Wall clock time and date at job start Thu Apr 9 2020 12:15:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30664 * 1 3 3 Si 1.86800 * 120.00364 * 2 1 4 4 H 1.48501 * 109.47344 * 240.00188 * 3 2 1 5 5 H 1.48508 * 109.46757 * 359.97438 * 3 2 1 6 6 H 1.48492 * 109.47323 * 119.99863 * 3 2 1 7 7 C 1.40052 * 120.00038 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00406 * 180.02562 * 7 2 1 9 9 C 1.46382 * 119.99825 * 359.97438 * 7 2 1 10 10 O 1.21683 * 120.00064 * 0.02562 * 9 7 2 11 11 N 1.34774 * 119.99497 * 180.02562 * 9 7 2 12 12 N 1.40109 * 119.99481 * 180.02562 * 11 9 7 13 13 C 1.38605 * 119.99605 * 180.27784 * 12 11 9 14 14 N 1.32957 * 120.54012 * 359.72472 * 13 12 11 15 15 C 1.31764 * 120.69972 * 180.02562 * 14 13 12 16 16 N 1.31770 * 121.86079 * 0.02562 * 15 14 13 17 17 C 1.32565 * 121.01499 * 359.96953 * 16 15 14 18 18 C 1.38202 * 119.18407 * 359.73250 * 17 16 15 19 19 Cl 1.73598 * 120.84321 * 180.27015 * 18 17 16 20 20 H 0.97004 * 120.00383 * 0.02562 * 1 2 3 21 21 H 0.97000 * 120.00718 * 0.02562 * 11 9 7 22 22 H 0.97001 * 119.99794 * 359.97438 * 12 11 9 23 23 H 1.08003 * 119.07227 * 179.97438 * 15 14 13 24 24 H 1.07998 * 120.40299 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3066 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 3.0945 1.6964 -1.2125 5 1 1.2757 2.7465 -0.0006 6 1 3.0944 1.6963 1.2124 7 6 2.0069 -1.2129 -0.0005 8 1 3.0869 -1.2130 -0.0001 9 6 1.2750 -2.4806 -0.0005 10 8 0.0581 -2.4806 -0.0005 11 7 1.9489 -3.6477 -0.0005 12 7 1.2483 -4.8611 -0.0011 13 6 1.9414 -6.0614 0.0047 14 7 3.2709 -6.0739 0.0054 15 6 3.9329 -7.2131 0.0104 16 7 3.3148 -8.3768 0.0144 17 6 1.9910 -8.4470 0.0142 18 6 1.2541 -7.2779 0.0153 19 17 -0.4814 -7.3196 0.0221 20 1 -0.4851 0.8400 -0.0004 21 1 2.9189 -3.6478 -0.0002 22 1 0.2783 -4.8610 -0.0011 23 1 5.0128 -7.1926 0.0103 24 1 1.4945 -9.4062 0.0180 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000781814737.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:15:07 Heat of formation + Delta-G solvation = 38.102886 kcal Electronic energy + Delta-G solvation = -14421.983998 eV Core-core repulsion = 11590.773064 eV Total energy + Delta-G solvation = -2831.210934 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 242.031 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.76622 -37.91319 -36.60975 -35.45330 -32.97503 -32.56929 -31.66313 -29.11985 -26.26355 -24.23110 -23.31953 -20.63532 -18.86898 -17.72024 -16.85778 -16.04622 -15.85239 -15.29556 -15.11989 -14.76786 -13.86164 -13.50408 -13.26094 -12.68208 -12.13507 -11.74687 -11.46635 -11.32315 -11.10754 -11.01253 -10.73125 -10.45451 -10.00662 -9.12791 -9.10464 -8.90404 -8.07096 -7.00363 -6.44906 -4.90680 0.96763 1.40334 2.12364 2.60992 3.06010 3.11502 3.14533 3.88397 3.95634 4.14532 4.31002 4.33430 4.59538 5.10111 5.36867 5.51365 5.82505 6.36637 6.72679 7.19562 7.22304 7.72530 8.02130 8.12692 8.45332 8.76123 9.08973 10.26760 10.47153 Molecular weight = 242.03amu Principal moments of inertia in cm(-1) A = 0.039953 B = 0.005793 C = 0.005069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 700.659139 B = 4832.153212 C = 5522.952720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.761 5.761 2 C 0.086 3.914 3 Si 0.920 3.080 4 H -0.265 1.265 5 H -0.279 1.279 6 H -0.265 1.265 7 C -0.528 4.528 8 H 0.077 0.923 9 C 0.551 3.449 10 O -0.578 6.578 11 N -0.555 5.555 12 N -0.471 5.471 13 C 0.446 3.554 14 N -0.573 5.573 15 C 0.348 3.652 16 N -0.571 5.571 17 C 0.197 3.803 18 C -0.225 4.225 19 Cl -0.053 7.053 20 H 0.274 0.726 21 H 0.417 0.583 22 H 0.441 0.559 23 H 0.198 0.802 24 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.465 -11.313 0.023 12.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.389 5.389 2 C -0.135 4.135 3 Si 0.744 3.256 4 H -0.190 1.190 5 H -0.204 1.204 6 H -0.190 1.190 7 C -0.566 4.566 8 H 0.095 0.905 9 C 0.357 3.643 10 O -0.459 6.459 11 N -0.308 5.308 12 N -0.189 5.189 13 C 0.195 3.805 14 N -0.301 5.301 15 C 0.058 3.942 16 N -0.293 5.293 17 C 0.035 3.965 18 C -0.265 4.265 19 Cl -0.025 7.025 20 H 0.085 0.915 21 H 0.257 0.743 22 H 0.287 0.713 23 H 0.215 0.785 24 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 4.178 -10.859 0.020 11.635 hybrid contribution -0.573 0.717 0.003 0.918 sum 3.605 -10.142 0.023 10.763 Atomic orbital electron populations 1.69990 1.07192 1.28118 1.33595 1.25740 0.94805 1.00536 0.92432 0.86220 0.79665 0.79989 0.79738 1.18989 1.20359 1.18986 1.20628 0.93936 0.87611 1.54468 0.90506 1.18740 0.87730 0.80655 0.77182 1.90635 1.13767 1.85654 1.55824 1.46098 1.07819 0.93793 1.83097 1.43588 1.07887 0.96021 1.71432 1.18175 0.88827 0.84492 0.88964 1.68032 1.05132 1.32365 1.24540 1.24692 1.00790 0.81769 0.86980 1.68525 1.09003 1.29467 1.22307 1.22783 0.89254 0.96494 0.87929 1.21798 0.86800 0.95274 1.22671 1.98359 1.08143 1.98483 1.97510 0.91533 0.74330 0.71289 0.78513 0.81352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -21.70 11.83 55.55 0.66 -21.04 14 2 C 0.09 2.28 5.50 -17.37 -0.10 2.18 14 3 Si 0.92 19.09 29.56 -169.99 -5.02 14.07 14 4 H -0.27 -5.35 7.11 56.52 0.40 -4.95 14 5 H -0.28 -5.66 7.11 56.52 0.40 -5.26 14 6 H -0.27 -5.35 7.11 56.52 0.40 -4.95 14 7 C -0.53 -14.13 9.54 -35.63 -0.34 -14.47 14 8 H 0.08 1.85 7.85 -52.49 -0.41 1.44 14 9 C 0.55 15.07 7.86 -12.99 -0.10 14.97 14 10 O -0.58 -17.80 14.86 5.20 0.08 -17.72 14 11 N -0.56 -12.58 6.29 30.19 0.19 -12.39 14 12 N -0.47 -9.57 6.38 31.26 0.20 -9.37 14 13 C 0.45 7.79 7.64 -154.71 -1.18 6.60 14 14 N -0.57 -9.37 9.51 -13.78 -0.13 -9.50 14 15 C 0.35 4.64 12.28 -92.20 -1.13 3.51 14 16 N -0.57 -7.67 10.43 -14.64 -0.15 -7.83 14 17 C 0.20 2.53 11.11 -17.25 -0.19 2.33 14 18 C -0.22 -3.34 6.38 -39.04 -0.25 -3.59 14 19 Cl -0.05 -0.74 27.78 -51.86 -1.44 -2.18 14 20 H 0.27 7.07 8.29 -40.82 -0.34 6.73 14 21 H 0.42 8.63 7.97 -182.59 -1.46 7.17 14 22 H 0.44 9.21 6.80 -182.59 -1.24 7.97 14 23 H 0.20 1.85 8.06 -52.48 -0.42 1.43 14 24 H 0.17 1.60 8.06 -52.49 -0.42 1.18 14 LS Contribution 245.29 15.07 3.70 3.70 Total: -1.00 -31.66 245.29 -8.31 -39.96 By element: Atomic # 1 Polarization: 13.84 SS G_CDS: -3.09 Total: 10.76 kcal Atomic # 6 Polarization: 14.83 SS G_CDS: -3.29 Total: 11.54 kcal Atomic # 7 Polarization: -60.88 SS G_CDS: 0.76 Total: -60.12 kcal Atomic # 8 Polarization: -17.80 SS G_CDS: 0.08 Total: -17.72 kcal Atomic # 14 Polarization: 19.09 SS G_CDS: -5.02 Total: 14.07 kcal Atomic # 17 Polarization: -0.74 SS G_CDS: -1.44 Total: -2.18 kcal Total LS contribution 3.70 Total: 3.70 kcal Total: -31.66 -8.31 -39.96 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000781814737.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.067 kcal (2) G-P(sol) polarization free energy of solvation -31.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.965 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds