Wall clock time and date at job start Thu Apr 9 2020 12:14:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42898 * 113.99913 * 2 1 4 4 C 1.52999 * 109.47371 * 180.02562 * 3 2 1 5 5 N 1.46505 * 109.46626 * 64.99957 * 4 3 2 6 6 C 1.36936 * 120.00179 * 270.00064 * 5 4 3 7 7 H 1.07995 * 119.99580 * 141.24642 * 6 5 4 8 8 C 1.38816 * 120.00119 * 321.24344 * 6 5 4 9 9 N 1.31620 * 120.00005 * 339.48440 * 8 6 5 10 10 Si 1.86797 * 119.99988 * 159.48978 * 8 6 5 11 11 H 1.48496 * 109.47423 * 59.99413 * 10 8 6 12 12 H 1.48496 * 109.47045 * 180.02562 * 10 8 6 13 13 H 1.48504 * 109.46570 * 299.99883 * 10 8 6 14 14 C 1.46504 * 119.99850 * 90.00975 * 5 4 3 15 15 C 1.52997 * 109.47608 * 95.35551 * 14 5 4 16 16 H 1.09002 * 109.70002 * 59.41717 * 15 14 5 17 17 C 1.53503 * 109.70874 * 180.02562 * 15 14 5 18 18 C 1.53252 * 108.15816 * 182.08894 * 17 15 14 19 19 C 1.50445 * 109.43971 * 313.17455 * 18 17 15 20 20 C 1.30689 * 122.49464 * 17.46123 * 19 18 17 21 21 O 1.35124 * 123.34535 * 359.61263 * 20 19 18 22 22 H 1.09000 * 109.47147 * 299.99981 * 1 2 3 23 23 H 1.08998 * 109.47043 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.47558 * 59.99496 * 1 2 3 25 25 H 1.09003 * 109.47514 * 300.00153 * 3 2 1 26 26 H 1.09006 * 109.47179 * 60.00159 * 3 2 1 27 27 H 1.08997 * 109.47562 * 185.00239 * 4 3 2 28 28 H 1.09007 * 109.46984 * 305.01041 * 4 3 2 29 29 H 0.96991 * 120.00008 * 180.02562 * 9 8 6 30 30 H 1.08996 * 109.46982 * 215.36443 * 14 5 4 31 31 H 1.09005 * 109.46585 * 335.35170 * 14 5 4 32 32 H 1.09001 * 109.71927 * 301.75343 * 17 15 14 33 33 H 1.09002 * 109.72409 * 62.37652 * 17 15 14 34 34 H 1.09000 * 109.47540 * 73.16575 * 18 17 15 35 35 H 1.08994 * 109.47550 * 193.18295 * 18 17 15 36 36 H 1.08000 * 118.75031 * 197.47509 * 19 18 17 37 37 H 1.07997 * 118.32409 * 179.56634 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9755 0.5645 -1.2528 6 6 4.0966 -0.7969 -1.3370 7 1 3.8033 -1.3102 -2.2408 8 6 4.5965 -1.5172 -0.2608 9 7 5.3166 -0.9111 0.6592 10 14 4.2471 -3.3467 -0.1182 11 1 4.7954 -4.0494 -1.3059 12 1 4.8873 -3.8785 1.1116 13 1 2.7801 -3.5663 -0.0467 14 6 4.2863 1.4008 -2.4149 15 6 5.7907 1.6763 -2.4574 16 1 6.3350 0.7343 -2.5236 17 6 6.1222 2.5530 -3.6730 18 6 7.6398 2.7629 -3.7108 19 6 8.1276 3.1396 -2.3384 20 6 7.4173 2.9361 -1.2604 21 8 6.1858 2.3801 -1.2764 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3634 0.5139 -0.8899 25 1 1.6886 1.8464 -0.8900 26 1 1.6886 1.8464 0.8900 27 1 3.9785 2.1765 0.0890 28 1 3.8514 0.5681 0.8409 29 1 5.6662 -1.4144 1.4110 30 1 3.9858 0.8832 -3.3258 31 1 3.7461 2.3444 -2.3382 32 1 5.7969 2.0542 -4.5859 33 1 5.6192 3.5156 -3.5805 34 1 8.1264 1.8409 -4.0290 35 1 7.8789 3.5612 -4.4133 36 1 9.1016 3.5958 -2.2403 37 1 7.8362 3.2263 -0.3083 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000835069274.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:14:51 Heat of formation + Delta-G solvation = -66.709886 kcal Electronic energy + Delta-G solvation = -18370.193997 eV Core-core repulsion = 15534.361319 eV Total energy + Delta-G solvation = -2835.832678 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.79398 -38.74581 -36.98001 -34.66272 -33.72877 -32.40579 -30.31271 -28.02004 -27.09420 -25.57911 -24.32236 -23.51630 -21.82804 -19.64081 -18.56883 -17.62582 -17.31229 -16.71295 -16.58070 -16.41429 -15.79301 -15.44628 -15.13320 -15.09311 -14.60312 -13.89589 -13.72829 -13.63852 -13.39034 -13.09611 -12.68237 -12.54094 -12.47757 -12.28760 -12.07874 -11.87737 -11.65691 -11.50563 -11.43980 -11.06038 -10.40200 -10.31459 -9.13668 -8.41898 -7.68682 -5.30125 1.46447 1.51337 1.52758 1.57491 2.58948 2.84076 3.24588 3.42259 3.65093 3.98289 4.08592 4.20953 4.41062 4.47163 4.54517 4.55505 4.64663 4.67605 4.77457 4.82592 4.85232 4.85713 4.91645 5.00058 5.04892 5.11027 5.12613 5.38455 5.53256 5.75359 5.79818 5.89357 6.52015 6.70055 6.98910 7.29969 7.97760 8.50926 9.27266 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.021883 B = 0.008521 C = 0.007060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1279.213993 B = 3285.345425 C = 3965.171447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.398 6.398 3 C 0.055 3.945 4 C 0.152 3.848 5 N -0.582 5.582 6 C -0.244 4.244 7 H 0.047 0.953 8 C -0.025 4.025 9 N -0.912 5.912 10 Si 0.945 3.055 11 H -0.277 1.277 12 H -0.297 1.297 13 H -0.284 1.284 14 C 0.152 3.848 15 C 0.079 3.921 16 H 0.030 0.970 17 C -0.146 4.146 18 C -0.078 4.078 19 C -0.298 4.298 20 C 0.040 3.960 21 O -0.326 6.326 22 H 0.046 0.954 23 H 0.081 0.919 24 H 0.044 0.956 25 H 0.040 0.960 26 H 0.046 0.954 27 H 0.049 0.951 28 H 0.060 0.940 29 H 0.244 0.756 30 H 0.066 0.934 31 H 0.060 0.940 32 H 0.090 0.910 33 H 0.076 0.924 34 H 0.061 0.939 35 H 0.093 0.907 36 H 0.132 0.868 37 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.682 8.458 -5.822 10.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.317 6.317 3 C -0.024 4.024 4 C 0.025 3.975 5 N -0.302 5.302 6 C -0.375 4.375 7 H 0.065 0.935 8 C -0.222 4.222 9 N -0.556 5.556 10 Si 0.774 3.226 11 H -0.203 1.203 12 H -0.224 1.224 13 H -0.211 1.211 14 C 0.026 3.974 15 C 0.020 3.980 16 H 0.048 0.952 17 C -0.185 4.185 18 C -0.115 4.115 19 C -0.318 4.318 20 C -0.024 4.024 21 O -0.239 6.239 22 H 0.064 0.936 23 H 0.099 0.901 24 H 0.062 0.938 25 H 0.058 0.942 26 H 0.064 0.936 27 H 0.067 0.933 28 H 0.078 0.922 29 H 0.054 0.946 30 H 0.085 0.915 31 H 0.078 0.922 32 H 0.109 0.891 33 H 0.094 0.906 34 H 0.079 0.921 35 H 0.111 0.889 36 H 0.150 0.850 37 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -1.659 8.219 -5.536 10.047 hybrid contribution 0.065 -0.952 0.347 1.015 sum -1.594 7.267 -5.189 9.071 Atomic orbital electron populations 1.22819 0.81635 1.02551 1.00075 1.88147 1.19592 1.28769 1.95178 1.23262 0.96871 0.83925 0.98340 1.20805 0.89169 0.96129 0.91366 1.43727 1.75326 1.02048 1.09057 1.18906 1.34645 0.83174 1.00775 0.93534 1.25639 0.96720 1.00453 0.99423 1.70142 1.35178 1.36307 1.13971 0.85714 0.77701 0.82591 0.76574 1.20334 1.22376 1.21060 1.21162 0.90123 0.94550 0.91594 1.23262 0.99115 0.92236 0.83373 0.95201 1.22233 0.97261 1.00569 0.98397 1.20345 0.94508 1.01603 0.95034 1.22660 1.02961 1.11645 0.94539 1.22388 0.85622 0.94807 0.99538 1.86004 1.30415 1.66369 1.41152 0.93552 0.90062 0.93769 0.94190 0.93620 0.93303 0.92214 0.94637 0.91549 0.92177 0.89132 0.90551 0.92055 0.88870 0.84970 0.82669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.83 11.01 113.37 1.25 2.08 16 2 O -0.40 -17.73 10.18 -148.98 -1.52 -19.25 16 3 C 0.05 2.23 6.28 71.98 0.45 2.68 16 4 C 0.15 7.35 5.53 86.38 0.48 7.83 16 5 N -0.58 -29.10 2.31 -701.98 -1.62 -30.72 16 6 C -0.24 -13.62 8.95 84.03 0.75 -12.87 16 7 H 0.05 2.62 7.91 -2.91 -0.02 2.59 16 8 C -0.03 -1.44 4.97 84.86 0.42 -1.02 16 9 N -0.91 -55.04 11.50 21.65 0.25 -54.79 16 10 Si 0.94 47.00 29.60 68.60 2.03 49.03 16 11 H -0.28 -13.28 7.11 99.48 0.71 -12.57 16 12 H -0.30 -14.82 7.11 99.48 0.71 -14.12 16 13 H -0.28 -14.12 7.11 99.48 0.71 -13.41 16 14 C 0.15 6.26 5.39 86.38 0.47 6.73 16 15 C 0.08 3.16 3.09 30.76 0.10 3.25 16 16 H 0.03 1.42 8.14 -2.39 -0.02 1.40 16 17 C -0.15 -4.33 5.54 30.85 0.17 -4.16 16 18 C -0.08 -2.13 6.23 29.85 0.19 -1.94 16 19 C -0.30 -8.93 9.97 25.88 0.26 -8.68 16 20 C 0.04 1.41 10.88 68.10 0.74 2.15 16 21 O -0.33 -13.95 9.31 -84.01 -0.78 -14.74 16 22 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 23 H 0.08 2.44 8.14 -2.39 -0.02 2.42 16 24 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 25 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 26 H 0.05 1.64 8.14 -2.38 -0.02 1.62 16 27 H 0.05 2.28 7.60 -2.39 -0.02 2.26 16 28 H 0.06 3.41 5.57 -2.38 -0.01 3.39 16 29 H 0.24 14.48 8.31 -92.72 -0.77 13.71 16 30 H 0.07 2.58 8.08 -2.39 -0.02 2.57 16 31 H 0.06 2.23 8.03 -2.38 -0.02 2.21 16 32 H 0.09 2.33 8.14 -2.39 -0.02 2.31 16 33 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 34 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 35 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 36 H 0.13 3.27 8.06 -2.91 -0.02 3.25 16 37 H 0.16 4.84 8.06 -2.91 -0.02 4.81 16 Total: -1.00 -66.82 305.10 4.65 -62.18 By element: Atomic # 1 Polarization: 11.22 SS G_CDS: 1.02 Total: 12.24 kcal Atomic # 6 Polarization: -9.22 SS G_CDS: 5.27 Total: -3.95 kcal Atomic # 7 Polarization: -84.14 SS G_CDS: -1.37 Total: -85.51 kcal Atomic # 8 Polarization: -31.68 SS G_CDS: -2.30 Total: -33.98 kcal Atomic # 14 Polarization: 47.00 SS G_CDS: 2.03 Total: 49.03 kcal Total: -66.82 4.65 -62.18 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835069274.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.534 kcal (2) G-P(sol) polarization free energy of solvation -66.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.175 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds