Wall clock time and date at job start Thu Apr 9 2020 12:14:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42898 * 113.99913 * 2 1 4 4 C 1.52999 * 109.47371 * 180.02562 * 3 2 1 5 5 N 1.46505 * 109.46626 * 64.99957 * 4 3 2 6 6 C 1.36936 * 120.00179 * 270.00064 * 5 4 3 7 7 H 1.07995 * 119.99580 * 141.24642 * 6 5 4 8 8 C 1.38816 * 120.00119 * 321.24344 * 6 5 4 9 9 N 1.31620 * 120.00005 * 339.48440 * 8 6 5 10 10 Si 1.86797 * 119.99988 * 159.48978 * 8 6 5 11 11 H 1.48496 * 109.47423 * 59.99413 * 10 8 6 12 12 H 1.48496 * 109.47045 * 180.02562 * 10 8 6 13 13 H 1.48504 * 109.46570 * 299.99883 * 10 8 6 14 14 C 1.46504 * 119.99850 * 90.00975 * 5 4 3 15 15 C 1.52997 * 109.47608 * 95.35551 * 14 5 4 16 16 H 1.09002 * 109.70002 * 59.41717 * 15 14 5 17 17 C 1.53503 * 109.70874 * 180.02562 * 15 14 5 18 18 C 1.53252 * 108.15816 * 182.08894 * 17 15 14 19 19 C 1.50445 * 109.43971 * 313.17455 * 18 17 15 20 20 C 1.30689 * 122.49464 * 17.46123 * 19 18 17 21 21 O 1.35124 * 123.34535 * 359.61263 * 20 19 18 22 22 H 1.09000 * 109.47147 * 299.99981 * 1 2 3 23 23 H 1.08998 * 109.47043 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.47558 * 59.99496 * 1 2 3 25 25 H 1.09003 * 109.47514 * 300.00153 * 3 2 1 26 26 H 1.09006 * 109.47179 * 60.00159 * 3 2 1 27 27 H 1.08997 * 109.47562 * 185.00239 * 4 3 2 28 28 H 1.09007 * 109.46984 * 305.01041 * 4 3 2 29 29 H 0.96991 * 120.00008 * 180.02562 * 9 8 6 30 30 H 1.08996 * 109.46982 * 215.36443 * 14 5 4 31 31 H 1.09005 * 109.46585 * 335.35170 * 14 5 4 32 32 H 1.09001 * 109.71927 * 301.75343 * 17 15 14 33 33 H 1.09002 * 109.72409 * 62.37652 * 17 15 14 34 34 H 1.09000 * 109.47540 * 73.16575 * 18 17 15 35 35 H 1.08994 * 109.47550 * 193.18295 * 18 17 15 36 36 H 1.08000 * 118.75031 * 197.47509 * 19 18 17 37 37 H 1.07997 * 118.32409 * 179.56634 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9755 0.5645 -1.2528 6 6 4.0966 -0.7969 -1.3370 7 1 3.8033 -1.3102 -2.2408 8 6 4.5965 -1.5172 -0.2608 9 7 5.3166 -0.9111 0.6592 10 14 4.2471 -3.3467 -0.1182 11 1 4.7954 -4.0494 -1.3059 12 1 4.8873 -3.8785 1.1116 13 1 2.7801 -3.5663 -0.0467 14 6 4.2863 1.4008 -2.4149 15 6 5.7907 1.6763 -2.4574 16 1 6.3350 0.7343 -2.5236 17 6 6.1222 2.5530 -3.6730 18 6 7.6398 2.7629 -3.7108 19 6 8.1276 3.1396 -2.3384 20 6 7.4173 2.9361 -1.2604 21 8 6.1858 2.3801 -1.2764 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3634 0.5139 -0.8899 25 1 1.6886 1.8464 -0.8900 26 1 1.6886 1.8464 0.8900 27 1 3.9785 2.1765 0.0890 28 1 3.8514 0.5681 0.8409 29 1 5.6662 -1.4144 1.4110 30 1 3.9858 0.8832 -3.3258 31 1 3.7461 2.3444 -2.3382 32 1 5.7969 2.0542 -4.5859 33 1 5.6192 3.5156 -3.5805 34 1 8.1264 1.8409 -4.0290 35 1 7.8789 3.5612 -4.4133 36 1 9.1016 3.5958 -2.2403 37 1 7.8362 3.2263 -0.3083 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000835069274.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:14:51 Heat of formation + Delta-G solvation = -47.794621 kcal Electronic energy + Delta-G solvation = -18369.373770 eV Core-core repulsion = 15534.361319 eV Total energy + Delta-G solvation = -2835.012450 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.34204 -37.08483 -35.17994 -33.30963 -31.91846 -30.66201 -28.65659 -26.35548 -25.57694 -23.89617 -22.82209 -21.92088 -19.98643 -18.21318 -16.62273 -16.22442 -15.66513 -15.13368 -14.98870 -14.68180 -14.08270 -13.86271 -13.69443 -13.27607 -13.06743 -12.41361 -12.27762 -12.24205 -11.67393 -11.48103 -10.94363 -10.74230 -10.63467 -10.58127 -10.46954 -10.27577 -10.00406 -9.83323 -9.60983 -9.54293 -8.75141 -8.29703 -7.76125 -6.40815 -5.60191 -3.18703 2.85968 3.49326 3.54325 3.60340 4.25199 4.64450 4.77896 5.21631 5.25633 5.41996 5.52315 5.65219 5.78928 5.84467 5.86184 5.97595 6.03222 6.12307 6.14750 6.21397 6.23196 6.33406 6.39312 6.40575 6.54992 6.73140 6.87868 6.94635 6.96055 7.11161 7.80687 7.96910 8.15993 8.41003 8.69994 9.34003 9.97190 10.54857 11.40279 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.021883 B = 0.008521 C = 0.007060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1279.213993 B = 3285.345425 C = 3965.171447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.355 6.355 3 C 0.046 3.954 4 C 0.149 3.851 5 N -0.568 5.568 6 C -0.248 4.248 7 H 0.054 0.946 8 C 0.023 3.977 9 N -0.884 5.884 10 Si 0.894 3.106 11 H -0.286 1.286 12 H -0.294 1.294 13 H -0.281 1.281 14 C 0.154 3.846 15 C 0.075 3.925 16 H 0.072 0.928 17 C -0.157 4.157 18 C -0.072 4.072 19 C -0.318 4.318 20 C 0.078 3.922 21 O -0.295 6.295 22 H 0.025 0.975 23 H 0.073 0.927 24 H 0.028 0.972 25 H 0.025 0.975 26 H 0.024 0.976 27 H 0.047 0.953 28 H 0.099 0.901 29 H 0.251 0.749 30 H 0.058 0.942 31 H 0.042 0.958 32 H 0.071 0.929 33 H 0.065 0.935 34 H 0.061 0.939 35 H 0.061 0.939 36 H 0.108 0.892 37 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.278 7.360 -4.405 8.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.272 6.272 3 C -0.034 4.034 4 C 0.023 3.977 5 N -0.287 5.287 6 C -0.378 4.378 7 H 0.072 0.928 8 C -0.178 4.178 9 N -0.526 5.526 10 Si 0.724 3.276 11 H -0.212 1.212 12 H -0.220 1.220 13 H -0.208 1.208 14 C 0.027 3.973 15 C 0.016 3.984 16 H 0.090 0.910 17 C -0.195 4.195 18 C -0.109 4.109 19 C -0.338 4.338 20 C 0.014 3.986 21 O -0.207 6.207 22 H 0.044 0.956 23 H 0.092 0.908 24 H 0.046 0.954 25 H 0.044 0.956 26 H 0.042 0.958 27 H 0.065 0.935 28 H 0.117 0.883 29 H 0.061 0.939 30 H 0.077 0.923 31 H 0.060 0.940 32 H 0.090 0.910 33 H 0.084 0.916 34 H 0.079 0.921 35 H 0.080 0.920 36 H 0.126 0.874 37 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -1.250 7.105 -4.095 8.295 hybrid contribution -0.062 -0.678 -0.039 0.682 sum -1.312 6.427 -4.134 7.754 Atomic orbital electron populations 1.22624 0.84462 1.01368 0.98315 1.88232 1.16382 1.27820 1.94793 1.23481 0.99229 0.83975 0.96672 1.20965 0.86797 0.97128 0.92846 1.43586 1.74711 1.02409 1.07986 1.18773 1.36150 0.81571 1.01280 0.92836 1.25080 0.96159 0.97382 0.99166 1.70002 1.33644 1.35434 1.13510 0.86531 0.78346 0.86032 0.76694 1.21197 1.21992 1.20751 1.21045 0.89138 0.94324 0.92820 1.23544 1.00575 0.92911 0.81381 0.91005 1.22306 0.96318 1.00961 0.99931 1.20211 0.95298 1.00469 0.94961 1.22268 1.02671 1.14261 0.94604 1.22024 0.85737 0.92937 0.97936 1.86056 1.28613 1.65633 1.40382 0.95615 0.90828 0.95386 0.95629 0.95829 0.93496 0.88339 0.93880 0.92345 0.93986 0.90986 0.91614 0.92071 0.92006 0.87436 0.83921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.51 11.01 101.05 1.11 1.62 16 2 O -0.35 -8.05 10.18 -35.23 -0.36 -8.40 16 3 C 0.05 0.95 6.28 37.16 0.23 1.19 16 4 C 0.15 3.57 5.53 -4.04 -0.02 3.55 16 5 N -0.57 -14.09 2.31 -173.23 -0.40 -14.49 16 6 C -0.25 -6.81 8.95 -15.06 -0.13 -6.95 16 7 H 0.05 1.49 7.91 -52.49 -0.42 1.07 16 8 C 0.02 0.63 4.97 -17.43 -0.09 0.55 16 9 N -0.88 -25.82 11.50 55.49 0.64 -25.19 16 10 Si 0.89 22.47 29.60 -169.99 -5.03 17.44 16 11 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 12 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 13 H -0.28 -7.13 7.11 56.52 0.40 -6.73 16 14 C 0.15 3.22 5.39 -4.04 -0.02 3.20 16 15 C 0.07 1.50 3.09 -26.47 -0.08 1.42 16 16 H 0.07 1.66 8.14 -51.93 -0.42 1.24 16 17 C -0.16 -2.50 5.54 -26.34 -0.15 -2.64 16 18 C -0.07 -1.09 6.23 -27.88 -0.17 -1.26 16 19 C -0.32 -5.11 9.97 -36.06 -0.36 -5.47 16 20 C 0.08 1.41 10.88 29.10 0.32 1.72 16 21 O -0.29 -6.26 9.31 -17.07 -0.16 -6.42 16 22 H 0.03 0.39 8.14 -51.93 -0.42 -0.04 16 23 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 24 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 25 H 0.03 0.51 8.14 -51.93 -0.42 0.08 16 26 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.05 1.08 7.60 -51.93 -0.39 0.68 16 28 H 0.10 2.72 5.57 -51.93 -0.29 2.43 16 29 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 30 H 0.06 1.16 8.08 -51.93 -0.42 0.74 16 31 H 0.04 0.81 8.03 -51.93 -0.42 0.39 16 32 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 33 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 36 H 0.11 1.51 8.06 -52.49 -0.42 1.09 16 37 H 0.14 2.23 8.06 -52.49 -0.42 1.81 16 LS Contribution 305.10 15.07 4.60 4.60 Total: -1.00 -30.52 305.10 -6.22 -36.74 By element: Atomic # 1 Polarization: 4.94 SS G_CDS: -6.14 Total: -1.20 kcal Atomic # 6 Polarization: -3.71 SS G_CDS: 0.64 Total: -3.08 kcal Atomic # 7 Polarization: -39.91 SS G_CDS: 0.24 Total: -39.67 kcal Atomic # 8 Polarization: -14.31 SS G_CDS: -0.52 Total: -14.82 kcal Atomic # 14 Polarization: 22.47 SS G_CDS: -5.03 Total: 17.44 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -30.52 -6.22 -36.74 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835069274.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.053 kcal (2) G-P(sol) polarization free energy of solvation -30.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.741 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds