Wall clock time and date at job start Thu Apr 9 2020 12:15:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31632 * 1 3 3 Si 1.86800 * 119.99850 * 2 1 4 4 H 1.48503 * 109.47283 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47286 * 300.00456 * 3 2 1 6 6 H 1.48501 * 109.47070 * 60.00096 * 3 2 1 7 7 C 1.38799 * 120.00475 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00323 * 179.97438 * 7 2 1 9 9 S 1.76201 * 119.99512 * 359.97438 * 7 2 1 10 10 C 1.80999 * 99.99867 * 180.02562 * 9 7 2 11 11 C 1.50702 * 109.47464 * 180.02562 * 10 9 7 12 12 O 1.20832 * 119.99678 * 0.02562 * 11 10 9 13 13 O 1.34222 * 120.00104 * 180.02562 * 11 10 9 14 14 C 1.45210 * 116.99805 * 180.02562 * 13 11 10 15 15 C 1.50698 * 109.47171 * 180.02562 * 14 13 11 16 16 C 1.39870 * 125.89873 * 0.02562 * 15 14 13 17 17 C 1.35318 * 107.92236 * 179.76106 * 16 15 14 18 18 N 1.34948 * 107.74290 * 0.42279 * 17 16 15 19 19 H 0.97001 * 126.03958 * 179.84649 * 18 17 16 20 20 N 1.30835 * 125.89830 * 180.02562 * 15 14 13 21 21 H 0.96997 * 119.99881 * 0.02562 * 1 2 3 22 22 H 1.09007 * 109.46879 * 60.00513 * 10 9 7 23 23 H 1.08998 * 109.47367 * 300.00489 * 10 9 7 24 24 H 1.09001 * 109.46753 * 59.99687 * 14 13 11 25 25 H 1.09005 * 109.46845 * 300.00135 * 14 13 11 26 26 H 1.08008 * 126.03860 * 0.02562 * 16 15 14 27 27 H 1.07999 * 126.12849 * 180.26834 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.7103 1.3465 0.0006 5 1 1.8915 2.3965 -1.2124 6 1 1.8915 2.3964 1.2125 7 6 2.0104 -1.2020 -0.0005 8 1 3.0904 -1.2019 -0.0010 9 16 1.1294 -2.7279 -0.0005 10 6 2.5160 -3.8913 -0.0005 11 6 1.9876 -5.3027 -0.0012 12 8 0.7958 -5.5016 -0.0021 13 8 2.8409 -6.3388 -0.0008 14 6 2.2612 -7.6701 -0.0020 15 6 3.3634 -8.6979 -0.0007 16 6 4.7359 -8.4285 0.0019 17 6 5.3925 -9.6118 0.0077 18 7 4.4682 -10.5950 -0.0007 19 1 4.6488 -11.5480 -0.0013 20 7 3.2017 -9.9962 -0.0018 21 1 -0.4850 0.8400 -0.0004 22 1 3.1245 -3.7313 0.8896 23 1 3.1246 -3.7312 -0.8904 24 1 1.6460 -7.7977 -0.8927 25 1 1.6441 -7.7985 0.8873 26 1 5.1913 -7.4491 0.0037 27 1 6.4641 -9.7453 0.0150 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000849681196.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:15:28 Heat of formation + Delta-G solvation = -33.976016 kcal Electronic energy + Delta-G solvation = -14072.268243 eV Core-core repulsion = 11343.515783 eV Total energy + Delta-G solvation = -2728.752460 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 242.051 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -42.20958 -41.38304 -37.67104 -34.58388 -33.50201 -31.39935 -30.91126 -28.27019 -27.61642 -22.85745 -22.20746 -20.97351 -19.85903 -19.15673 -18.52316 -17.80296 -17.12210 -16.86588 -15.97355 -15.92088 -15.16491 -14.84590 -14.52694 -14.48289 -14.12349 -13.64649 -13.19716 -13.04953 -12.89962 -12.62234 -12.07251 -11.79228 -11.74244 -11.62157 -11.15114 -10.43815 -10.33794 -9.70563 -8.70613 -8.35038 -6.14326 0.85793 0.93847 1.13365 1.41527 1.44468 1.57258 1.71352 1.71962 2.16278 2.26214 3.00242 3.27029 3.50133 3.82845 3.98348 4.15744 4.25060 4.32861 4.46183 4.49907 4.83409 5.05723 5.24810 5.44608 5.54596 6.21334 6.41663 6.60582 6.68792 7.07029 8.74434 Molecular weight = 242.05amu Principal moments of inertia in cm(-1) A = 0.064445 B = 0.004031 C = 0.003804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 434.371464 B = 6944.124204 C = 7358.047342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.014 3.986 3 Si 1.001 2.999 4 H -0.255 1.255 5 H -0.275 1.275 6 H -0.275 1.275 7 C -0.545 4.545 8 H 0.088 0.912 9 S -0.141 6.141 10 C -0.105 4.105 11 C 0.492 3.508 12 O -0.519 6.519 13 O -0.339 6.339 14 C 0.149 3.851 15 C 0.056 3.944 16 C -0.279 4.279 17 C 0.082 3.918 18 N -0.463 5.463 19 H 0.456 0.544 20 N -0.320 5.320 21 H 0.272 0.728 22 H 0.126 0.874 23 H 0.126 0.874 24 H 0.090 0.910 25 H 0.090 0.910 26 H 0.157 0.843 27 H 0.228 0.772 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.254 -17.303 0.020 22.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.191 4.191 3 Si 0.822 3.178 4 H -0.179 1.179 5 H -0.200 1.200 6 H -0.200 1.200 7 C -0.692 4.692 8 H 0.106 0.894 9 S 0.086 5.914 10 C -0.254 4.254 11 C 0.335 3.665 12 O -0.407 6.407 13 O -0.255 6.255 14 C 0.073 3.927 15 C -0.109 4.109 16 C -0.308 4.308 17 C -0.066 4.066 18 N -0.174 5.174 19 H 0.304 0.696 20 N -0.148 5.148 21 H 0.081 0.919 22 H 0.144 0.856 23 H 0.144 0.856 24 H 0.108 0.892 25 H 0.108 0.892 26 H 0.175 0.825 27 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges 11.789 -18.448 0.015 21.893 hybrid contribution 1.792 1.240 0.004 2.179 sum 13.581 -17.207 0.018 21.921 Atomic orbital electron populations 1.70176 1.07957 1.28684 1.47920 1.26133 0.95985 1.03337 0.93649 0.84874 0.78680 0.76196 0.78010 1.17897 1.20001 1.20013 1.23232 0.95576 0.91446 1.58979 0.89392 1.85582 1.09396 0.99207 1.97174 1.23080 1.04194 0.89440 1.08648 1.23021 0.84660 0.87201 0.71647 1.90683 1.18333 1.86004 1.45723 1.86394 1.40068 1.14890 1.84186 1.20750 0.91605 0.76287 1.04045 1.21725 0.95860 0.91799 1.01547 1.21675 0.91641 1.00805 1.16639 1.23319 0.98217 0.87031 0.98019 1.46361 1.02667 1.10153 1.58194 0.69611 1.77160 1.03546 1.07230 1.26819 0.91907 0.85628 0.85635 0.89208 0.89212 0.82500 0.75539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -54.82 13.22 21.65 0.29 -54.53 15 2 C 0.01 0.77 5.49 84.86 0.47 1.24 15 3 Si 1.00 42.69 29.55 68.60 2.03 44.72 15 4 H -0.26 -10.15 7.11 99.48 0.71 -9.45 15 5 H -0.27 -11.40 7.11 99.48 0.71 -10.70 15 6 H -0.27 -11.41 7.11 99.48 0.71 -10.70 15 7 C -0.54 -30.21 9.50 67.95 0.65 -29.57 15 8 H 0.09 4.51 7.80 -2.91 -0.02 4.49 15 9 S -0.14 -7.56 20.58 -56.49 -1.16 -8.72 15 10 C -0.11 -4.11 6.27 71.24 0.45 -3.66 15 11 C 0.49 18.46 7.98 71.24 0.57 19.02 15 12 O -0.52 -23.00 15.61 21.95 0.34 -22.66 15 13 O -0.34 -10.42 9.56 -51.34 -0.49 -10.92 15 14 C 0.15 4.17 6.09 71.24 0.43 4.60 15 15 C 0.06 1.41 7.19 43.10 0.31 1.72 15 16 C -0.28 -5.66 10.14 21.99 0.22 -5.43 15 17 C 0.08 1.03 11.99 83.54 1.00 2.04 15 18 N -0.46 -6.80 7.36 -57.59 -0.42 -7.22 15 19 H 0.46 3.14 8.96 -213.33 -1.91 1.23 15 20 N -0.32 -7.74 12.70 -47.39 -0.60 -8.35 15 21 H 0.27 15.15 8.31 -92.71 -0.77 14.38 15 22 H 0.13 4.39 8.14 -2.39 -0.02 4.37 15 23 H 0.13 4.39 8.14 -2.40 -0.02 4.37 15 24 H 0.09 2.51 8.13 -2.39 -0.02 2.49 15 25 H 0.09 2.51 8.13 -2.38 -0.02 2.49 15 26 H 0.16 3.04 7.90 -2.91 -0.02 3.02 15 27 H 0.23 0.49 8.06 -2.91 -0.02 0.46 15 Total: -1.00 -74.62 268.13 3.36 -71.25 By element: Atomic # 1 Polarization: 7.17 SS G_CDS: -0.71 Total: 6.46 kcal Atomic # 6 Polarization: -14.13 SS G_CDS: 4.09 Total: -10.04 kcal Atomic # 7 Polarization: -69.36 SS G_CDS: -0.74 Total: -70.10 kcal Atomic # 8 Polarization: -33.42 SS G_CDS: -0.15 Total: -33.57 kcal Atomic # 14 Polarization: 42.69 SS G_CDS: 2.03 Total: 44.72 kcal Atomic # 16 Polarization: -7.56 SS G_CDS: -1.16 Total: -8.72 kcal Total: -74.62 3.36 -71.25 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000849681196.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.278 kcal (2) G-P(sol) polarization free energy of solvation -74.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.254 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds