Wall clock time and date at job start Thu Apr 9 2020 12:15:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31418 * 1 3 3 Si 1.86802 * 120.00091 * 2 1 4 4 H 1.48498 * 109.46838 * 269.99568 * 3 2 1 5 5 H 1.48498 * 109.46979 * 29.99728 * 3 2 1 6 6 H 1.48491 * 109.46802 * 149.99954 * 3 2 1 7 7 C 1.38810 * 119.99454 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00665 * 0.02562 * 7 2 1 9 9 O 1.34856 * 119.99307 * 180.02562 * 7 2 1 10 10 C 1.34746 * 116.99998 * 180.02562 * 9 7 2 11 11 O 1.21516 * 119.99744 * 0.27172 * 10 9 7 12 12 C 1.47596 * 120.00353 * 180.02562 * 10 9 7 13 13 C 1.39664 * 120.13828 * 359.72162 * 12 10 9 14 14 C 1.38364 * 119.79801 * 179.79116 * 13 12 10 15 15 O 1.35938 * 119.96049 * 180.22447 * 14 13 12 16 16 C 1.38898 * 120.08114 * 0.46353 * 14 13 12 17 17 C 1.38219 * 120.27407 * 359.78814 * 16 14 13 18 18 C 1.38133 * 120.20325 * 359.97438 * 17 16 14 19 19 Cl 1.73603 * 120.04288 * 179.97438 * 18 17 16 20 20 H 0.96996 * 119.99880 * 0.02562 * 1 2 3 21 21 H 1.08004 * 120.09641 * 0.02562 * 13 12 10 22 22 H 0.96697 * 114.00185 * 270.23170 * 15 14 13 23 23 H 1.07999 * 119.86566 * 179.76460 * 16 14 13 24 24 H 1.07999 * 119.89611 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4958 2.0463 -1.4001 5 1 1.4456 2.6527 0.7000 6 1 3.5457 1.4401 0.7000 7 6 2.0081 -1.2022 0.0005 8 1 1.4681 -2.1375 0.0005 9 8 3.3567 -1.2022 0.0011 10 6 3.9684 -2.4027 0.0010 11 8 3.3066 -3.4218 -0.0044 12 6 5.4424 -2.4800 0.0022 13 6 6.2059 -1.3106 -0.0026 14 6 7.5872 -1.3912 0.0029 15 8 8.3336 -0.2551 0.0028 16 6 8.2121 -2.6317 0.0033 17 6 7.4596 -3.7911 0.0028 18 6 6.0799 -3.7240 0.0023 19 17 5.1389 -5.1828 0.0009 20 1 -0.4850 0.8400 -0.0004 21 1 5.7196 -0.3463 -0.0067 22 1 8.5499 0.0734 -0.8805 23 1 9.2905 -2.6906 0.0038 24 1 7.9519 -4.7523 0.0027 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000785867128.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:15:09 Heat of formation + Delta-G solvation = -91.463132 kcal Electronic energy + Delta-G solvation = -14697.943329 eV Core-core repulsion = 11796.528488 eV Total energy + Delta-G solvation = -2901.414840 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 242.018 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -39.99385 -38.83184 -37.00163 -35.72547 -35.25397 -32.43582 -31.35953 -29.46287 -25.93407 -23.66842 -22.51915 -20.47681 -18.32670 -17.95999 -17.03764 -16.47681 -15.67861 -15.27004 -14.89113 -14.66046 -13.95815 -13.83957 -12.99842 -12.70503 -12.45049 -12.26695 -11.98028 -11.31893 -11.04806 -10.87710 -10.70355 -10.55719 -10.42066 -9.77902 -9.06757 -8.91849 -8.75535 -8.47172 -6.46362 -4.16347 0.77952 1.11352 2.38873 3.01127 3.18746 3.20414 3.31547 3.86767 3.95410 4.14762 4.18255 4.76216 4.94051 5.06545 5.28610 5.40389 5.69658 5.90859 6.00482 6.23052 6.48460 6.54065 7.52915 7.64673 7.95477 8.56319 8.91178 9.59783 10.61269 Molecular weight = 242.02amu Principal moments of inertia in cm(-1) A = 0.023744 B = 0.009057 C = 0.006575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1178.967407 B = 3090.821536 C = 4257.406590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.865 5.865 2 C 0.065 3.935 3 Si 0.904 3.096 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.258 1.258 7 C -0.370 4.370 8 H 0.113 0.887 9 O -0.242 6.242 10 C 0.436 3.564 11 O -0.511 6.511 12 C -0.065 4.065 13 C -0.093 4.093 14 C 0.096 3.904 15 O -0.495 6.495 16 C -0.122 4.122 17 C -0.107 4.107 18 C -0.004 4.004 19 Cl -0.031 7.031 20 H 0.282 0.718 21 H 0.150 0.850 22 H 0.391 0.609 23 H 0.138 0.862 24 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.692 -2.393 -1.648 16.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.504 5.504 2 C -0.139 4.139 3 Si 0.729 3.271 4 H -0.197 1.197 5 H -0.205 1.205 6 H -0.182 1.182 7 C -0.445 4.445 8 H 0.131 0.869 9 O -0.151 6.151 10 C 0.282 3.718 11 O -0.405 6.405 12 C -0.067 4.067 13 C -0.112 4.112 14 C 0.052 3.948 15 O -0.305 6.305 16 C -0.141 4.141 17 C -0.126 4.126 18 C -0.032 4.032 19 Cl -0.001 7.001 20 H 0.092 0.908 21 H 0.167 0.833 22 H 0.247 0.753 23 H 0.156 0.844 24 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 16.166 -2.704 -1.036 16.423 hybrid contribution 0.154 0.750 -0.498 0.913 sum 16.320 -1.954 -1.534 16.508 Atomic orbital electron populations 1.69589 1.05766 1.28675 1.46338 1.24581 0.95036 0.98775 0.95555 0.86233 0.80453 0.81401 0.79027 1.19701 1.20545 1.18237 1.20739 0.75984 0.97158 1.50626 0.86928 1.83514 1.24055 1.30989 1.76535 1.20184 0.87212 0.83139 0.81251 1.90775 1.65892 1.35235 1.48636 1.19097 0.92230 0.91910 1.03460 1.21805 0.92836 0.99178 0.97413 1.18359 0.89128 0.85944 1.01412 1.84851 1.71898 1.40137 1.33629 1.21438 1.00625 0.91162 1.00861 1.20824 0.90917 0.99313 1.01539 1.21013 0.91918 0.88131 1.02129 1.98409 1.72592 1.33040 1.96108 0.90799 0.83254 0.75331 0.84439 0.84106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.22 13.96 55.49 0.77 -24.45 14 2 C 0.07 1.84 5.50 -17.52 -0.10 1.75 14 3 Si 0.90 20.97 28.62 -169.99 -4.86 16.10 14 4 H -0.27 -6.11 7.11 56.52 0.40 -5.70 14 5 H -0.28 -6.28 7.11 56.52 0.40 -5.88 14 6 H -0.26 -5.85 7.11 56.52 0.40 -5.45 14 7 C -0.37 -10.88 10.11 30.94 0.31 -10.57 14 8 H 0.11 3.64 7.09 -52.49 -0.37 3.27 14 9 O -0.24 -6.38 7.82 -21.68 -0.17 -6.55 14 10 C 0.44 10.59 7.83 34.55 0.27 10.86 14 11 O -0.51 -13.53 13.21 -19.28 -0.25 -13.78 14 12 C -0.06 -1.24 5.87 -104.97 -0.62 -1.86 14 13 C -0.09 -1.55 9.55 -39.00 -0.37 -1.92 14 14 C 0.10 1.28 6.69 -39.29 -0.26 1.02 14 15 O -0.50 -5.64 13.50 -19.54 -0.26 -5.90 14 16 C -0.12 -1.40 9.98 -39.34 -0.39 -1.79 14 17 C -0.11 -1.35 9.81 -39.63 -0.39 -1.74 14 18 C 0.00 -0.07 6.35 -39.04 -0.25 -0.32 14 19 Cl -0.03 -0.55 26.01 -51.86 -1.35 -1.90 14 20 H 0.28 7.47 8.31 -40.82 -0.34 7.13 14 21 H 0.15 2.55 7.61 -52.48 -0.40 2.15 14 22 H 0.39 2.45 9.06 45.56 0.41 2.86 14 23 H 0.14 1.15 8.06 -52.49 -0.42 0.73 14 24 H 0.14 1.36 8.06 -52.49 -0.42 0.94 14 LS Contribution 244.32 15.07 3.68 3.68 Total: -1.00 -32.73 244.32 -4.58 -37.31 By element: Atomic # 1 Polarization: 0.39 SS G_CDS: -0.34 Total: 0.05 kcal Atomic # 6 Polarization: -2.77 SS G_CDS: -1.79 Total: -4.57 kcal Atomic # 7 Polarization: -25.22 SS G_CDS: 0.77 Total: -24.45 kcal Atomic # 8 Polarization: -25.55 SS G_CDS: -0.69 Total: -26.24 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -4.86 Total: 16.10 kcal Atomic # 17 Polarization: -0.55 SS G_CDS: -1.35 Total: -1.90 kcal Total LS contribution 3.68 Total: 3.68 kcal Total: -32.73 -4.58 -37.31 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000785867128.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.151 kcal (2) G-P(sol) polarization free energy of solvation -32.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.312 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds