Wall clock time and date at job start Thu Apr 9 2020 12:15:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46902 * 111.00167 * 2 1 4 4 C 1.52999 * 109.47048 * 287.98896 * 3 2 1 5 5 H 1.08996 * 109.47050 * 59.99898 * 4 3 2 6 6 O 1.42905 * 109.47214 * 299.99718 * 4 3 2 7 7 C 1.50697 * 109.46815 * 180.02562 * 4 3 2 8 8 H 1.08000 * 120.00195 * 359.97438 * 7 4 3 9 9 C 1.37878 * 119.99960 * 180.02562 * 7 4 3 10 10 N 1.31520 * 120.00116 * 359.97438 * 9 7 4 11 11 Si 1.86797 * 120.00206 * 179.97438 * 9 7 4 12 12 H 1.48496 * 109.47200 * 359.97438 * 11 9 7 13 13 H 1.48497 * 109.47413 * 119.99834 * 11 9 7 14 14 H 1.48506 * 109.47298 * 239.99830 * 11 9 7 15 15 C 1.46898 * 111.00066 * 123.95670 * 2 1 3 16 16 C 1.54244 * 108.89656 * 67.09002 * 15 2 1 17 17 C 1.50473 * 108.52590 * 159.27051 * 16 15 2 18 18 C 1.54059 * 112.50262 * 94.15003 * 17 16 15 19 19 C 1.54064 * 112.81538 * 318.28139 * 18 17 16 20 20 C 1.50475 * 112.49737 * 318.28696 * 19 18 17 21 21 C 1.45547 * 108.89537 * 304.20924 * 15 2 1 22 22 H 1.08999 * 109.47001 * 66.08123 * 1 2 3 23 23 H 1.09001 * 109.47469 * 186.08062 * 1 2 3 24 24 H 1.08996 * 109.46929 * 306.08675 * 1 2 3 25 25 H 1.08998 * 109.46805 * 47.98970 * 3 2 1 26 26 H 1.08998 * 109.46554 * 167.99060 * 3 2 1 27 27 H 0.96693 * 113.99828 * 300.00210 * 6 4 3 28 28 H 0.96991 * 120.00037 * 180.02562 * 10 9 7 29 29 H 1.08996 * 108.87549 * 185.60021 * 15 2 1 30 30 H 1.09007 * 109.62572 * 278.97669 * 16 15 2 31 31 H 1.08997 * 109.62911 * 39.55265 * 16 15 2 32 32 H 1.09000 * 108.87450 * 333.36495 * 17 16 15 33 33 H 1.09001 * 108.87455 * 214.93076 * 17 16 15 34 34 H 1.09004 * 108.81354 * 197.42355 * 18 17 16 35 35 H 1.08997 * 108.72997 * 79.08709 * 18 17 16 36 36 H 1.09006 * 108.87823 * 197.50565 * 19 18 17 37 37 H 1.09002 * 108.87387 * 79.06799 * 19 18 17 38 38 H 1.08998 * 109.62628 * 334.44109 * 20 19 18 39 39 H 1.09000 * 109.62401 * 213.86427 * 20 19 18 40 40 H 1.09001 * 108.88779 * 303.44172 * 21 15 2 41 41 H 1.09001 * 108.89153 * 62.02727 * 21 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.7623 2.0072 -1.3720 5 1 0.6938 2.0282 -1.5858 6 8 2.4335 1.2394 -2.3731 7 6 2.3030 3.4138 -1.3721 8 1 2.7661 3.8144 -0.4825 9 6 2.2054 4.1898 -2.5077 10 7 1.6410 3.7021 -3.5909 11 14 2.8750 5.9336 -2.5077 12 1 3.4560 6.2408 -1.1761 13 1 3.9268 6.0601 -3.5482 14 1 1.7739 6.8867 -2.7986 15 6 1.9954 -0.7660 1.1375 16 6 1.6441 -2.2552 0.9424 17 6 2.5790 -3.0812 1.7838 18 6 1.9869 -3.4178 3.1657 19 6 1.2544 -2.2246 3.8085 20 6 1.9945 -0.9274 3.6240 21 6 1.4416 -0.2222 2.3687 22 1 -0.3633 0.4167 -0.9394 23 1 -0.3634 -1.0219 0.1089 24 1 -0.3633 0.6053 0.8305 25 1 1.4836 1.9571 0.7636 26 1 3.0640 1.3503 0.2138 27 1 3.3900 1.1778 -2.2459 28 1 1.5727 4.2479 -4.3898 29 1 3.0800 -0.6609 1.1617 30 1 0.6154 -2.4328 1.2562 31 1 1.7613 -2.5246 -0.1072 32 1 3.5086 -2.5294 1.9232 33 1 2.7983 -4.0106 1.2582 34 1 2.7944 -3.7322 3.8269 35 1 1.2837 -4.2430 3.0536 36 1 1.1379 -2.4155 4.8754 37 1 0.2658 -2.1337 3.3585 38 1 3.0578 -1.1281 3.4929 39 1 1.8437 -0.2925 4.4971 40 1 1.6824 0.8394 2.4253 41 1 0.3578 -0.3374 2.3493 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000809569566.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:15:14 Heat of formation + Delta-G solvation = -83.721869 kcal Electronic energy + Delta-G solvation = -18496.055714 eV Core-core repulsion = 15795.318436 eV Total energy + Delta-G solvation = -2700.737278 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.86346 -38.09059 -36.29852 -34.21215 -33.00250 -31.96147 -29.98458 -27.72742 -26.13637 -25.59856 -24.02640 -22.12043 -20.62832 -20.05983 -19.03989 -17.13432 -16.66306 -16.52278 -16.19206 -16.11118 -15.42206 -15.09390 -14.71994 -14.62528 -14.34397 -14.02737 -13.78174 -13.23510 -13.08827 -12.92718 -12.84136 -12.76092 -12.60722 -12.16782 -12.07521 -11.78204 -11.68315 -11.40866 -11.36992 -11.16762 -11.01306 -10.96002 -10.70274 -10.07040 -8.98267 -8.12845 -6.39266 1.39250 1.40168 1.52589 2.38358 3.10944 3.14663 3.66691 3.85633 4.04206 4.18505 4.28969 4.30400 4.33726 4.40250 4.44463 4.49883 4.55792 4.61068 4.72896 4.78187 4.92007 4.96017 5.02023 5.07338 5.10157 5.13048 5.23962 5.33922 5.36598 5.38827 5.48399 5.54843 5.61091 5.61902 5.77247 6.04355 6.26535 6.40931 6.75305 7.35252 7.63990 8.91925 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.044823 B = 0.005184 C = 0.004964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 624.530156 B = 5399.693632 C = 5639.586602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 N -0.541 5.541 3 C 0.052 3.948 4 C 0.239 3.761 5 H 0.016 0.984 6 O -0.570 6.570 7 C -0.588 4.588 8 H 0.057 0.943 9 C 0.026 3.974 10 N -0.900 5.900 11 Si 0.961 3.039 12 H -0.263 1.263 13 H -0.278 1.278 14 H -0.279 1.279 15 C 0.088 3.912 16 C -0.098 4.098 17 C -0.115 4.115 18 C -0.112 4.112 19 C -0.117 4.117 20 C -0.106 4.106 21 C -0.147 4.147 22 H 0.041 0.959 23 H 0.082 0.918 24 H 0.025 0.975 25 H 0.024 0.976 26 H 0.062 0.938 27 H 0.351 0.649 28 H 0.261 0.739 29 H 0.064 0.936 30 H 0.065 0.935 31 H 0.058 0.942 32 H 0.056 0.944 33 H 0.066 0.934 34 H 0.067 0.933 35 H 0.064 0.936 36 H 0.069 0.931 37 H 0.054 0.946 38 H 0.066 0.934 39 H 0.065 0.935 40 H 0.042 0.958 41 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.572 -12.102 14.653 19.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 N -0.264 5.264 3 C -0.076 4.076 4 C 0.181 3.819 5 H 0.034 0.966 6 O -0.373 6.373 7 C -0.627 4.627 8 H 0.075 0.925 9 C -0.176 4.176 10 N -0.538 5.538 11 Si 0.785 3.215 12 H -0.187 1.187 13 H -0.203 1.203 14 H -0.204 1.204 15 C -0.020 4.020 16 C -0.135 4.135 17 C -0.153 4.153 18 C -0.150 4.150 19 C -0.154 4.154 20 C -0.145 4.145 21 C -0.186 4.186 22 H 0.059 0.941 23 H 0.100 0.900 24 H 0.043 0.957 25 H 0.042 0.958 26 H 0.080 0.920 27 H 0.195 0.805 28 H 0.070 0.930 29 H 0.082 0.918 30 H 0.084 0.916 31 H 0.077 0.923 32 H 0.075 0.925 33 H 0.085 0.915 34 H 0.086 0.914 35 H 0.083 0.917 36 H 0.087 0.913 37 H 0.073 0.927 38 H 0.085 0.915 39 H 0.084 0.916 40 H 0.060 0.940 41 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 0.047 -12.369 13.804 18.535 hybrid contribution 0.374 1.748 0.475 1.850 sum 0.421 -10.621 14.279 17.801 Atomic orbital electron populations 1.22300 0.88145 1.01621 0.99611 1.62268 1.07748 1.13629 1.42717 1.22655 0.98727 0.88087 0.98148 1.19143 0.91815 0.87535 0.83442 0.96576 1.86501 1.22072 1.74835 1.53863 1.22095 1.41531 1.00349 0.98690 0.92459 1.25906 0.94455 1.02272 0.95013 1.70238 1.43005 1.37861 1.02661 0.85498 0.78173 0.79373 0.78438 1.18747 1.20342 1.20447 1.20715 0.98906 0.94303 0.88035 1.21272 0.99980 0.92379 0.99909 1.21269 0.98562 0.99755 0.95684 1.21894 1.00055 0.97560 0.95469 1.21325 0.99070 0.94199 1.00815 1.21213 1.00393 0.96630 0.96228 1.21199 1.01257 0.99625 0.96474 0.94055 0.89985 0.95694 0.95789 0.91982 0.80518 0.92997 0.91759 0.91614 0.92335 0.92484 0.91483 0.91433 0.91698 0.91253 0.92717 0.91527 0.91587 0.93971 0.91957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.09 8.29 127.69 1.06 2.15 16 2 N -0.54 -19.92 4.50 -908.13 -4.09 -24.01 16 3 C 0.05 2.21 3.86 86.30 0.33 2.55 16 4 C 0.24 12.69 2.82 29.85 0.08 12.77 16 5 H 0.02 0.98 6.90 -2.39 -0.02 0.96 16 6 O -0.57 -31.22 12.60 -148.98 -1.88 -33.09 16 7 C -0.59 -33.18 8.76 25.60 0.22 -32.96 16 8 H 0.06 3.12 7.74 -2.91 -0.02 3.10 16 9 C 0.03 1.47 5.40 84.65 0.46 1.93 16 10 N -0.90 -55.14 12.84 21.45 0.28 -54.87 16 11 Si 0.96 44.02 29.54 68.60 2.03 46.05 16 12 H -0.26 -11.54 7.11 99.48 0.71 -10.83 16 13 H -0.28 -12.44 7.11 99.48 0.71 -11.74 16 14 H -0.28 -12.49 7.11 99.48 0.71 -11.79 16 15 C 0.09 2.54 1.73 43.06 0.07 2.61 16 16 C -0.10 -2.37 4.28 30.20 0.13 -2.24 16 17 C -0.11 -2.21 5.31 30.13 0.16 -2.05 16 18 C -0.11 -1.78 5.85 31.31 0.18 -1.60 16 19 C -0.12 -1.98 5.31 30.14 0.16 -1.82 16 20 C -0.11 -2.12 5.61 30.19 0.17 -1.95 16 21 C -0.15 -3.79 3.93 28.74 0.11 -3.68 16 22 H 0.04 1.66 6.96 -2.39 -0.02 1.65 16 23 H 0.08 2.39 6.58 -2.39 -0.02 2.38 16 24 H 0.02 0.82 6.72 -2.39 -0.02 0.80 16 25 H 0.02 1.02 6.99 -2.39 -0.02 1.01 16 26 H 0.06 2.58 7.80 -2.39 -0.02 2.56 16 27 H 0.35 17.23 9.04 -74.06 -0.67 16.56 16 28 H 0.26 15.04 8.31 -92.71 -0.77 14.27 16 29 H 0.06 1.94 7.17 -2.39 -0.02 1.92 16 30 H 0.07 1.50 6.24 -2.38 -0.01 1.49 16 31 H 0.06 1.62 8.13 -2.39 -0.02 1.60 16 32 H 0.06 1.15 6.63 -2.39 -0.02 1.13 16 33 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 34 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 35 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 36 H 0.07 0.99 8.14 -2.38 -0.02 0.97 16 37 H 0.05 1.00 6.63 -2.39 -0.02 0.98 16 38 H 0.07 1.32 6.98 -2.39 -0.02 1.30 16 39 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 40 H 0.04 1.24 6.57 -2.39 -0.02 1.23 16 41 H 0.06 1.61 5.77 -2.39 -0.01 1.60 16 Total: -1.00 -64.68 303.80 -0.19 -64.86 By element: Atomic # 1 Polarization: 25.01 SS G_CDS: 0.33 Total: 25.34 kcal Atomic # 6 Polarization: -27.43 SS G_CDS: 3.15 Total: -24.28 kcal Atomic # 7 Polarization: -75.06 SS G_CDS: -3.81 Total: -78.88 kcal Atomic # 8 Polarization: -31.22 SS G_CDS: -1.88 Total: -33.09 kcal Atomic # 14 Polarization: 44.02 SS G_CDS: 2.03 Total: 46.05 kcal Total: -64.68 -0.19 -64.86 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000809569566.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.858 kcal (2) G-P(sol) polarization free energy of solvation -64.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.864 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds