Wall clock time and date at job start Thu Apr 9 2020 12:15:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30664 * 1 3 3 Si 1.86800 * 120.00364 * 2 1 4 4 H 1.48501 * 109.47344 * 240.00188 * 3 2 1 5 5 H 1.48508 * 109.46757 * 359.97438 * 3 2 1 6 6 H 1.48492 * 109.47323 * 119.99863 * 3 2 1 7 7 C 1.40052 * 120.00038 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00406 * 180.02562 * 7 2 1 9 9 C 1.46382 * 119.99825 * 359.97438 * 7 2 1 10 10 O 1.21683 * 120.00064 * 0.02562 * 9 7 2 11 11 N 1.34774 * 119.99497 * 180.02562 * 9 7 2 12 12 N 1.40109 * 119.99481 * 180.02562 * 11 9 7 13 13 C 1.38605 * 119.99605 * 180.27784 * 12 11 9 14 14 N 1.32957 * 120.54012 * 359.72472 * 13 12 11 15 15 C 1.31764 * 120.69972 * 180.02562 * 14 13 12 16 16 N 1.31770 * 121.86079 * 0.02562 * 15 14 13 17 17 C 1.32565 * 121.01499 * 359.96953 * 16 15 14 18 18 C 1.38202 * 119.18407 * 359.73250 * 17 16 15 19 19 Cl 1.73598 * 120.84321 * 180.27015 * 18 17 16 20 20 H 0.97004 * 120.00383 * 0.02562 * 1 2 3 21 21 H 0.97000 * 120.00718 * 0.02562 * 11 9 7 22 22 H 0.97001 * 119.99794 * 359.97438 * 12 11 9 23 23 H 1.08003 * 119.07227 * 179.97438 * 15 14 13 24 24 H 1.07998 * 120.40299 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3066 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 3.0945 1.6964 -1.2125 5 1 1.2757 2.7465 -0.0006 6 1 3.0944 1.6963 1.2124 7 6 2.0069 -1.2129 -0.0005 8 1 3.0869 -1.2130 -0.0001 9 6 1.2750 -2.4806 -0.0005 10 8 0.0581 -2.4806 -0.0005 11 7 1.9489 -3.6477 -0.0005 12 7 1.2483 -4.8611 -0.0011 13 6 1.9414 -6.0614 0.0047 14 7 3.2709 -6.0739 0.0054 15 6 3.9329 -7.2131 0.0104 16 7 3.3148 -8.3768 0.0144 17 6 1.9910 -8.4470 0.0142 18 6 1.2541 -7.2779 0.0153 19 17 -0.4814 -7.3196 0.0221 20 1 -0.4851 0.8400 -0.0004 21 1 2.9189 -3.6478 -0.0002 22 1 0.2783 -4.8610 -0.0011 23 1 5.0128 -7.1926 0.0103 24 1 1.4945 -9.4062 0.0180 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000781814737.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:15:06 Heat of formation + Delta-G solvation = 15.818102 kcal Electronic energy + Delta-G solvation = -14422.950338 eV Core-core repulsion = 11590.773064 eV Total energy + Delta-G solvation = -2832.177275 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 242.031 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -41.98594 -39.75249 -37.78026 -37.09152 -34.77189 -34.12533 -33.11550 -30.65674 -28.17082 -25.41773 -24.63802 -22.47609 -20.41565 -19.14769 -18.53838 -17.61941 -17.18228 -16.95828 -16.39821 -16.17054 -15.51318 -15.06943 -14.63094 -14.54591 -13.36826 -13.29499 -13.23698 -12.76465 -12.72881 -12.45419 -12.18923 -12.07775 -11.38406 -10.96564 -10.37457 -10.33043 -10.15690 -8.64802 -8.41638 -6.97090 -0.15939 0.16244 0.94365 1.10461 1.44362 1.44802 1.58971 2.25497 2.34173 2.74174 2.81360 3.26525 3.41475 3.47835 3.83811 4.25175 4.61926 5.09390 5.24382 5.38849 5.70815 5.95929 6.18607 6.57616 6.74925 7.13513 7.22876 8.27332 8.53243 Molecular weight = 242.03amu Principal moments of inertia in cm(-1) A = 0.039953 B = 0.005793 C = 0.005069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 700.659139 B = 4832.153212 C = 5522.952720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.814 5.814 2 C 0.031 3.969 3 Si 1.007 2.993 4 H -0.253 1.253 5 H -0.274 1.274 6 H -0.253 1.253 7 C -0.555 4.555 8 H 0.098 0.902 9 C 0.538 3.462 10 O -0.625 6.625 11 N -0.548 5.548 12 N -0.494 5.494 13 C 0.432 3.568 14 N -0.591 5.591 15 C 0.348 3.652 16 N -0.565 5.565 17 C 0.210 3.790 18 C -0.229 4.229 19 Cl -0.047 7.047 20 H 0.279 0.721 21 H 0.425 0.575 22 H 0.435 0.565 23 H 0.237 0.763 24 H 0.207 0.793 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.413 -12.128 0.030 13.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.443 5.443 2 C -0.186 4.186 3 Si 0.825 3.175 4 H -0.176 1.176 5 H -0.198 1.198 6 H -0.176 1.176 7 C -0.592 4.592 8 H 0.116 0.884 9 C 0.344 3.656 10 O -0.510 6.510 11 N -0.299 5.299 12 N -0.215 5.215 13 C 0.184 3.816 14 N -0.318 5.318 15 C 0.059 3.941 16 N -0.285 5.285 17 C 0.047 3.953 18 C -0.268 4.268 19 Cl -0.019 7.019 20 H 0.089 0.911 21 H 0.266 0.734 22 H 0.279 0.721 23 H 0.253 0.747 24 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges 6.214 -11.773 0.027 13.312 hybrid contribution -1.111 0.686 0.002 1.305 sum 5.104 -11.087 0.028 12.205 Atomic orbital electron populations 1.70147 1.09559 1.29640 1.34936 1.27022 0.95645 1.04922 0.90990 0.84924 0.78081 0.73965 0.80494 1.17642 1.19845 1.17634 1.21196 0.95156 0.88192 1.54701 0.88425 1.19022 0.87344 0.82255 0.76981 1.90583 1.15629 1.86785 1.57996 1.45450 1.07888 0.94421 1.82145 1.43524 1.07497 0.95676 1.74809 1.18465 0.89648 0.84196 0.89251 1.68065 1.04828 1.34030 1.24885 1.25508 1.02322 0.80852 0.85372 1.68660 1.09246 1.29320 1.21319 1.23414 0.89002 0.97154 0.85693 1.21947 0.87378 0.94912 1.22607 1.98365 1.07606 1.98423 1.97499 0.91062 0.73388 0.72108 0.74718 0.77642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -47.72 11.83 21.84 0.26 -47.46 14 2 C 0.03 1.64 5.50 85.31 0.47 2.11 14 3 Si 1.01 38.80 29.56 68.60 2.03 40.83 14 4 H -0.25 -9.14 7.11 99.48 0.71 -8.44 14 5 H -0.27 -10.21 7.11 99.48 0.71 -9.50 14 6 H -0.25 -9.14 7.11 99.48 0.71 -8.43 14 7 C -0.55 -30.08 9.54 24.83 0.24 -29.84 14 8 H 0.10 4.67 7.85 -2.91 -0.02 4.65 14 9 C 0.54 30.41 7.86 86.36 0.68 31.09 14 10 O -0.62 -40.24 14.86 -4.29 -0.06 -40.31 14 11 N -0.55 -25.43 6.29 -176.63 -1.11 -26.54 14 12 N -0.49 -20.52 6.38 -55.00 -0.35 -20.87 14 13 C 0.43 14.84 7.64 133.18 1.02 15.86 14 14 N -0.59 -18.48 9.51 -197.51 -1.88 -20.36 14 15 C 0.35 8.30 12.28 180.90 2.22 10.52 14 16 N -0.57 -13.31 10.43 -200.24 -2.09 -15.40 14 17 C 0.21 4.75 11.11 84.57 0.94 5.69 14 18 C -0.23 -6.46 6.38 22.62 0.14 -6.32 14 19 Cl -0.05 -1.28 27.78 -2.72 -0.08 -1.35 14 20 H 0.28 14.80 8.29 -92.71 -0.77 14.03 14 21 H 0.42 17.79 7.97 -213.31 -1.70 16.09 14 22 H 0.43 18.88 6.80 -213.31 -1.45 17.44 14 23 H 0.24 3.54 8.06 -2.91 -0.02 3.52 14 24 H 0.21 3.05 8.06 -2.91 -0.02 3.03 14 Total: -1.00 -70.52 245.29 0.56 -69.96 By element: Atomic # 1 Polarization: 34.26 SS G_CDS: -1.87 Total: 32.39 kcal Atomic # 6 Polarization: 23.40 SS G_CDS: 5.71 Total: 29.11 kcal Atomic # 7 Polarization: -125.46 SS G_CDS: -5.17 Total: -130.63 kcal Atomic # 8 Polarization: -40.24 SS G_CDS: -0.06 Total: -40.31 kcal Atomic # 14 Polarization: 38.80 SS G_CDS: 2.03 Total: 40.83 kcal Atomic # 17 Polarization: -1.28 SS G_CDS: -0.08 Total: -1.35 kcal Total: -70.52 0.56 -69.96 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000781814737.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.776 kcal (2) G-P(sol) polarization free energy of solvation -70.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.958 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds