Wall clock time and date at job start Thu Apr 9 2020 12:14:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 N 1.41606 * 113.99685 * 2 1 4 4 C 1.34777 * 119.99758 * 269.99704 * 3 2 1 5 5 O 1.21283 * 119.99565 * 184.93194 * 4 3 2 6 6 C 1.50695 * 119.99934 * 4.93288 * 4 3 2 7 7 C 1.53004 * 109.46746 * 179.97438 * 6 4 3 8 8 C 1.50699 * 109.47102 * 179.97438 * 7 6 4 9 9 H 1.08007 * 119.99908 * 359.97438 * 8 7 6 10 10 C 1.37872 * 120.00039 * 180.02562 * 8 7 6 11 11 N 1.31515 * 120.00276 * 359.97438 * 10 8 7 12 12 Si 1.86803 * 119.99992 * 180.02562 * 10 8 7 13 13 H 1.48497 * 109.47183 * 59.99849 * 12 10 8 14 14 H 1.48497 * 109.46993 * 180.02562 * 12 10 8 15 15 H 1.48499 * 109.46942 * 299.99599 * 12 10 8 16 16 C 1.46498 * 119.99775 * 89.99826 * 3 2 1 17 17 C 1.54261 * 110.03493 * 297.55044 * 16 3 2 18 18 C 1.54962 * 104.16254 * 95.75610 * 17 16 3 19 19 C 1.54886 * 102.77659 * 37.88990 * 18 17 16 20 20 C 1.53874 * 110.03315 * 54.76941 * 16 3 2 21 21 H 1.09001 * 109.47346 * 299.99589 * 1 2 3 22 22 H 1.09003 * 109.47386 * 60.00407 * 1 2 3 23 23 H 1.09011 * 109.46780 * 180.02562 * 1 2 3 24 24 H 1.08998 * 109.47243 * 299.99661 * 6 4 3 25 25 H 1.08996 * 109.47336 * 60.00050 * 6 4 3 26 26 H 1.08998 * 109.47221 * 299.99979 * 7 6 4 27 27 H 1.08996 * 109.46914 * 60.00095 * 7 6 4 28 28 H 0.96997 * 120.00331 * 179.97438 * 11 10 8 29 29 H 1.09003 * 110.01667 * 176.15613 * 16 3 2 30 30 H 1.09007 * 110.48501 * 214.40638 * 17 16 3 31 31 H 1.09004 * 110.48369 * 337.04113 * 17 16 3 32 32 H 1.08997 * 110.71790 * 279.57352 * 18 17 16 33 33 H 1.09005 * 110.92106 * 156.29720 * 18 17 16 34 34 H 1.08997 * 110.48657 * 203.40643 * 19 18 17 35 35 H 1.08996 * 110.60073 * 80.81652 * 19 18 17 36 36 H 1.09003 * 110.03179 * 359.94545 * 20 16 3 37 37 H 1.08999 * 110.04044 * 121.37923 * 20 16 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 7 2.0048 1.2937 0.0000 4 6 2.2789 1.9092 -1.1672 5 8 2.8533 2.9774 -1.1691 6 6 1.8717 1.2703 -2.4698 7 6 2.2972 2.1683 -3.6333 8 6 1.8906 1.5291 -4.9360 9 1 1.3801 0.5772 -4.9343 10 6 2.1711 2.1588 -6.1300 11 7 2.7931 3.3175 -6.1321 12 14 1.6664 1.3667 -7.7448 13 1 0.1922 1.1901 -7.7700 14 1 2.0805 2.2377 -8.8740 15 1 2.3259 0.0425 -7.8740 16 6 2.3027 1.9628 1.2687 17 6 1.0002 2.1964 2.0615 18 6 0.9239 0.9889 3.0298 19 6 2.4040 0.7820 3.4365 20 6 3.1949 1.0635 2.1422 21 1 -0.3634 0.5138 0.8900 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3633 -1.0278 0.0005 24 1 2.3558 0.2983 -2.5648 25 1 0.7897 1.1406 -2.4883 26 1 1.8128 3.1401 -3.5382 27 1 3.3792 2.2983 -3.6150 28 1 2.9908 3.7604 -6.9722 29 1 2.8012 2.9138 1.0810 30 1 1.0562 3.1306 2.6206 31 1 0.1412 2.2033 1.3905 32 1 0.5371 0.1079 2.5177 33 1 0.3134 1.2266 3.9010 34 1 2.5686 -0.2430 3.7688 35 1 2.6889 1.4859 4.2184 36 1 3.4055 0.1288 1.6225 37 1 4.1264 1.5780 2.3784 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000812546931.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:14:49 Heat of formation + Delta-G solvation = -47.005017 kcal Electronic energy + Delta-G solvation = -17946.521153 eV Core-core repulsion = 15111.542942 eV Total energy + Delta-G solvation = -2834.978211 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.87371 -37.77772 -36.53334 -33.46007 -32.16876 -30.97822 -28.98036 -27.84814 -26.49528 -25.24089 -22.02078 -20.79455 -20.11727 -19.71826 -17.26567 -16.76686 -15.92107 -15.77952 -15.21916 -14.78209 -14.41817 -14.39876 -14.14102 -13.71428 -13.29642 -12.60749 -12.23088 -12.11562 -11.66693 -11.55879 -11.25340 -11.23016 -11.11810 -10.91253 -10.85782 -10.68571 -10.59669 -10.36561 -9.90519 -9.64808 -9.17482 -9.00518 -8.70855 -8.30125 -5.94480 -3.98756 2.14744 3.06038 3.35843 3.40343 3.42249 4.25342 4.48103 4.49230 4.57133 4.81750 5.19396 5.28283 5.30379 5.38887 5.40357 5.40458 5.51013 5.55155 5.61430 5.68075 5.72368 5.77170 5.90916 6.08931 6.12831 6.23405 6.25633 6.34366 6.77494 6.91428 7.74473 7.77626 7.86734 8.07819 8.38493 8.59863 9.08886 9.64605 11.16528 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.047801 B = 0.005033 C = 0.004767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 585.615585 B = 5561.653922 C = 5872.920787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.017 4.017 2 O -0.136 6.136 3 N -0.482 5.482 4 C 0.522 3.478 5 O -0.519 6.519 6 C -0.124 4.124 7 C 0.036 3.964 8 C -0.526 4.526 9 H 0.055 0.945 10 C 0.059 3.941 11 N -0.890 5.890 12 Si 0.893 3.107 13 H -0.277 1.277 14 H -0.287 1.287 15 H -0.277 1.277 16 C 0.134 3.866 17 C -0.141 4.141 18 C -0.127 4.127 19 C -0.120 4.120 20 C -0.131 4.131 21 H 0.056 0.944 22 H 0.056 0.944 23 H 0.100 0.900 24 H 0.085 0.915 25 H 0.077 0.923 26 H 0.023 0.977 27 H 0.024 0.976 28 H 0.261 0.739 29 H 0.114 0.886 30 H 0.077 0.923 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.064 0.936 34 H 0.065 0.935 35 H 0.064 0.936 36 H 0.079 0.921 37 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.737 -6.217 18.575 20.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 O -0.141 6.141 3 N -0.263 5.263 4 C 0.314 3.686 5 O -0.393 6.393 6 C -0.164 4.164 7 C -0.002 4.002 8 C -0.565 4.565 9 H 0.073 0.927 10 C -0.143 4.143 11 N -0.529 5.529 12 Si 0.721 3.279 13 H -0.203 1.203 14 H -0.213 1.213 15 H -0.202 1.202 16 C 0.032 3.968 17 C -0.180 4.180 18 C -0.164 4.164 19 C -0.158 4.158 20 C -0.170 4.170 21 H 0.075 0.925 22 H 0.075 0.925 23 H 0.118 0.882 24 H 0.103 0.897 25 H 0.095 0.905 26 H 0.041 0.959 27 H 0.043 0.957 28 H 0.071 0.929 29 H 0.132 0.868 30 H 0.096 0.904 31 H 0.089 0.911 32 H 0.089 0.911 33 H 0.083 0.917 34 H 0.083 0.917 35 H 0.083 0.917 36 H 0.098 0.902 37 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -4.220 -5.647 18.422 19.725 hybrid contribution -0.660 -0.470 -0.878 1.195 sum -4.879 -6.117 17.545 19.211 Atomic orbital electron populations 1.23559 0.82610 1.03559 1.01734 1.90590 1.19433 1.07378 1.96698 1.50490 1.59500 1.10213 1.06069 1.21837 0.77347 0.84367 0.85024 1.90706 1.41221 1.21579 1.85810 1.21861 1.01595 1.01674 0.91232 1.18938 0.97645 0.94121 0.89483 1.21167 1.38281 1.05947 0.91057 0.92653 1.25014 0.95201 0.94914 0.99175 1.69984 1.40847 1.15392 1.26681 0.86649 0.78898 0.79225 0.83144 1.20275 1.21276 1.20222 1.21971 0.95507 0.96541 0.82763 1.22892 0.97696 0.99020 0.98344 1.22598 0.96851 0.98261 0.98695 1.22312 0.94948 1.01346 0.97184 1.22488 0.98223 1.00706 0.95572 0.92521 0.92505 0.88158 0.89673 0.90497 0.95907 0.95739 0.92898 0.86812 0.90420 0.91076 0.91088 0.91689 0.91652 0.91707 0.90248 0.91214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.02 -0.19 10.23 101.05 1.03 0.85 16 2 O -0.14 -1.95 10.16 -11.47 -0.12 -2.07 16 3 N -0.48 -7.78 2.69 -52.73 -0.14 -7.92 16 4 C 0.52 10.64 7.75 -10.99 -0.09 10.56 16 5 O -0.52 -12.29 15.34 5.56 0.09 -12.20 16 6 C -0.12 -2.67 4.85 -27.88 -0.14 -2.80 16 7 C 0.04 0.98 4.26 -27.88 -0.12 0.86 16 8 C -0.53 -15.13 9.11 -34.44 -0.31 -15.45 16 9 H 0.06 1.51 7.74 -52.48 -0.41 1.10 16 10 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 11 N -0.89 -27.61 13.29 55.43 0.74 -26.87 16 12 Si 0.89 21.83 29.54 -169.99 -5.02 16.81 16 13 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 14 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 15 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 16 C 0.13 1.82 3.40 -66.82 -0.23 1.59 16 17 C -0.14 -1.53 5.82 -25.04 -0.15 -1.68 16 18 C -0.13 -1.15 6.59 -24.70 -0.16 -1.31 16 19 C -0.12 -1.09 6.83 -25.07 -0.17 -1.26 16 20 C -0.13 -1.51 6.43 -25.61 -0.16 -1.68 16 21 H 0.06 0.56 4.35 -51.93 -0.23 0.33 16 22 H 0.06 0.69 6.89 -51.93 -0.36 0.33 16 23 H 0.10 0.86 8.14 -51.92 -0.42 0.44 16 24 H 0.08 1.76 8.14 -51.93 -0.42 1.34 16 25 H 0.08 1.52 6.90 -51.93 -0.36 1.16 16 26 H 0.02 0.67 8.10 -51.93 -0.42 0.25 16 27 H 0.02 0.73 8.10 -51.93 -0.42 0.31 16 28 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 29 H 0.11 1.72 6.95 -51.93 -0.36 1.36 16 30 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.07 0.81 6.30 -51.93 -0.33 0.49 16 32 H 0.07 0.66 6.16 -51.93 -0.32 0.34 16 33 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 34 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.08 1.01 7.58 -51.93 -0.39 0.62 16 37 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 LS Contribution 297.43 15.07 4.48 4.48 Total: -1.00 -32.87 297.43 -6.25 -39.12 By element: Atomic # 1 Polarization: 3.02 SS G_CDS: -5.68 Total: -2.66 kcal Atomic # 6 Polarization: -8.11 SS G_CDS: -0.59 Total: -8.69 kcal Atomic # 7 Polarization: -35.38 SS G_CDS: 0.59 Total: -34.79 kcal Atomic # 8 Polarization: -14.24 SS G_CDS: -0.03 Total: -14.27 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -32.87 -6.25 -39.12 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812546931.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.884 kcal (2) G-P(sol) polarization free energy of solvation -32.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.121 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds