Wall clock time and date at job start Thu Apr 9 2020 12:15:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31431 * 1 3 3 Si 1.86797 * 120.00186 * 2 1 4 4 H 1.48500 * 109.47098 * 270.00521 * 3 2 1 5 5 H 1.48493 * 109.47198 * 30.00381 * 3 2 1 6 6 H 1.48495 * 109.46924 * 150.00375 * 3 2 1 7 7 C 1.38789 * 119.99426 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00027 * 179.97438 * 7 2 1 9 9 O 1.34867 * 120.00422 * 359.97438 * 7 2 1 10 10 C 1.34772 * 117.00185 * 180.02562 * 9 7 2 11 11 O 1.21545 * 119.99783 * 359.97438 * 10 9 7 12 12 C 1.47416 * 119.99944 * 180.02562 * 10 9 7 13 13 C 1.39829 * 120.08970 * 359.97438 * 12 10 9 14 14 C 1.37686 * 119.91696 * 179.74426 * 13 12 10 15 15 C 1.38990 * 120.11176 * 0.53257 * 14 13 12 16 16 O 1.35725 * 119.90714 * 179.76400 * 15 14 13 17 17 C 1.39099 * 120.18876 * 359.48707 * 15 14 13 18 18 Cl 1.73593 * 119.96598 * 180.25422 * 17 15 14 19 19 C 1.37792 * 120.07007 * 0.23279 * 17 15 14 20 20 H 0.97002 * 119.99568 * 359.97438 * 1 2 3 21 21 H 1.07994 * 120.03993 * 0.02562 * 13 12 10 22 22 H 1.07998 * 119.94145 * 180.29909 * 14 13 12 23 23 H 0.96696 * 114.00142 * 269.72485 * 16 15 14 24 24 H 1.08003 * 120.04967 * 180.02562 * 19 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3143 0.0000 0.0000 3 14 2.2484 1.6177 0.0000 4 1 2.4958 2.0464 -1.4001 5 1 1.4459 2.6526 0.7001 6 1 3.5459 1.4400 0.6999 7 6 2.0081 -1.2020 -0.0005 8 1 3.0882 -1.2021 -0.0010 9 8 1.3338 -2.3700 -0.0005 10 6 2.0677 -3.5003 -0.0005 11 8 3.2815 -3.4367 -0.0010 12 6 1.3984 -4.8138 -0.0011 13 6 0.0021 -4.8890 -0.0011 14 6 -0.6193 -6.1176 -0.0070 15 6 0.1388 -7.2826 -0.0017 16 8 -0.4782 -8.4915 -0.0027 17 6 1.5280 -7.2130 -0.0013 18 17 2.4692 -8.6716 -0.0014 19 6 2.1580 -5.9875 -0.0012 20 1 -0.4849 0.8401 0.0004 21 1 -0.5880 -3.9846 -0.0011 22 1 -1.6977 -6.1762 -0.0119 23 1 -0.6572 -8.8424 0.8804 24 1 3.2366 -5.9339 -0.0013 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000848950593.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:15:27 Heat of formation + Delta-G solvation = -104.649371 kcal Electronic energy + Delta-G solvation = -14395.033372 eV Core-core repulsion = 11493.046734 eV Total energy + Delta-G solvation = -2901.986638 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 242.018 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -39.90491 -38.78878 -36.67186 -36.34268 -35.15161 -32.30929 -30.75683 -29.95228 -25.68240 -23.46502 -22.64057 -20.46286 -18.54108 -17.87699 -17.38282 -15.91440 -15.55452 -15.13653 -14.63921 -14.48184 -14.37273 -13.71678 -13.16822 -12.77338 -12.37478 -11.93747 -11.69464 -11.51567 -11.17437 -11.10691 -10.54201 -10.51823 -10.48729 -9.95714 -9.21967 -8.85630 -8.71112 -8.50857 -6.56838 -4.18522 0.83725 1.28044 2.12421 3.00130 3.12939 3.18478 3.21782 3.82351 3.99554 4.15021 4.41185 4.87955 5.04490 5.36021 5.39531 5.47478 5.85305 5.89999 6.26397 6.48647 6.68304 6.81977 7.26851 7.49162 7.80736 8.57839 8.91802 9.69254 10.60398 Molecular weight = 242.02amu Principal moments of inertia in cm(-1) A = 0.050247 B = 0.005461 C = 0.004936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 557.109762 B = 5126.057357 C = 5670.766362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.856 5.856 2 C 0.041 3.959 3 Si 0.947 3.053 4 H -0.272 1.272 5 H -0.277 1.277 6 H -0.265 1.265 7 C -0.373 4.373 8 H 0.100 0.900 9 O -0.201 6.201 10 C 0.429 3.571 11 O -0.551 6.551 12 C -0.081 4.081 13 C -0.053 4.053 14 C -0.143 4.143 15 C 0.123 3.877 16 O -0.488 6.488 17 C -0.074 4.074 18 Cl -0.063 7.063 19 C -0.050 4.050 20 H 0.273 0.727 21 H 0.153 0.847 22 H 0.142 0.858 23 H 0.391 0.609 24 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.045 -12.002 1.674 12.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.492 5.492 2 C -0.164 4.164 3 Si 0.771 3.229 4 H -0.197 1.197 5 H -0.202 1.202 6 H -0.189 1.189 7 C -0.448 4.448 8 H 0.117 0.883 9 O -0.108 6.108 10 C 0.277 3.723 11 O -0.450 6.450 12 C -0.083 4.083 13 C -0.072 4.072 14 C -0.162 4.162 15 C 0.077 3.923 16 O -0.298 6.298 17 C -0.101 4.101 18 Cl -0.034 7.034 19 C -0.069 4.069 20 H 0.083 0.917 21 H 0.171 0.829 22 H 0.159 0.841 23 H 0.247 0.753 24 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -1.822 -11.873 1.070 12.060 hybrid contribution 0.428 0.539 0.481 0.840 sum -1.394 -11.334 1.551 11.524 Atomic orbital electron populations 1.69975 1.06109 1.28146 1.44945 1.25417 0.95905 0.99067 0.95993 0.85603 0.79089 0.79258 0.78902 1.19707 1.20179 1.18920 1.21359 0.92670 0.79595 1.51210 0.88280 1.83883 1.39194 1.13255 1.74461 1.20484 0.85876 0.85239 0.80675 1.90653 1.14928 1.87739 1.51650 1.19366 0.93416 0.91627 1.03878 1.21649 0.93777 0.98497 0.93237 1.21332 1.00724 0.90861 1.03235 1.18342 0.88140 0.85694 1.00159 1.84780 1.79385 1.32175 1.33482 1.21116 0.91062 0.88226 1.09686 1.98348 1.72343 1.35668 1.97088 1.21022 1.01420 0.88706 0.95782 0.91749 0.82913 0.84061 0.75273 0.83414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -23.94 13.67 55.49 0.76 -23.19 14 2 C 0.04 1.12 5.49 -17.52 -0.10 1.03 14 3 Si 0.95 20.53 29.55 -169.99 -5.02 15.51 14 4 H -0.27 -5.74 7.11 56.52 0.40 -5.34 14 5 H -0.28 -5.76 7.11 56.52 0.40 -5.35 14 6 H -0.26 -5.67 7.11 56.52 0.40 -5.26 14 7 C -0.37 -10.69 9.65 30.94 0.30 -10.39 14 8 H 0.10 2.86 6.86 -52.48 -0.36 2.50 14 9 O -0.20 -5.59 8.98 -21.78 -0.20 -5.78 14 10 C 0.43 10.68 7.83 34.47 0.27 10.95 14 11 O -0.55 -14.85 15.59 -19.30 -0.30 -15.15 14 12 C -0.08 -1.60 5.87 -104.98 -0.62 -2.22 14 13 C -0.05 -0.90 9.61 -39.19 -0.38 -1.28 14 14 C -0.14 -1.98 9.97 -39.50 -0.39 -2.37 14 15 C 0.12 1.68 6.71 -38.98 -0.26 1.42 14 16 O -0.49 -5.57 12.94 -18.88 -0.24 -5.81 14 17 C -0.07 -1.11 6.32 -39.43 -0.25 -1.36 14 18 Cl -0.06 -0.84 28.49 -51.86 -1.48 -2.32 14 19 C -0.05 -0.87 9.36 -39.16 -0.37 -1.24 14 20 H 0.27 6.97 8.31 -40.82 -0.34 6.63 14 21 H 0.15 2.71 7.60 -52.49 -0.40 2.31 14 22 H 0.14 1.57 8.06 -52.49 -0.42 1.15 14 23 H 0.39 2.60 9.06 45.56 0.41 3.01 14 24 H 0.15 2.58 7.64 -52.48 -0.40 2.18 14 LS Contribution 248.88 15.07 3.75 3.75 Total: -1.00 -31.80 248.88 -4.83 -36.63 By element: Atomic # 1 Polarization: 2.13 SS G_CDS: -0.30 Total: 1.83 kcal Atomic # 6 Polarization: -3.67 SS G_CDS: -1.79 Total: -5.46 kcal Atomic # 7 Polarization: -23.94 SS G_CDS: 0.76 Total: -23.19 kcal Atomic # 8 Polarization: -26.01 SS G_CDS: -0.74 Total: -26.75 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.02 Total: 15.51 kcal Atomic # 17 Polarization: -0.84 SS G_CDS: -1.48 Total: -2.32 kcal Total LS contribution 3.75 Total: 3.75 kcal Total: -31.80 -4.83 -36.63 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000848950593.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.022 kcal (2) G-P(sol) polarization free energy of solvation -31.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.628 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds