Wall clock time and date at job start Thu Apr 9 2020 12:15:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35968 * 116.99624 * 2 1 4 4 C 1.37569 * 120.82112 * 180.02562 * 3 2 1 5 5 C 1.38035 * 114.24917 * 180.02562 * 4 3 2 6 6 C 1.47116 * 127.76124 * 180.02562 * 5 4 3 7 7 O 1.21629 * 120.00189 * 359.97438 * 6 5 4 8 8 N 1.34783 * 120.00047 * 179.97438 * 6 5 4 9 9 C 1.46496 * 119.99728 * 179.97438 * 8 6 5 10 10 C 1.50707 * 109.46701 * 179.97438 * 9 8 6 11 11 H 1.07996 * 120.00317 * 0.02562 * 10 9 8 12 12 C 1.37874 * 119.99876 * 180.02562 * 10 9 8 13 13 N 1.31521 * 119.99939 * 359.97438 * 12 10 9 14 14 Si 1.86795 * 120.00172 * 180.02562 * 12 10 9 15 15 H 1.48500 * 109.47499 * 59.99675 * 14 12 10 16 16 H 1.48504 * 109.47565 * 180.02562 * 14 12 10 17 17 H 1.48502 * 109.47170 * 299.99922 * 14 12 10 18 18 S 1.77239 * 104.48148 * 359.97438 * 5 4 3 19 19 N 1.30357 * 120.82839 * 0.02562 * 3 2 1 20 20 H 1.08997 * 109.47023 * 60.00447 * 1 2 3 21 21 H 1.09004 * 109.46710 * 180.02562 * 1 2 3 22 22 H 1.08997 * 109.47156 * 300.00498 * 1 2 3 23 23 H 1.08004 * 122.87524 * 0.03450 * 4 3 2 24 24 H 0.96995 * 119.99507 * 0.02562 * 8 6 5 25 25 H 1.08997 * 109.47563 * 300.00156 * 9 8 6 26 26 H 1.08996 * 109.47127 * 60.00517 * 9 8 6 27 27 H 0.97002 * 119.99577 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0463 1.2115 0.0000 4 6 3.4189 1.3033 -0.0005 5 6 3.9006 2.5969 0.0001 6 6 5.3049 3.0353 -0.0007 7 8 6.1993 2.2110 -0.0017 8 7 5.6004 4.3503 -0.0004 9 6 6.9988 4.7868 -0.0007 10 6 7.0549 6.2928 -0.0009 11 1 6.1404 6.8673 -0.0005 12 6 8.2738 6.9372 -0.0017 13 7 9.3875 6.2376 -0.0018 14 14 8.3434 8.8039 -0.0013 15 1 7.6632 9.3244 1.2118 16 1 9.7610 9.2464 -0.0029 17 1 7.6613 9.3249 -1.2131 18 16 2.4471 3.6111 0.0006 19 7 1.3521 2.3149 0.0005 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5139 0.8899 23 1 4.0643 0.4373 -0.0015 24 1 4.8871 5.0076 0.0007 25 1 7.4990 4.4043 0.8890 26 1 7.4984 4.4049 -0.8910 27 1 10.2450 6.6911 -0.0027 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000857195355.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:15:38 Heat of formation + Delta-G solvation = -55.169698 kcal Electronic energy + Delta-G solvation = -14332.925280 eV Core-core repulsion = 11603.253793 eV Total energy + Delta-G solvation = -2729.671487 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 242.051 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -41.33714 -40.53616 -37.54081 -36.27663 -34.45667 -32.53013 -29.77064 -28.79266 -26.22774 -24.41319 -22.56068 -21.23264 -19.93140 -18.91831 -18.31111 -17.31252 -17.30825 -16.97148 -16.33510 -16.29493 -15.70972 -14.87687 -14.56547 -14.45990 -14.06090 -13.94615 -13.09055 -12.90224 -12.67634 -12.54427 -12.22821 -12.12696 -11.99057 -11.52467 -11.28508 -10.92655 -10.80278 -10.00493 -9.49419 -8.28321 -6.44847 -1.03615 0.00684 0.40511 1.06935 1.46331 1.49856 1.57770 1.79944 1.93196 2.32792 2.48802 3.07151 3.47478 3.82542 4.10566 4.31733 4.37424 4.55730 4.73016 4.95406 5.06901 5.21281 5.31569 5.57821 5.81023 5.94021 6.56438 6.66665 7.07350 7.29107 8.83216 Molecular weight = 242.05amu Principal moments of inertia in cm(-1) A = 0.056849 B = 0.004714 C = 0.004367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 492.415126 B = 5938.578783 C = 6410.549028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.302 6.302 3 C 0.306 3.694 4 C -0.131 4.131 5 C -0.187 4.187 6 C 0.578 3.422 7 O -0.569 6.569 8 N -0.691 5.691 9 C 0.264 3.736 10 C -0.560 4.560 11 H 0.085 0.915 12 C 0.007 3.993 13 N -0.927 5.927 14 Si 0.983 3.017 15 H -0.262 1.262 16 H -0.286 1.286 17 H -0.262 1.262 18 S 0.329 5.671 19 N -0.519 5.519 20 H 0.061 0.939 21 H 0.132 0.868 22 H 0.061 0.939 23 H 0.182 0.818 24 H 0.407 0.593 25 H 0.001 0.999 26 H 0.001 0.999 27 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.203 -6.357 0.008 19.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.208 6.208 3 C 0.092 3.908 4 C -0.169 4.169 5 C -0.319 4.319 6 C 0.362 3.638 7 O -0.450 6.450 8 N -0.340 5.340 9 C 0.143 3.857 10 C -0.597 4.597 11 H 0.103 0.897 12 C -0.193 4.193 13 N -0.565 5.565 14 Si 0.806 3.194 15 H -0.187 1.187 16 H -0.212 1.212 17 H -0.187 1.187 18 S 0.479 5.521 19 N -0.362 5.362 20 H 0.080 0.920 21 H 0.150 0.850 22 H 0.080 0.920 23 H 0.199 0.801 24 H 0.243 0.757 25 H 0.019 0.981 26 H 0.019 0.981 27 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -18.727 -5.562 0.008 19.535 hybrid contribution 1.063 -0.480 -0.001 1.166 sum -17.664 -6.042 0.007 18.669 Atomic orbital electron populations 1.23274 0.74908 1.05675 1.02626 1.86323 1.24787 1.21714 1.87959 1.19805 0.89494 0.85756 0.95703 1.20870 0.92871 0.98466 1.04677 1.25824 0.98706 0.98861 1.08462 1.17124 0.86028 0.83207 0.77427 1.90790 1.48422 1.53627 1.52163 1.46118 1.11068 1.05503 1.71304 1.18756 0.76654 0.95035 0.95297 1.21547 0.94124 0.90617 1.53433 0.89695 1.26006 0.94741 1.04758 0.93780 1.70116 0.98474 1.38354 1.49574 0.85227 0.77224 0.77419 0.79498 1.18696 1.21153 1.18705 1.84845 0.88116 1.10828 1.68328 1.76368 1.27046 1.01419 1.31374 0.92026 0.84968 0.92032 0.80103 0.75675 0.98135 0.98139 0.92166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 10.43 113.37 1.18 1.61 15 2 O -0.30 -6.68 10.52 -93.19 -0.98 -7.66 15 3 C 0.31 7.81 7.36 84.75 0.62 8.44 15 4 C -0.13 -3.67 10.09 22.06 0.22 -3.44 15 5 C -0.19 -5.82 6.74 24.55 0.17 -5.66 15 6 C 0.58 23.38 7.80 86.57 0.68 24.06 15 7 O -0.57 -27.57 16.95 -4.12 -0.07 -27.64 15 8 N -0.69 -28.81 5.54 -470.41 -2.61 -31.41 15 9 C 0.26 13.97 5.43 85.64 0.46 14.43 15 10 C -0.56 -29.42 9.28 25.60 0.24 -29.18 15 11 H 0.09 4.02 7.60 -2.91 -0.02 3.99 15 12 C 0.01 0.40 5.46 84.65 0.46 0.86 15 13 N -0.93 -54.25 13.29 21.45 0.28 -53.96 15 14 Si 0.98 41.17 29.54 68.60 2.03 43.19 15 15 H -0.26 -10.42 7.11 99.48 0.71 -9.72 15 16 H -0.29 -11.94 7.11 99.48 0.71 -11.23 15 17 H -0.26 -10.43 7.11 99.48 0.71 -9.72 15 18 S 0.33 8.23 23.27 -56.49 -1.31 6.91 15 19 N -0.52 -13.20 11.03 -175.21 -1.93 -15.13 15 20 H 0.06 0.90 8.13 -2.39 -0.02 0.88 15 21 H 0.13 1.08 8.14 -2.39 -0.02 1.06 15 22 H 0.06 0.89 8.12 -2.39 -0.02 0.88 15 23 H 0.18 4.82 8.06 -2.91 -0.02 4.80 15 24 H 0.41 14.23 7.68 -92.71 -0.71 13.52 15 25 H 0.00 0.04 8.14 -2.39 -0.02 0.02 15 26 H 0.00 0.04 8.14 -2.39 -0.02 0.02 15 27 H 0.27 14.79 8.31 -92.71 -0.77 14.02 15 Total: -1.00 -65.99 266.36 -0.06 -66.06 By element: Atomic # 1 Polarization: 8.02 SS G_CDS: 0.50 Total: 8.51 kcal Atomic # 6 Polarization: 7.09 SS G_CDS: 4.03 Total: 11.12 kcal Atomic # 7 Polarization: -96.25 SS G_CDS: -4.26 Total: -100.51 kcal Atomic # 8 Polarization: -34.24 SS G_CDS: -1.05 Total: -35.29 kcal Atomic # 14 Polarization: 41.17 SS G_CDS: 2.03 Total: 43.19 kcal Atomic # 16 Polarization: 8.23 SS G_CDS: -1.31 Total: 6.91 kcal Total: -65.99 -0.06 -66.06 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000857195355.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.886 kcal (2) G-P(sol) polarization free energy of solvation -65.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.056 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds