Wall clock time and date at job start Thu Apr 9 2020 12:15:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46902 * 111.00167 * 2 1 4 4 C 1.52999 * 109.47048 * 287.98896 * 3 2 1 5 5 H 1.08996 * 109.47050 * 59.99898 * 4 3 2 6 6 O 1.42905 * 109.47214 * 299.99718 * 4 3 2 7 7 C 1.50697 * 109.46815 * 180.02562 * 4 3 2 8 8 H 1.08000 * 120.00195 * 359.97438 * 7 4 3 9 9 C 1.37878 * 119.99960 * 180.02562 * 7 4 3 10 10 N 1.31520 * 120.00116 * 359.97438 * 9 7 4 11 11 Si 1.86797 * 120.00206 * 179.97438 * 9 7 4 12 12 H 1.48496 * 109.47200 * 359.97438 * 11 9 7 13 13 H 1.48497 * 109.47413 * 119.99834 * 11 9 7 14 14 H 1.48506 * 109.47298 * 239.99830 * 11 9 7 15 15 C 1.46898 * 111.00066 * 123.95670 * 2 1 3 16 16 C 1.54244 * 108.89656 * 67.09002 * 15 2 1 17 17 C 1.50473 * 108.52590 * 159.27051 * 16 15 2 18 18 C 1.54059 * 112.50262 * 94.15003 * 17 16 15 19 19 C 1.54064 * 112.81538 * 318.28139 * 18 17 16 20 20 C 1.50475 * 112.49737 * 318.28696 * 19 18 17 21 21 C 1.45547 * 108.89537 * 304.20924 * 15 2 1 22 22 H 1.08999 * 109.47001 * 66.08123 * 1 2 3 23 23 H 1.09001 * 109.47469 * 186.08062 * 1 2 3 24 24 H 1.08996 * 109.46929 * 306.08675 * 1 2 3 25 25 H 1.08998 * 109.46805 * 47.98970 * 3 2 1 26 26 H 1.08998 * 109.46554 * 167.99060 * 3 2 1 27 27 H 0.96693 * 113.99828 * 300.00210 * 6 4 3 28 28 H 0.96991 * 120.00037 * 180.02562 * 10 9 7 29 29 H 1.08996 * 108.87549 * 185.60021 * 15 2 1 30 30 H 1.09007 * 109.62572 * 278.97669 * 16 15 2 31 31 H 1.08997 * 109.62911 * 39.55265 * 16 15 2 32 32 H 1.09000 * 108.87450 * 333.36495 * 17 16 15 33 33 H 1.09001 * 108.87455 * 214.93076 * 17 16 15 34 34 H 1.09004 * 108.81354 * 197.42355 * 18 17 16 35 35 H 1.08997 * 108.72997 * 79.08709 * 18 17 16 36 36 H 1.09006 * 108.87823 * 197.50565 * 19 18 17 37 37 H 1.09002 * 108.87387 * 79.06799 * 19 18 17 38 38 H 1.08998 * 109.62628 * 334.44109 * 20 19 18 39 39 H 1.09000 * 109.62401 * 213.86427 * 20 19 18 40 40 H 1.09001 * 108.88779 * 303.44172 * 21 15 2 41 41 H 1.09001 * 108.89153 * 62.02727 * 21 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.7623 2.0072 -1.3720 5 1 0.6938 2.0282 -1.5858 6 8 2.4335 1.2394 -2.3731 7 6 2.3030 3.4138 -1.3721 8 1 2.7661 3.8144 -0.4825 9 6 2.2054 4.1898 -2.5077 10 7 1.6410 3.7021 -3.5909 11 14 2.8750 5.9336 -2.5077 12 1 3.4560 6.2408 -1.1761 13 1 3.9268 6.0601 -3.5482 14 1 1.7739 6.8867 -2.7986 15 6 1.9954 -0.7660 1.1375 16 6 1.6441 -2.2552 0.9424 17 6 2.5790 -3.0812 1.7838 18 6 1.9869 -3.4178 3.1657 19 6 1.2544 -2.2246 3.8085 20 6 1.9945 -0.9274 3.6240 21 6 1.4416 -0.2222 2.3687 22 1 -0.3633 0.4167 -0.9394 23 1 -0.3634 -1.0219 0.1089 24 1 -0.3633 0.6053 0.8305 25 1 1.4836 1.9571 0.7636 26 1 3.0640 1.3503 0.2138 27 1 3.3900 1.1778 -2.2459 28 1 1.5727 4.2479 -4.3898 29 1 3.0800 -0.6609 1.1617 30 1 0.6154 -2.4328 1.2562 31 1 1.7613 -2.5246 -0.1072 32 1 3.5086 -2.5294 1.9232 33 1 2.7983 -4.0106 1.2582 34 1 2.7944 -3.7322 3.8269 35 1 1.2837 -4.2430 3.0536 36 1 1.1379 -2.4155 4.8754 37 1 0.2658 -2.1337 3.3585 38 1 3.0578 -1.1281 3.4929 39 1 1.8437 -0.2925 4.4971 40 1 1.6824 0.8394 2.4253 41 1 0.3578 -0.3374 2.3493 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000809569566.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:15:15 Heat of formation + Delta-G solvation = -62.866017 kcal Electronic energy + Delta-G solvation = -18495.151336 eV Core-core repulsion = 15795.318436 eV Total energy + Delta-G solvation = -2699.832901 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.67157 -36.50859 -34.67004 -32.06960 -32.02157 -30.68643 -28.19787 -26.07792 -24.71304 -24.54357 -22.65538 -20.44231 -19.30857 -19.18106 -16.96890 -15.93441 -15.12025 -14.85568 -14.68552 -14.44566 -14.16033 -13.72894 -13.30173 -13.23761 -12.94787 -12.74537 -12.42508 -12.03026 -11.86561 -11.34909 -11.07432 -10.95352 -10.89308 -10.71627 -10.69515 -10.51804 -10.41877 -10.35908 -10.26288 -10.10225 -9.81434 -8.94035 -8.52684 -8.03414 -7.47040 -5.95927 -4.14081 3.28757 3.36914 3.40135 4.35951 4.53006 4.68355 4.80318 4.91215 5.16820 5.22896 5.29597 5.31846 5.36595 5.54102 5.67626 5.73887 5.78828 5.90732 5.94598 6.05359 6.07630 6.12268 6.17148 6.20706 6.23260 6.31837 6.33925 6.41538 6.50780 6.57232 6.60716 6.72343 6.90429 7.64705 7.74799 7.84593 7.97273 8.26856 8.90622 9.52258 9.69479 11.08224 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.044823 B = 0.005184 C = 0.004964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 624.530156 B = 5399.693632 C = 5639.586602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.526 5.526 3 C 0.031 3.969 4 C 0.238 3.762 5 H 0.052 0.948 6 O -0.554 6.554 7 C -0.573 4.573 8 H 0.054 0.946 9 C 0.080 3.920 10 N -0.859 5.859 11 Si 0.887 3.113 12 H -0.273 1.273 13 H -0.283 1.283 14 H -0.283 1.283 15 C 0.085 3.915 16 C -0.105 4.105 17 C -0.117 4.117 18 C -0.115 4.115 19 C -0.117 4.117 20 C -0.112 4.112 21 C -0.151 4.151 22 H 0.071 0.929 23 H 0.057 0.943 24 H 0.018 0.982 25 H 0.026 0.974 26 H 0.059 0.941 27 H 0.341 0.659 28 H 0.259 0.741 29 H 0.071 0.929 30 H 0.058 0.942 31 H 0.074 0.926 32 H 0.060 0.940 33 H 0.057 0.943 34 H 0.054 0.946 35 H 0.055 0.945 36 H 0.053 0.947 37 H 0.059 0.941 38 H 0.064 0.936 39 H 0.057 0.943 40 H 0.061 0.939 41 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.052 -11.535 12.847 17.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.248 5.248 3 C -0.097 4.097 4 C 0.180 3.820 5 H 0.070 0.930 6 O -0.355 6.355 7 C -0.612 4.612 8 H 0.072 0.928 9 C -0.126 4.126 10 N -0.495 5.495 11 Si 0.714 3.286 12 H -0.198 1.198 13 H -0.209 1.209 14 H -0.209 1.209 15 C -0.024 4.024 16 C -0.143 4.143 17 C -0.155 4.155 18 C -0.153 4.153 19 C -0.155 4.155 20 C -0.151 4.151 21 C -0.190 4.190 22 H 0.089 0.911 23 H 0.075 0.925 24 H 0.036 0.964 25 H 0.045 0.955 26 H 0.077 0.923 27 H 0.184 0.816 28 H 0.069 0.931 29 H 0.089 0.911 30 H 0.077 0.923 31 H 0.093 0.907 32 H 0.079 0.921 33 H 0.076 0.924 34 H 0.073 0.927 35 H 0.074 0.926 36 H 0.072 0.928 37 H 0.078 0.922 38 H 0.083 0.917 39 H 0.076 0.924 40 H 0.079 0.921 41 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -0.583 -11.789 11.975 16.814 hybrid contribution 0.583 1.624 1.048 2.019 sum 0.000 -10.165 13.023 16.521 Atomic orbital electron populations 1.22367 0.88678 1.00223 1.00980 1.62362 1.07114 1.15154 1.40217 1.23106 0.98502 0.86644 1.01424 1.19281 0.93970 0.87466 0.81251 0.92989 1.86560 1.21186 1.74774 1.52986 1.21720 1.41735 0.99209 0.98502 0.92811 1.25021 0.94307 0.97789 0.95502 1.70097 1.41533 1.35952 1.01884 0.86648 0.78843 0.84987 0.78071 1.19787 1.20864 1.20938 1.20634 0.99427 0.93567 0.88748 1.21342 0.98934 0.93722 1.00309 1.21299 0.99302 0.99861 0.95016 1.21912 0.99502 0.97526 0.96358 1.21333 0.99584 0.94810 0.99739 1.21248 1.00296 0.96050 0.97465 1.21272 1.01293 1.00600 0.95829 0.91066 0.92467 0.96358 0.95538 0.92284 0.81622 0.93108 0.91104 0.92304 0.90735 0.92136 0.92435 0.92668 0.92627 0.92831 0.92217 0.91704 0.92410 0.92062 0.91910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.45 8.29 60.06 0.50 0.94 16 2 N -0.53 -9.64 4.50 -238.39 -1.07 -10.72 16 3 C 0.03 0.65 3.86 -3.82 -0.01 0.63 16 4 C 0.24 6.16 2.82 -27.88 -0.08 6.08 16 5 H 0.05 1.48 6.90 -51.93 -0.36 1.12 16 6 O -0.55 -14.78 12.60 -35.23 -0.44 -15.22 16 7 C -0.57 -15.97 8.76 -34.44 -0.30 -16.27 16 8 H 0.05 1.47 7.74 -52.49 -0.41 1.06 16 9 C 0.08 2.26 5.40 -17.82 -0.10 2.17 16 10 N -0.86 -25.80 12.84 55.43 0.71 -25.09 16 11 Si 0.89 21.37 29.54 -169.99 -5.02 16.35 16 12 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 13 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 14 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 15 C 0.08 1.26 1.73 -70.58 -0.12 1.13 16 16 C -0.11 -1.36 4.28 -27.34 -0.12 -1.47 16 17 C -0.12 -1.26 5.31 -27.44 -0.15 -1.41 16 18 C -0.12 -1.10 5.85 -25.62 -0.15 -1.25 16 19 C -0.12 -1.17 5.31 -27.44 -0.15 -1.32 16 20 C -0.11 -1.25 5.61 -27.35 -0.15 -1.40 16 21 C -0.15 -2.05 3.93 -29.60 -0.12 -2.16 16 22 H 0.07 1.38 6.96 -51.93 -0.36 1.02 16 23 H 0.06 0.86 6.58 -51.93 -0.34 0.51 16 24 H 0.02 0.30 6.72 -51.93 -0.35 -0.05 16 25 H 0.03 0.56 6.99 -51.93 -0.36 0.19 16 26 H 0.06 1.22 7.80 -51.93 -0.40 0.82 16 27 H 0.34 8.21 9.04 45.56 0.41 8.62 16 28 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 29 H 0.07 1.10 7.17 -51.93 -0.37 0.72 16 30 H 0.06 0.73 6.24 -51.92 -0.32 0.41 16 31 H 0.07 1.07 8.13 -51.93 -0.42 0.64 16 32 H 0.06 0.67 6.63 -51.93 -0.34 0.33 16 33 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.06 0.63 6.63 -51.93 -0.34 0.28 16 38 H 0.06 0.72 6.98 -51.93 -0.36 0.36 16 39 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 40 H 0.06 0.92 6.57 -51.93 -0.34 0.58 16 41 H 0.06 0.86 5.77 -51.93 -0.30 0.56 16 LS Contribution 303.80 15.07 4.58 4.58 Total: -1.00 -30.06 303.80 -8.42 -38.48 By element: Atomic # 1 Polarization: 12.18 SS G_CDS: -6.23 Total: 5.94 kcal Atomic # 6 Polarization: -13.39 SS G_CDS: -0.94 Total: -14.33 kcal Atomic # 7 Polarization: -35.44 SS G_CDS: -0.36 Total: -35.81 kcal Atomic # 8 Polarization: -14.78 SS G_CDS: -0.44 Total: -15.22 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -30.06 -8.42 -38.48 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000809569566.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.383 kcal (2) G-P(sol) polarization free energy of solvation -30.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.483 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds