Wall clock time and date at job start Thu Apr 9 2020 12:14:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53002 * 108.82800 * 2 1 4 4 C 1.54172 * 108.85354 * 241.59514 * 2 1 3 5 5 C 1.53815 * 111.97013 * 197.68614 * 4 2 1 6 6 C 1.50822 * 111.62264 * 319.04153 * 5 4 2 7 7 N 1.47632 * 108.05556 * 95.05182 * 6 5 4 8 8 C 1.46899 * 110.99815 * 150.34667 * 7 6 5 9 9 C 1.52998 * 109.47544 * 292.59387 * 8 7 6 10 10 H 1.09002 * 109.46917 * 58.87998 * 9 8 7 11 11 O 1.42901 * 109.47291 * 298.88078 * 9 8 7 12 12 C 1.50701 * 109.47477 * 178.87832 * 9 8 7 13 13 H 1.08002 * 119.99404 * 0.02562 * 12 9 8 14 14 C 1.37872 * 120.00118 * 180.02562 * 12 9 8 15 15 N 1.31512 * 120.00258 * 0.02562 * 14 12 9 16 16 Si 1.86804 * 120.00029 * 179.97438 * 14 12 9 17 17 H 1.48500 * 109.46942 * 89.99896 * 16 14 12 18 18 H 1.48492 * 109.47530 * 209.99971 * 16 14 12 19 19 H 1.48497 * 109.47070 * 330.00241 * 16 14 12 20 20 C 1.39775 * 114.76042 * 277.20406 * 7 6 5 21 21 C 1.50753 * 108.85187 * 118.50923 * 2 1 3 22 22 H 1.09003 * 109.47054 * 301.49484 * 1 2 3 23 23 H 1.09007 * 109.46833 * 61.49258 * 1 2 3 24 24 H 1.08996 * 109.47439 * 181.48916 * 1 2 3 25 25 H 1.09000 * 109.46472 * 161.45030 * 3 2 1 26 26 H 1.09003 * 109.47147 * 281.44733 * 3 2 1 27 27 H 1.08991 * 109.47197 * 41.45386 * 3 2 1 28 28 H 1.09002 * 108.98117 * 318.32320 * 4 2 1 29 29 H 1.09000 * 108.98369 * 77.03684 * 4 2 1 30 30 H 1.08997 * 109.05160 * 79.58626 * 5 4 2 31 31 H 1.09001 * 109.05316 * 198.56158 * 5 4 2 32 32 H 1.09000 * 109.74297 * 335.41786 * 6 5 4 33 33 H 1.08999 * 109.74570 * 214.69929 * 6 5 4 34 34 H 1.09005 * 109.47422 * 172.59299 * 8 7 6 35 35 H 1.09006 * 109.46871 * 52.59875 * 8 7 6 36 36 H 0.96694 * 113.99806 * 299.99559 * 11 9 8 37 37 H 0.96996 * 120.00400 * 180.02562 * 15 14 12 38 38 H 1.09001 * 109.01796 * 182.86029 * 20 7 6 39 39 H 1.08996 * 109.02028 * 301.68145 * 20 7 6 40 40 H 1.08997 * 109.54733 * 93.95741 * 21 2 1 41 41 H 1.08999 * 109.54690 * 333.68038 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0238 1.4482 0.0000 4 6 2.0283 -0.6940 -1.2834 5 6 3.5003 -1.1254 -1.1699 6 6 4.3363 -0.0739 -0.4842 7 7 4.4210 -0.4193 0.9486 8 6 5.6825 0.0571 1.5313 9 6 6.8505 -0.7261 0.9288 10 1 6.8578 -0.5928 -0.1530 11 8 6.7029 -2.1137 1.2367 12 6 8.1468 -0.2186 1.5061 13 1 8.1382 0.5822 2.2307 14 6 9.3435 -0.7766 1.1093 15 7 9.3539 -1.7515 0.2266 16 14 10.9503 -0.1471 1.8245 17 1 11.2823 -0.9176 3.0497 18 1 12.0360 -0.3141 0.8253 19 1 10.8098 1.2910 2.1671 20 6 3.3276 -0.0071 1.7157 21 6 2.0172 -0.6809 1.2537 22 1 -0.3633 0.5369 0.8763 23 1 -0.3633 0.4905 -0.9031 24 1 -0.3634 -1.0273 0.0267 25 1 3.0632 1.4775 0.3269 26 1 1.9481 1.8579 -1.0072 27 1 1.4122 2.0406 0.6803 28 1 1.4143 -1.5749 -1.4713 29 1 1.9240 -0.0057 -2.1220 30 1 3.5565 -2.0523 -0.5993 31 1 3.8984 -1.2986 -2.1697 32 1 3.8671 0.9031 -0.6004 33 1 5.3358 -0.0570 -0.9187 34 1 5.6634 -0.0922 2.6109 35 1 5.8055 1.1181 1.3135 36 1 6.6883 -2.3070 2.1840 37 1 10.1957 -2.1443 -0.0522 38 1 3.5096 -0.2627 2.7596 39 1 3.2207 1.0742 1.6296 40 1 2.2021 -1.7352 1.0477 41 1 1.2637 -0.5875 2.0357 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000809574030.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:14:47 Heat of formation + Delta-G solvation = -28.890684 kcal Electronic energy + Delta-G solvation = -18833.042177 eV Core-core repulsion = 16134.682557 eV Total energy + Delta-G solvation = -2698.359620 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.20612 -36.38314 -34.41828 -32.27548 -32.02072 -29.45590 -27.84727 -27.18032 -25.77432 -24.14856 -22.54684 -20.61488 -19.60409 -18.05290 -16.99357 -15.90401 -15.47059 -14.91971 -14.53846 -14.43532 -13.82998 -13.64810 -13.49154 -12.88978 -12.81373 -12.54686 -12.26597 -11.98347 -11.60775 -11.49257 -11.09455 -11.05673 -10.90608 -10.82974 -10.58717 -10.45660 -10.26508 -10.12945 -10.01192 -9.90175 -9.71580 -8.89283 -8.51811 -8.00720 -7.24683 -5.95956 -4.14214 3.29690 3.36701 3.39102 4.38188 4.59001 4.84029 4.87538 4.93940 5.31464 5.39394 5.44275 5.48272 5.60699 5.63021 5.70959 5.72719 5.86183 5.91823 5.96718 6.01943 6.11607 6.16070 6.24720 6.26580 6.36835 6.41440 6.42845 6.49555 6.61210 6.62879 6.76192 6.86190 6.91169 7.75140 7.83082 7.89858 8.18861 8.26943 8.90303 9.52093 9.69256 11.08037 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.049351 B = 0.005533 C = 0.005382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 567.233685 B = 5059.332818 C = 5201.499049 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.063 4.063 3 C -0.173 4.173 4 C -0.105 4.105 5 C -0.114 4.114 6 C 0.044 3.956 7 N -0.545 5.545 8 C 0.036 3.964 9 C 0.238 3.762 10 H 0.054 0.946 11 O -0.553 6.553 12 C -0.575 4.575 13 H 0.053 0.947 14 C 0.080 3.920 15 N -0.859 5.859 16 Si 0.887 3.113 17 H -0.279 1.279 18 H -0.286 1.286 19 H -0.274 1.274 20 C 0.063 3.937 21 C -0.106 4.106 22 H 0.051 0.949 23 H 0.049 0.951 24 H 0.052 0.948 25 H 0.092 0.908 26 H 0.048 0.952 27 H 0.047 0.953 28 H 0.054 0.946 29 H 0.053 0.947 30 H 0.077 0.923 31 H 0.056 0.944 32 H 0.056 0.944 33 H 0.077 0.923 34 H 0.059 0.941 35 H 0.024 0.976 36 H 0.340 0.660 37 H 0.260 0.740 38 H 0.060 0.940 39 H 0.028 0.972 40 H 0.073 0.927 41 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.008 3.920 -0.382 15.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.063 4.063 3 C -0.229 4.229 4 C -0.142 4.142 5 C -0.152 4.152 6 C -0.083 4.083 7 N -0.269 5.269 8 C -0.091 4.091 9 C 0.180 3.820 10 H 0.072 0.928 11 O -0.355 6.355 12 C -0.613 4.613 13 H 0.071 0.929 14 C -0.126 4.126 15 N -0.494 5.494 16 Si 0.714 3.286 17 H -0.205 1.205 18 H -0.212 1.212 19 H -0.199 1.199 20 C -0.067 4.067 21 C -0.144 4.144 22 H 0.070 0.930 23 H 0.068 0.932 24 H 0.071 0.929 25 H 0.110 0.890 26 H 0.067 0.933 27 H 0.066 0.934 28 H 0.073 0.927 29 H 0.072 0.928 30 H 0.096 0.904 31 H 0.075 0.925 32 H 0.073 0.927 33 H 0.095 0.905 34 H 0.077 0.923 35 H 0.042 0.958 36 H 0.183 0.817 37 H 0.069 0.931 38 H 0.078 0.922 39 H 0.046 0.954 40 H 0.092 0.908 41 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -14.939 3.286 -1.148 15.339 hybrid contribution 0.920 1.304 0.964 1.865 sum -14.018 4.590 -0.184 14.752 Atomic orbital electron populations 1.21993 0.95283 1.01305 1.01136 1.20322 0.94659 0.95595 0.95682 1.22866 1.03263 0.95663 1.01140 1.22038 0.96801 0.99436 0.95953 1.21357 0.93266 1.00442 1.00112 1.22217 1.00639 0.97357 0.88049 1.58750 1.02169 1.64061 1.01903 1.23018 0.90132 0.97245 0.98676 1.19333 0.88197 0.78872 0.95627 0.92800 1.86562 1.96044 1.27060 1.25810 1.21691 0.92029 1.20635 1.26950 0.92856 1.25012 0.98929 0.94330 0.94296 1.70081 1.26129 1.23399 1.29834 0.86707 0.83563 0.79286 0.78998 1.20548 1.21153 1.19929 1.21156 0.91119 0.97154 0.97232 1.21532 0.96111 1.00896 0.95849 0.93002 0.93182 0.92895 0.88977 0.93277 0.93395 0.92674 0.92838 0.90440 0.92543 0.92681 0.90465 0.92251 0.95783 0.81672 0.93058 0.92199 0.95437 0.90783 0.92210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.42 7.97 37.16 0.30 -1.13 16 2 C -0.06 -0.75 0.72 -155.02 -0.11 -0.86 16 3 C -0.17 -2.11 6.47 37.16 0.24 -1.87 16 4 C -0.10 -1.32 4.89 -25.69 -0.13 -1.45 16 5 C -0.11 -1.75 5.41 -27.40 -0.15 -1.90 16 6 C 0.04 0.75 5.09 -4.51 -0.02 0.72 16 7 N -0.54 -9.84 3.81 -240.00 -0.91 -10.75 16 8 C 0.04 0.75 4.52 -3.83 -0.02 0.73 16 9 C 0.24 6.05 2.78 -27.88 -0.08 5.97 16 10 H 0.05 1.51 6.30 -51.93 -0.33 1.18 16 11 O -0.55 -14.59 12.62 -35.23 -0.44 -15.04 16 12 C -0.57 -15.87 8.76 -34.44 -0.30 -16.17 16 13 H 0.05 1.44 7.74 -52.49 -0.41 1.03 16 14 C 0.08 2.27 5.40 -17.82 -0.10 2.17 16 15 N -0.86 -25.62 12.84 55.43 0.71 -24.91 16 16 Si 0.89 21.27 29.54 -169.99 -5.02 16.25 16 17 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 18 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 19 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 20 C 0.06 0.96 4.83 -6.75 -0.03 0.93 16 21 C -0.11 -1.40 5.03 -27.11 -0.14 -1.53 16 22 H 0.05 0.50 8.02 -51.93 -0.42 0.08 16 23 H 0.05 0.48 8.14 -51.92 -0.42 0.06 16 24 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 25 H 0.09 1.28 2.68 -51.93 -0.14 1.14 16 26 H 0.05 0.57 7.65 -51.93 -0.40 0.17 16 27 H 0.05 0.54 7.94 -51.93 -0.41 0.12 16 28 H 0.05 0.65 7.99 -51.93 -0.41 0.24 16 29 H 0.05 0.63 7.66 -51.93 -0.40 0.24 16 30 H 0.08 1.34 7.26 -51.93 -0.38 0.96 16 31 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.06 0.86 4.00 -51.93 -0.21 0.65 16 33 H 0.08 1.52 5.93 -51.93 -0.31 1.21 16 34 H 0.06 1.21 7.71 -51.93 -0.40 0.81 16 35 H 0.02 0.50 8.11 -51.93 -0.42 0.08 16 36 H 0.34 8.13 9.04 45.56 0.41 8.54 16 37 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 38 H 0.06 0.92 7.73 -51.93 -0.40 0.52 16 39 H 0.03 0.41 4.97 -51.93 -0.26 0.16 16 40 H 0.07 1.07 7.11 -51.93 -0.37 0.70 16 41 H 0.06 0.70 7.68 -51.93 -0.40 0.30 16 LS Contribution 300.26 15.07 4.52 4.52 Total: -1.00 -29.57 300.26 -7.72 -37.29 By element: Atomic # 1 Polarization: 13.06 SS G_CDS: -6.04 Total: 7.01 kcal Atomic # 6 Polarization: -13.84 SS G_CDS: -0.53 Total: -14.38 kcal Atomic # 7 Polarization: -35.46 SS G_CDS: -0.20 Total: -35.66 kcal Atomic # 8 Polarization: -14.59 SS G_CDS: -0.44 Total: -15.04 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -29.57 -7.72 -37.29 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000809574030.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.402 kcal (2) G-P(sol) polarization free energy of solvation -29.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.292 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds