.5777 0.8499 24 1 -0.3633 0.4471 -0.9253 25 1 1.5631 1.9257 0.8329 26 1 1.7324 1.8609 -0.9376 27 1 3.7809 0.8567 1.0910 28 1 3.9097 2.3513 0.1315 29 1 5.1998 0.4715 -0.8898 30 1 3.8889 1.0355 -1.9556 31 1 3.7811 -1.3836 -0.0950 32 1 3.9100 -1.4308 -1.8700 33 1 -0.2386 -4.1315 -1.8611 34 1 1.3441 -4.8095 -1.4099 35 1 1.9479 -4.9978 -3.8071 36 1 0.3653 -4.3198 -4.2591 37 1 1.1565 -5.7923 -5.7341 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000741144950.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:14:34 Heat of formation + Delta-G solvation = -121.566054 kcal Electronic energy + Delta-G solvation = -17605.114706 eV Core-core repulsion = 14766.903286 eV Total energy + Delta-G solvation = -2838.211420 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.94031 -39.71094 -37.71443 -35.86175 -34.53611 -32.74955 -31.81313 -28.05892 -26.84573 -25.31184 -24.02136 -23.37552 -22.01936 -20.74340 -19.24848 -18.53926 -17.80224 -17.64870 -16.44672 -16.16174 -15.67436 -15.51824 -15.42091 -15.26185 -14.57351 -14.23559 -14.06892 -13.84201 -13.65751 -13.42816 -13.04461 -12.79362 -12.51958 -12.46551 -12.17740 -12.03537 -11.89132 -11.67506 -11.60667 -11.40907 -11.22265 -10.85843 -10.61945 -9.47173 -8.79294 -6.51908 1.01607 1.46733 1.55092 1.61300 1.81598 2.53550 2.77384 3.07761 3.49037 3.67383 3.85611 3.94979 4.02145 4.05927 4.08909 4.19998 4.35468 4.42517 4.48362 4.52786 4.69488 4.74749 4.88678 4.93024 4.98047 4.99318 5.13142 5.15614 5.19294 5.41401 5.42821 5.74794 5.80634 5.99524 6.04508 6.42868 6.64563 7.30390 8.62645 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.049454 B = 0.004369 C = 0.004169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 566.042632 B = 6407.300110 C = 6714.477885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 N -0.539 5.539 3 C 0.055 3.945 4 C -0.117 4.117 5 C -0.113 4.113 6 C -0.109 4.109 7 C 0.102 3.898 8 H 0.084 0.916 9 C 0.454 3.546 10 O -0.521 6.521 11 O -0.367 6.367 12 C 0.098 3.902 13 C 0.016 3.984 14 C -0.628 4.628 15 H 0.056 0.944 16 C -0.030 4.030 17 N -0.929 5.929 18 Si 1.123 2.877 19 H -0.279 1.279 20 H -0.267 1.267 21 H -0.268 1.268 22 H 0.053 0.947 23 H 0.092 0.908 24 H 0.032 0.968 25 H 0.095 0.905 26 H 0.046 0.954 27 H 0.065 0.935 28 H 0.096 0.904 29 H 0.087 0.913 30 H 0.074 0.926 31 H 0.066 0.934 32 H 0.077 0.923 33 H 0.058 0.942 34 H 0.058 0.942 35 H 0.005 0.995 36 H 0.004 0.996 37 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.748 17.898 10.180 21.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 N -0.266 5.266 3 C -0.072 4.072 4 C -0.155 4.155 5 C -0.151 4.151 6 C -0.147 4.147 7 C -0.008 4.008 8 H 0.102 0.898 9 C 0.298 3.702 10 O -0.410 6.410 11 O -0.283 6.283 12 C 0.025 3.975 13 C -0.021 4.021 14 C -0.665 4.665 15 H 0.074 0.926 16 C -0.228 4.228 17 N -0.565 5.565 18 Si 0.942 3.058 19 H -0.205 1.205 20 H -0.192 1.192 21 H -0.193 1.193 22 H 0.072 0.928 23 H 0.111 0.889 24 H 0.051 0.949 25 H 0.113 0.887 26 H 0.064 0.936 27 H 0.084 0.916 28 H 0.115 0.885 29 H 0.106 0.894 30 H 0.092 0.908 31 H 0.085 0.915 32 H 0.096 0.904 33 H 0.076 0.924 34 H 0.077 0.923 35 H 0.023 0.977 36 H 0.022 0.978 37 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 4.422 16.165 10.025 19.528 hybrid contribution -0.174 1.450 0.109 1.464 sum 4.247 17.614 10.133 20.760 Atomic orbital electron populations 1.22571 0.86682 1.02590 1.01676 1.61712 1.08517 1.15277 1.41123 1.22310 0.96614 0.86261 1.01986 1.21662 0.93350 1.01602 0.98847 1.21590 1.01059 0.92796 0.99623 1.21623 0.89393 1.00557 1.03095 1.21326 0.97483 0.86558 0.95408 0.89801 1.24299 0.76073 0.89039 0.80826 1.90588 1.43373 1.73031 1.33964 1.86504 1.73659 1.29796 1.38374 1.22972 0.96679 0.78121 0.99776 1.19148 0.96396 0.94962 0.91628 1.22224 1.43476 1.01032 0.99783 0.92597 1.27528 0.95326 1.08516 0.91469 1.70908 1.37325 1.20808 1.27435 0.82877 0.76383 0.69946 0.76575 1.20455 1.19244 1.19274 0.92815 0.88900 0.94920 0.88669 0.93624 0.91586 0.88516 0.89401 0.90756 0.91530 0.90393 0.92362 0.92315 0.97661 0.97790 0.93284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.31 9.10 127.69 1.16 1.47 16 2 N -0.54 -13.15 4.51 -901.61 -4.06 -17.22 16 3 C 0.05 0.89 5.46 86.33 0.47 1.36 16 4 C -0.12 -1.59 6.09 30.65 0.19 -1.40 16 5 C -0.11 -1.70 6.00 30.67 0.18 -1.52 16 6 C -0.11 -2.45 5.36 30.65 0.16 -2.29 16 7 C 0.10 2.74 2.35 44.19 0.10 2.85 16 8 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 9 C 0.45 16.67 6.39 71.24 0.46 17.12 16 10 O -0.52 -21.66 14.27 21.98 0.31 -21.35 16 11 O -0.37 -15.26 10.22 -51.44 -0.53 -15.79 16 12 C 0.10 4.57 5.40 71.98 0.39 4.96 16 13 C 0.02 0.86 4.66 29.85 0.14 1.00 16 14 C -0.63 -36.47 9.11 25.60 0.23 -36.23 16 15 H 0.06 3.15 7.74 -2.91 -0.02 3.13 16 16 C -0.03 -1.74 5.46 84.65 0.46 -1.28 16 17 N -0.93 -57.42 13.65 21.45 0.29 -57.13 16 18 Si 1.12 49.88 29.90 68.60 2.05 51.94 16 19 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 20 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 21 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 22 H 0.05 1.68 5.63 -2.39 -0.01 1.66 16 23 H 0.09 1.82 8.09 -2.39 -0.02 1.81 16 24 H 0.03 0.72 8.14 -2.38 -0.02 0.70 16 25 H 0.10 1.28 8.08 -2.39 -0.02 1.26 16 26 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 27 H 0.07 1.03 8.14 -2.38 -0.02 1.01 16 28 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 29 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 30 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 31 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 32 H 0.08 1.79 8.14 -2.38 -0.02 1.77 16 33 H 0.06 2.71 8.13 -2.39 -0.02 2.69 16 34 H 0.06 2.74 8.13 -2.39 -0.02 2.72 16 35 H 0.01 0.29 8.01 -2.39 -0.02 0.27 16 36 H 0.00 0.21 8.01 -2.38 -0.02 0.20 16 37 H 0.26 16.13 7.22 -92.71 -0.67 15.46 16 Total: -1.00 -68.99 301.61 3.14 -65.85 By element: Atomic # 1 Polarization: 6.53 SS G_CDS: 1.12 Total: 7.66 kcal Atomic # 6 Polarization: -17.92 SS G_CDS: 3.95 Total: -13.97 kcal Atomic # 7 Polarization: -70.57 SS G_CDS: -3.77 Total: -74.34 kcal Atomic # 8 Polarization: -36.92 SS G_CDS: -0.21 Total: -37.13 kcal Atomic # 14 Polarization: 49.88 SS G_CDS: 2.05 Total: 51.94 kcal Total: -68.99 3.14 -65.85 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000741144950.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.720 kcal (2) G-P(sol) polarization free energy of solvation -68.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.846 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds