Wall clock time and date at job start Thu Apr 9 2020 12:14:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42899 * 113.99878 * 2 1 4 4 C 1.52999 * 109.46901 * 180.02562 * 3 2 1 5 5 N 1.46499 * 109.47241 * 64.99654 * 4 3 2 6 6 C 1.36937 * 120.00213 * 269.99886 * 5 4 3 7 7 H 1.08000 * 120.00310 * 142.35896 * 6 5 4 8 8 C 1.38813 * 119.99945 * 322.36056 * 6 5 4 9 9 N 1.31617 * 119.99991 * 338.70794 * 8 6 5 10 10 Si 1.86800 * 120.00163 * 158.70423 * 8 6 5 11 11 H 1.48508 * 109.46828 * 59.99816 * 10 8 6 12 12 H 1.48495 * 109.47517 * 180.02562 * 10 8 6 13 13 H 1.48499 * 109.47242 * 300.00616 * 10 8 6 14 14 C 1.46499 * 119.99997 * 90.00580 * 5 4 3 15 15 C 1.52996 * 109.47623 * 89.10328 * 14 5 4 16 16 H 1.08999 * 109.70612 * 305.58810 * 15 14 5 17 17 C 1.53499 * 109.71171 * 185.00067 * 15 14 5 18 18 C 1.53246 * 108.16262 * 177.91444 * 17 15 14 19 19 C 1.50446 * 109.44284 * 46.82191 * 18 17 15 20 20 C 1.30684 * 122.49154 * 342.54405 * 19 18 17 21 21 O 1.35137 * 123.34616 * 0.38707 * 20 19 18 22 22 H 1.09001 * 109.46755 * 299.99874 * 1 2 3 23 23 H 1.09003 * 109.47203 * 180.02562 * 1 2 3 24 24 H 1.08995 * 109.47017 * 59.99569 * 1 2 3 25 25 H 1.09001 * 109.46972 * 299.99605 * 3 2 1 26 26 H 1.08996 * 109.47212 * 60.00245 * 3 2 1 27 27 H 1.09006 * 109.47080 * 184.99886 * 4 3 2 28 28 H 1.09001 * 109.47157 * 304.99637 * 4 3 2 29 29 H 0.97002 * 119.99887 * 179.97438 * 9 8 6 30 30 H 1.08997 * 109.46968 * 209.10725 * 14 5 4 31 31 H 1.09006 * 109.46564 * 329.10544 * 14 5 4 32 32 H 1.08998 * 109.72769 * 297.58218 * 17 15 14 33 33 H 1.08996 * 109.72516 * 58.24672 * 17 15 14 34 34 H 1.08994 * 109.48039 * 166.81417 * 18 17 15 35 35 H 1.09001 * 109.47391 * 286.83585 * 18 17 15 36 36 H 1.07997 * 118.75787 * 162.51913 * 19 18 17 37 37 H 1.08001 * 118.32974 * 180.43002 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1846 -0.0006 5 7 3.9756 0.5643 -1.2527 6 6 4.0968 -0.7971 -1.3368 7 1 3.8204 -1.3087 -2.2469 8 6 4.5747 -1.5197 -0.2522 9 7 5.2904 -0.9191 0.6748 10 14 4.2019 -3.3445 -0.1082 11 1 4.7566 -4.0575 -1.2870 12 1 4.8205 -3.8799 1.1310 13 1 2.7317 -3.5466 -0.0543 14 6 4.2865 1.4005 -2.4148 15 6 5.7613 1.8051 -2.3722 16 1 5.9851 2.2787 -1.4163 17 6 6.0635 2.7819 -3.5171 18 6 7.5329 3.2036 -3.4100 19 6 8.3892 1.9853 -3.1960 20 6 7.8973 0.8433 -2.7941 21 8 6.5842 0.6475 -2.5422 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3633 0.5139 -0.8899 25 1 1.6886 1.8463 -0.8900 26 1 1.6886 1.8463 0.8900 27 1 3.9785 2.1765 0.0889 28 1 3.8514 0.5682 0.8410 29 1 5.6241 -1.4240 1.4329 30 1 4.0897 0.8401 -3.3287 31 1 3.6637 2.2949 -2.3957 32 1 5.8906 2.2910 -4.4748 33 1 5.4219 3.6588 -3.4315 34 1 7.8355 3.7035 -4.3300 35 1 7.6547 3.8858 -2.5686 36 1 9.4507 2.0572 -3.3819 37 1 8.5749 0.0137 -2.6556 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000835069279.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:14:53 Heat of formation + Delta-G solvation = -45.122078 kcal Electronic energy + Delta-G solvation = -18364.810673 eV Core-core repulsion = 15529.914113 eV Total energy + Delta-G solvation = -2834.896560 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.29554 -37.13153 -35.20805 -33.26517 -31.89728 -30.62955 -28.66008 -26.38489 -25.60814 -23.79300 -22.86980 -21.97504 -19.98656 -18.18810 -16.56890 -16.16971 -15.70545 -15.24690 -14.99262 -14.63512 -14.02959 -13.92097 -13.67804 -13.23543 -13.01771 -12.54887 -12.28774 -12.03182 -11.73643 -11.40833 -11.07243 -10.72526 -10.64449 -10.62339 -10.47875 -10.11689 -10.02609 -9.87796 -9.64280 -9.52999 -8.78626 -8.24572 -7.69986 -6.41207 -5.56561 -3.10034 2.91440 3.55070 3.58323 3.64509 4.30899 4.67839 4.74251 5.21527 5.25995 5.41353 5.56184 5.66789 5.77314 5.83099 5.86242 5.93978 6.03495 6.09042 6.11234 6.17095 6.22681 6.29892 6.34710 6.36462 6.49102 6.66370 6.73138 6.85239 6.96653 7.14066 7.71944 8.03609 8.13096 8.49526 8.73362 9.37093 10.00792 10.55164 11.47135 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.022010 B = 0.008906 C = 0.006890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1271.842245 B = 3143.168383 C = 4062.627596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.353 6.353 3 C 0.047 3.953 4 C 0.142 3.858 5 N -0.570 5.570 6 C -0.226 4.226 7 H 0.055 0.945 8 C 0.021 3.979 9 N -0.892 5.892 10 Si 0.894 3.106 11 H -0.286 1.286 12 H -0.295 1.295 13 H -0.283 1.283 14 C 0.151 3.849 15 C 0.075 3.925 16 H 0.060 0.940 17 C -0.158 4.158 18 C -0.070 4.070 19 C -0.326 4.326 20 C 0.081 3.919 21 O -0.276 6.276 22 H 0.025 0.975 23 H 0.074 0.926 24 H 0.028 0.972 25 H 0.026 0.974 26 H 0.024 0.976 27 H 0.037 0.963 28 H 0.104 0.896 29 H 0.250 0.750 30 H 0.053 0.947 31 H 0.051 0.949 32 H 0.068 0.932 33 H 0.069 0.931 34 H 0.061 0.939 35 H 0.058 0.942 36 H 0.107 0.893 37 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.477 7.456 -4.426 8.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.271 6.271 3 C -0.032 4.032 4 C 0.015 3.985 5 N -0.289 5.289 6 C -0.356 4.356 7 H 0.073 0.927 8 C -0.178 4.178 9 N -0.535 5.535 10 Si 0.724 3.276 11 H -0.212 1.212 12 H -0.221 1.221 13 H -0.209 1.209 14 C 0.024 3.976 15 C 0.016 3.984 16 H 0.078 0.922 17 C -0.196 4.196 18 C -0.108 4.108 19 C -0.346 4.346 20 C 0.016 3.984 21 O -0.187 6.187 22 H 0.044 0.956 23 H 0.092 0.908 24 H 0.047 0.953 25 H 0.044 0.956 26 H 0.042 0.958 27 H 0.055 0.945 28 H 0.122 0.878 29 H 0.059 0.941 30 H 0.071 0.929 31 H 0.069 0.931 32 H 0.087 0.913 33 H 0.088 0.912 34 H 0.080 0.920 35 H 0.077 0.923 36 H 0.125 0.875 37 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -1.416 7.016 -4.247 8.322 hybrid contribution -0.097 -0.350 0.164 0.399 sum -1.512 6.665 -4.083 7.961 Atomic orbital electron populations 1.22630 0.84355 1.01454 0.98317 1.88240 1.16452 1.27606 1.94787 1.23418 0.98926 0.84143 0.96714 1.21017 0.87431 0.96554 0.93485 1.43681 1.74542 1.02895 1.07754 1.18697 1.35744 0.81096 1.00039 0.92741 1.24960 0.96391 0.97198 0.99231 1.69964 1.34852 1.35576 1.13151 0.86521 0.78266 0.86194 0.76589 1.21205 1.22128 1.20942 1.21099 0.88916 0.94479 0.93154 1.23554 0.94355 0.84666 0.95852 0.92210 1.22321 0.96674 1.00220 1.00412 1.20189 0.93914 0.96007 1.00648 1.22229 1.00128 0.96527 1.15750 1.22132 0.85930 0.97442 0.92886 1.86278 1.15525 1.33330 1.83598 0.95607 0.90760 0.95339 0.95578 0.95779 0.94464 0.87823 0.94061 0.92861 0.93084 0.91341 0.91202 0.92024 0.92325 0.87516 0.83926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.50 11.01 101.05 1.11 1.62 16 2 O -0.35 -7.90 10.18 -35.23 -0.36 -8.26 16 3 C 0.05 0.96 6.28 37.16 0.23 1.19 16 4 C 0.14 3.29 5.72 -4.04 -0.02 3.27 16 5 N -0.57 -14.03 2.39 -173.24 -0.41 -14.44 16 6 C -0.23 -6.27 8.56 -15.06 -0.13 -6.40 16 7 H 0.05 1.56 7.92 -52.49 -0.42 1.14 16 8 C 0.02 0.60 4.96 -17.43 -0.09 0.52 16 9 N -0.89 -26.10 11.47 55.49 0.64 -25.46 16 10 Si 0.89 22.81 29.60 -169.99 -5.03 17.78 16 11 H -0.29 -7.22 7.11 56.52 0.40 -6.81 16 12 H -0.30 -7.55 7.11 56.52 0.40 -7.14 16 13 H -0.28 -7.26 7.11 56.52 0.40 -6.86 16 14 C 0.15 3.13 5.39 -4.04 -0.02 3.11 16 15 C 0.08 1.50 3.09 -26.47 -0.08 1.42 16 16 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 17 C -0.16 -2.50 5.54 -26.34 -0.15 -2.64 16 18 C -0.07 -1.06 6.23 -27.88 -0.17 -1.23 16 19 C -0.33 -5.38 9.97 -36.06 -0.36 -5.74 16 20 C 0.08 1.54 10.88 29.10 0.32 1.85 16 21 O -0.28 -6.22 9.64 -17.11 -0.16 -6.39 16 22 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 23 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 24 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 25 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 27 H 0.04 0.79 8.07 -51.93 -0.42 0.37 16 28 H 0.10 2.80 5.52 -51.93 -0.29 2.51 16 29 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 30 H 0.05 1.13 8.03 -51.93 -0.42 0.71 16 31 H 0.05 0.92 8.08 -51.93 -0.42 0.50 16 32 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 33 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 34 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 35 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 36 H 0.11 1.55 8.06 -52.49 -0.42 1.12 16 37 H 0.14 2.42 8.06 -52.49 -0.42 2.00 16 LS Contribution 305.69 15.07 4.61 4.61 Total: -1.00 -30.93 305.69 -6.25 -37.18 By element: Atomic # 1 Polarization: 4.20 SS G_CDS: -6.17 Total: -1.97 kcal Atomic # 6 Polarization: -3.68 SS G_CDS: 0.64 Total: -3.04 kcal Atomic # 7 Polarization: -40.13 SS G_CDS: 0.22 Total: -39.91 kcal Atomic # 8 Polarization: -14.13 SS G_CDS: -0.52 Total: -14.65 kcal Atomic # 14 Polarization: 22.81 SS G_CDS: -5.03 Total: 17.78 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -30.93 -6.25 -37.18 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835069279.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.941 kcal (2) G-P(sol) polarization free energy of solvation -30.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.181 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds