Wall clock time and date at job start Thu Apr 9 2020 12:15:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31632 * 1 3 3 Si 1.86800 * 119.99850 * 2 1 4 4 H 1.48503 * 109.47283 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47286 * 300.00456 * 3 2 1 6 6 H 1.48501 * 109.47070 * 60.00096 * 3 2 1 7 7 C 1.38799 * 120.00475 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00323 * 179.97438 * 7 2 1 9 9 S 1.76201 * 119.99512 * 359.97438 * 7 2 1 10 10 C 1.80999 * 99.99867 * 180.02562 * 9 7 2 11 11 C 1.50702 * 109.47464 * 180.02562 * 10 9 7 12 12 O 1.20832 * 119.99678 * 0.02562 * 11 10 9 13 13 O 1.34222 * 120.00104 * 180.02562 * 11 10 9 14 14 C 1.45210 * 116.99805 * 180.02562 * 13 11 10 15 15 C 1.50698 * 109.47171 * 180.02562 * 14 13 11 16 16 C 1.39870 * 125.89873 * 0.02562 * 15 14 13 17 17 C 1.35318 * 107.92236 * 179.76106 * 16 15 14 18 18 N 1.34948 * 107.74290 * 0.42279 * 17 16 15 19 19 H 0.97001 * 126.03958 * 179.84649 * 18 17 16 20 20 N 1.30835 * 125.89830 * 180.02562 * 15 14 13 21 21 H 0.96997 * 119.99881 * 0.02562 * 1 2 3 22 22 H 1.09007 * 109.46879 * 60.00513 * 10 9 7 23 23 H 1.08998 * 109.47367 * 300.00489 * 10 9 7 24 24 H 1.09001 * 109.46753 * 59.99687 * 14 13 11 25 25 H 1.09005 * 109.46845 * 300.00135 * 14 13 11 26 26 H 1.08008 * 126.03860 * 0.02562 * 16 15 14 27 27 H 1.07999 * 126.12849 * 180.26834 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.7103 1.3465 0.0006 5 1 1.8915 2.3965 -1.2124 6 1 1.8915 2.3964 1.2125 7 6 2.0104 -1.2020 -0.0005 8 1 3.0904 -1.2019 -0.0010 9 16 1.1294 -2.7279 -0.0005 10 6 2.5160 -3.8913 -0.0005 11 6 1.9876 -5.3027 -0.0012 12 8 0.7958 -5.5016 -0.0021 13 8 2.8409 -6.3388 -0.0008 14 6 2.2612 -7.6701 -0.0020 15 6 3.3634 -8.6979 -0.0007 16 6 4.7359 -8.4285 0.0019 17 6 5.3925 -9.6118 0.0077 18 7 4.4682 -10.5950 -0.0007 19 1 4.6488 -11.5480 -0.0013 20 7 3.2017 -9.9962 -0.0018 21 1 -0.4850 0.8400 -0.0004 22 1 3.1245 -3.7313 0.8896 23 1 3.1246 -3.7312 -0.8904 24 1 1.6460 -7.7977 -0.8927 25 1 1.6441 -7.7985 0.8873 26 1 5.1913 -7.4491 0.0037 27 1 6.4641 -9.7453 0.0150 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000849681196.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:15:29 Heat of formation + Delta-G solvation = -10.626449 kcal Electronic energy + Delta-G solvation = -14071.255729 eV Core-core repulsion = 11343.515783 eV Total energy + Delta-G solvation = -2727.739947 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 242.051 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.37579 -39.94629 -36.22671 -32.55460 -32.47683 -30.17158 -29.82728 -27.10391 -25.52567 -21.86865 -20.98775 -19.99505 -18.39327 -17.90297 -17.02407 -16.43987 -15.67759 -14.91390 -14.83988 -14.21679 -14.07497 -13.65269 -13.60575 -12.98377 -12.67138 -12.12544 -12.01745 -11.09025 -11.07135 -10.92498 -10.80904 -10.75132 -10.03999 -9.88742 -9.56072 -9.11578 -8.92771 -8.34360 -6.59291 -6.26651 -3.99118 1.62983 2.30968 2.55064 2.66508 2.84968 3.20497 3.25304 3.30417 3.52738 4.15254 4.40916 4.66027 5.07268 5.09308 5.19248 5.30073 5.33259 5.56815 5.59063 5.79496 5.89779 6.09449 6.37085 6.65969 7.02177 7.39287 7.56610 8.15843 8.31444 9.19025 10.80896 Molecular weight = 242.05amu Principal moments of inertia in cm(-1) A = 0.064445 B = 0.004031 C = 0.003804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 434.371464 B = 6944.124204 C = 7358.047342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.074 3.926 3 Si 0.922 3.078 4 H -0.271 1.271 5 H -0.279 1.279 6 H -0.279 1.279 7 C -0.535 4.535 8 H 0.077 0.923 9 S -0.059 6.059 10 C -0.127 4.127 11 C 0.482 3.518 12 O -0.486 6.486 13 O -0.354 6.354 14 C 0.149 3.851 15 C 0.076 3.924 16 C -0.246 4.246 17 C 0.053 3.947 18 N -0.477 5.477 19 H 0.440 0.560 20 N -0.287 5.287 21 H 0.269 0.731 22 H 0.104 0.896 23 H 0.104 0.896 24 H 0.092 0.908 25 H 0.091 0.909 26 H 0.156 0.844 27 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.333 -16.745 0.015 20.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.136 4.136 3 Si 0.748 3.252 4 H -0.195 1.195 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.683 4.683 8 H 0.095 0.905 9 S 0.168 5.832 10 C -0.275 4.275 11 C 0.323 3.677 12 O -0.371 6.371 13 O -0.272 6.272 14 C 0.073 3.927 15 C -0.090 4.090 16 C -0.276 4.276 17 C -0.094 4.094 18 N -0.186 5.186 19 H 0.284 0.716 20 N -0.113 5.113 21 H 0.079 0.921 22 H 0.122 0.878 23 H 0.122 0.878 24 H 0.110 0.890 25 H 0.109 0.891 26 H 0.174 0.826 27 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges 8.852 -17.846 0.010 19.920 hybrid contribution 2.609 1.277 0.005 2.905 sum 11.461 -16.569 0.015 20.146 Atomic orbital electron populations 1.70021 1.05985 1.27525 1.46698 1.25012 0.95069 0.99137 0.94376 0.86066 0.79606 0.81607 0.77923 1.19499 1.20525 1.20532 1.22884 0.95069 0.91125 1.59216 0.90491 1.85445 1.04333 0.96586 1.96882 1.23294 1.07002 0.90584 1.06606 1.23310 0.85113 0.86848 0.72384 1.90686 1.16881 1.85532 1.44015 1.86433 1.41181 1.14581 1.84986 1.20682 0.90797 0.77126 1.04089 1.21853 0.95340 0.91790 1.00004 1.21472 0.92257 0.99342 1.14480 1.22655 0.96473 0.88597 1.01708 1.46298 1.03631 1.08979 1.59679 0.71641 1.77242 1.01211 1.07328 1.25515 0.92124 0.87772 0.87776 0.89046 0.89052 0.82613 0.80379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.68 13.22 55.49 0.73 -24.94 15 2 C 0.07 2.06 5.49 -17.43 -0.10 1.96 15 3 Si 0.92 21.04 29.55 -169.99 -5.02 16.02 15 4 H -0.27 -5.98 7.11 56.52 0.40 -5.58 15 5 H -0.28 -6.29 7.11 56.52 0.40 -5.88 15 6 H -0.28 -6.29 7.11 56.52 0.40 -5.89 15 7 C -0.53 -14.88 9.50 30.94 0.29 -14.58 15 8 H 0.08 2.02 7.80 -52.49 -0.41 1.61 15 9 S -0.06 -1.56 20.58 -107.50 -2.21 -3.77 15 10 C -0.13 -2.53 6.27 36.01 0.23 -2.31 15 11 C 0.48 9.10 7.98 36.01 0.29 9.39 15 12 O -0.49 -10.55 15.61 -18.75 -0.29 -10.84 15 13 O -0.35 -5.57 9.56 -39.24 -0.37 -5.95 15 14 C 0.15 2.08 6.09 36.00 0.22 2.30 15 15 C 0.08 1.00 7.19 -82.41 -0.59 0.41 15 16 C -0.25 -2.75 10.14 -40.01 -0.41 -3.15 15 17 C 0.05 0.42 11.99 -17.22 -0.21 0.22 15 18 N -0.48 -4.15 7.36 30.45 0.22 -3.92 15 19 H 0.44 2.18 8.96 -182.60 -1.64 0.54 15 20 N -0.29 -3.63 12.70 33.67 0.43 -3.20 15 21 H 0.27 7.38 8.31 -40.82 -0.34 7.04 15 22 H 0.10 1.91 8.14 -51.91 -0.42 1.49 15 23 H 0.10 1.91 8.14 -51.92 -0.42 1.49 15 24 H 0.09 1.25 8.13 -51.93 -0.42 0.82 15 25 H 0.09 1.25 8.13 -51.93 -0.42 0.82 15 26 H 0.16 1.65 7.90 -52.48 -0.41 1.24 15 27 H 0.18 0.68 8.06 -52.49 -0.42 0.26 15 LS Contribution 268.13 15.07 4.04 4.04 Total: -1.00 -33.90 268.13 -6.46 -40.36 By element: Atomic # 1 Polarization: 1.67 SS G_CDS: -3.71 Total: -2.03 kcal Atomic # 6 Polarization: -5.49 SS G_CDS: -0.27 Total: -5.77 kcal Atomic # 7 Polarization: -33.45 SS G_CDS: 1.39 Total: -32.06 kcal Atomic # 8 Polarization: -16.12 SS G_CDS: -0.67 Total: -16.79 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Atomic # 16 Polarization: -1.56 SS G_CDS: -2.21 Total: -3.77 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -33.90 -6.46 -40.36 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000849681196.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.736 kcal (2) G-P(sol) polarization free energy of solvation -33.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.362 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds