Wall clock time and date at job start Thu Apr 9 2020 12:15:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.32211 * 119.81568 * 2 1 4 4 O 1.21253 * 122.89977 * 0.02562 * 3 2 1 5 5 C 1.51126 * 114.20075 * 180.02562 * 3 2 1 6 6 S 1.82384 * 103.49125 * 359.97438 * 5 3 2 7 7 C 1.36728 * 119.81471 * 179.97438 * 2 1 3 8 8 C 1.36564 * 126.26634 * 359.95625 * 7 2 1 9 9 C 1.40300 * 120.00605 * 179.97438 * 8 7 2 10 10 O 1.21941 * 119.99250 * 0.02562 * 9 8 7 11 11 N 1.34771 * 120.00606 * 179.97438 * 9 8 7 12 12 C 1.36973 * 120.00243 * 179.97438 * 11 9 8 13 13 H 1.08002 * 119.99561 * 0.02562 * 12 11 9 14 14 C 1.38914 * 120.00137 * 179.97438 * 12 11 9 15 15 N 1.31465 * 119.99932 * 0.02562 * 14 12 11 16 16 Si 1.86802 * 119.99991 * 180.02562 * 14 12 11 17 17 H 1.48499 * 109.47292 * 0.02562 * 16 14 12 18 18 H 1.48501 * 109.46833 * 120.00172 * 16 14 12 19 19 H 1.48499 * 109.47098 * 240.00152 * 16 14 12 20 20 H 1.09000 * 109.46942 * 0.02562 * 1 2 3 21 21 H 1.08997 * 109.47149 * 120.02189 * 1 2 3 22 22 H 1.08997 * 109.46712 * 240.02875 * 1 2 3 23 23 H 1.08991 * 110.61598 * 118.50286 * 5 3 2 24 24 H 1.08998 * 110.61561 * 241.49795 * 5 3 2 25 25 H 1.08002 * 120.00197 * 359.97438 * 8 7 2 26 26 H 0.97001 * 119.99974 * 0.02562 * 11 9 8 27 27 H 0.96998 * 120.00059 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1224 1.1471 0.0000 4 8 1.5666 2.2247 0.0005 5 6 3.6264 0.9992 -0.0006 6 16 3.8763 -0.8074 -0.0003 7 6 2.1448 -1.1863 0.0005 8 6 1.5912 -2.4347 0.0019 9 6 2.4173 -3.5686 0.0018 10 8 3.6299 -3.4394 0.0009 11 7 1.8709 -4.8006 0.0037 12 6 2.6775 -5.9076 0.0030 13 1 3.7514 -5.7932 0.0014 14 6 2.1143 -7.1775 0.0055 15 7 0.8070 -7.3167 0.0080 16 14 3.2144 -8.6872 0.0053 17 1 4.6374 -8.2628 0.0029 18 1 2.9422 -9.4981 1.2192 19 1 2.9380 -9.5009 -1.2058 20 1 -0.3633 1.0277 -0.0005 21 1 -0.3633 -0.5142 -0.8898 22 1 -0.3633 -0.5134 0.8902 23 1 4.0556 1.4464 -0.8972 24 1 4.0563 1.4460 0.8959 25 1 0.5172 -2.5491 0.0032 26 1 0.9063 -4.9034 0.0048 27 1 0.4137 -8.2034 0.0101 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000874260802.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:15:45 Heat of formation + Delta-G solvation = -36.042337 kcal Electronic energy + Delta-G solvation = -14796.891315 eV Core-core repulsion = 12068.049253 eV Total energy + Delta-G solvation = -2728.842062 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 242.051 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.81823 -38.48099 -36.65848 -34.14546 -31.49066 -31.13973 -30.60884 -26.89973 -25.44026 -23.17850 -19.99830 -19.32359 -18.16229 -17.72055 -16.52938 -16.40296 -15.79606 -14.93954 -14.66170 -14.05494 -13.96223 -13.81610 -13.52404 -12.98610 -12.71100 -12.41495 -11.68194 -11.61321 -11.40219 -11.13812 -10.84689 -10.43782 -10.35770 -10.09412 -9.66981 -8.58561 -8.38313 -8.13560 -7.27204 -6.60994 -3.88871 1.22088 1.59586 2.12610 2.51507 2.82747 3.12993 3.19994 3.27545 4.03548 4.12555 4.29718 4.99800 5.05400 5.10402 5.24802 5.27973 5.36206 5.57822 5.62799 5.88762 6.27283 6.55226 7.01100 7.39085 7.62105 7.93861 8.46809 9.02292 9.38410 9.94646 10.55500 Molecular weight = 242.05amu Principal moments of inertia in cm(-1) A = 0.052347 B = 0.005571 C = 0.005054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 534.760507 B = 5024.548040 C = 5538.783745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.064 3.936 2 N -0.540 5.540 3 C 0.523 3.477 4 O -0.514 6.514 5 C -0.201 4.201 6 S 0.028 5.972 7 C 0.114 3.886 8 C -0.186 4.186 9 C 0.461 3.539 10 O -0.592 6.592 11 N -0.539 5.539 12 C -0.285 4.285 13 H 0.110 0.890 14 C 0.021 3.979 15 N -0.887 5.887 16 Si 0.934 3.066 17 H -0.265 1.265 18 H -0.280 1.280 19 H -0.280 1.280 20 H 0.093 0.907 21 H 0.076 0.924 22 H 0.076 0.924 23 H 0.134 0.866 24 H 0.134 0.866 25 H 0.130 0.870 26 H 0.394 0.606 27 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.804 10.563 -0.012 10.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 N -0.263 5.263 3 C 0.311 3.689 4 O -0.391 6.391 5 C -0.351 4.351 6 S 0.266 5.734 7 C -0.099 4.099 8 C -0.223 4.223 9 C 0.253 3.747 10 O -0.482 6.482 11 N -0.172 5.172 12 C -0.415 4.415 13 H 0.128 0.872 14 C -0.182 4.182 15 N -0.527 5.527 16 Si 0.760 3.240 17 H -0.189 1.189 18 H -0.205 1.205 19 H -0.205 1.205 20 H 0.112 0.888 21 H 0.095 0.905 22 H 0.095 0.905 23 H 0.152 0.848 24 H 0.152 0.848 25 H 0.148 0.852 26 H 0.228 0.772 27 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 0.685 10.482 -0.012 10.504 hybrid contribution -1.554 -0.262 0.002 1.576 sum -0.868 10.220 -0.010 10.257 Atomic orbital electron populations 1.22050 0.77552 1.04900 1.03496 1.44431 1.09089 1.05012 1.67748 1.19809 0.89613 0.83433 0.76079 1.90744 1.72492 1.26254 1.49562 1.24671 0.95874 1.05217 1.09320 1.87977 0.99917 0.94179 1.91315 1.21986 0.94644 0.87659 1.05582 1.20910 1.00126 0.90068 1.11213 1.15832 0.88294 0.83349 0.87240 1.90621 1.14189 1.84762 1.58667 1.41891 1.09637 1.04594 1.61070 1.19928 0.92819 0.83232 1.45564 0.87208 1.25403 0.96306 0.99613 0.96906 1.69642 1.09782 1.25022 1.48269 0.85720 0.80122 0.80236 0.77884 1.18906 1.20542 1.20537 0.88840 0.90491 0.90494 0.84798 0.84801 0.85199 0.77189 0.91480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.75 9.58 59.85 0.57 1.32 15 2 N -0.54 -7.99 2.95 -122.24 -0.36 -8.35 15 3 C 0.52 7.73 7.80 -11.91 -0.09 7.64 15 4 O -0.51 -8.54 16.68 5.58 0.09 -8.44 15 5 C -0.20 -2.52 7.36 36.21 0.27 -2.25 15 6 S 0.03 0.46 20.64 -107.50 -2.22 -1.76 15 7 C 0.11 1.95 7.00 -15.97 -0.11 1.84 15 8 C -0.19 -3.45 9.27 -39.41 -0.37 -3.81 15 9 C 0.46 10.77 7.47 -15.49 -0.12 10.65 15 10 O -0.59 -15.44 13.68 4.97 0.07 -15.37 15 11 N -0.54 -13.25 5.27 -13.92 -0.07 -13.32 15 12 C -0.28 -7.62 9.68 -15.00 -0.15 -7.76 15 13 H 0.11 3.07 7.15 -52.49 -0.38 2.70 15 14 C 0.02 0.54 5.50 -17.46 -0.10 0.45 15 15 N -0.89 -23.00 13.05 55.49 0.72 -22.28 15 16 Si 0.93 20.09 29.55 -169.99 -5.02 15.06 15 17 H -0.27 -5.71 7.11 56.52 0.40 -5.31 15 18 H -0.28 -5.93 7.11 56.52 0.40 -5.53 15 19 H -0.28 -5.92 7.11 56.52 0.40 -5.52 15 20 H 0.09 1.05 6.99 -51.93 -0.36 0.69 15 21 H 0.08 0.80 8.14 -51.93 -0.42 0.38 15 22 H 0.08 0.80 8.14 -51.93 -0.42 0.37 15 23 H 0.13 1.40 8.14 -51.93 -0.42 0.98 15 24 H 0.13 1.40 8.14 -51.93 -0.42 0.98 15 25 H 0.13 2.00 7.42 -52.49 -0.39 1.61 15 26 H 0.39 9.19 7.85 -40.82 -0.32 8.87 15 27 H 0.28 6.70 8.31 -40.82 -0.34 6.36 15 LS Contribution 257.08 15.07 3.87 3.87 Total: -1.00 -30.64 257.08 -5.28 -35.92 By element: Atomic # 1 Polarization: 8.86 SS G_CDS: -2.27 Total: 6.59 kcal Atomic # 6 Polarization: 8.16 SS G_CDS: -0.09 Total: 8.08 kcal Atomic # 7 Polarization: -44.24 SS G_CDS: 0.29 Total: -43.95 kcal Atomic # 8 Polarization: -23.98 SS G_CDS: 0.16 Total: -23.82 kcal Atomic # 14 Polarization: 20.09 SS G_CDS: -5.02 Total: 15.06 kcal Atomic # 16 Polarization: 0.46 SS G_CDS: -2.22 Total: -1.76 kcal Total LS contribution 3.87 Total: 3.87 kcal Total: -30.64 -5.28 -35.92 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000874260802.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.124 kcal (2) G-P(sol) polarization free energy of solvation -30.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.918 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds