Wall clock time and date at job start Thu Apr 9 2020 12:15:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.32211 * 119.81568 * 2 1 4 4 O 1.21253 * 122.89977 * 0.02562 * 3 2 1 5 5 C 1.51126 * 114.20075 * 180.02562 * 3 2 1 6 6 S 1.82384 * 103.49125 * 359.97438 * 5 3 2 7 7 C 1.36728 * 119.81471 * 179.97438 * 2 1 3 8 8 C 1.36564 * 126.26634 * 359.95625 * 7 2 1 9 9 C 1.40300 * 120.00605 * 179.97438 * 8 7 2 10 10 O 1.21941 * 119.99250 * 0.02562 * 9 8 7 11 11 N 1.34771 * 120.00606 * 179.97438 * 9 8 7 12 12 C 1.36973 * 120.00243 * 179.97438 * 11 9 8 13 13 H 1.08002 * 119.99561 * 0.02562 * 12 11 9 14 14 C 1.38914 * 120.00137 * 179.97438 * 12 11 9 15 15 N 1.31465 * 119.99932 * 0.02562 * 14 12 11 16 16 Si 1.86802 * 119.99991 * 180.02562 * 14 12 11 17 17 H 1.48499 * 109.47292 * 0.02562 * 16 14 12 18 18 H 1.48501 * 109.46833 * 120.00172 * 16 14 12 19 19 H 1.48499 * 109.47098 * 240.00152 * 16 14 12 20 20 H 1.09000 * 109.46942 * 0.02562 * 1 2 3 21 21 H 1.08997 * 109.47149 * 120.02189 * 1 2 3 22 22 H 1.08997 * 109.46712 * 240.02875 * 1 2 3 23 23 H 1.08991 * 110.61598 * 118.50286 * 5 3 2 24 24 H 1.08998 * 110.61561 * 241.49795 * 5 3 2 25 25 H 1.08002 * 120.00197 * 359.97438 * 8 7 2 26 26 H 0.97001 * 119.99974 * 0.02562 * 11 9 8 27 27 H 0.96998 * 120.00059 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1224 1.1471 0.0000 4 8 1.5666 2.2247 0.0005 5 6 3.6264 0.9992 -0.0006 6 16 3.8763 -0.8074 -0.0003 7 6 2.1448 -1.1863 0.0005 8 6 1.5912 -2.4347 0.0019 9 6 2.4173 -3.5686 0.0018 10 8 3.6299 -3.4394 0.0009 11 7 1.8709 -4.8006 0.0037 12 6 2.6775 -5.9076 0.0030 13 1 3.7514 -5.7932 0.0014 14 6 2.1143 -7.1775 0.0055 15 7 0.8070 -7.3167 0.0080 16 14 3.2144 -8.6872 0.0053 17 1 4.6374 -8.2628 0.0029 18 1 2.9422 -9.4981 1.2192 19 1 2.9380 -9.5009 -1.2058 20 1 -0.3633 1.0277 -0.0005 21 1 -0.3633 -0.5142 -0.8898 22 1 -0.3633 -0.5134 0.8902 23 1 4.0556 1.4464 -0.8972 24 1 4.0563 1.4460 0.8959 25 1 0.5172 -2.5491 0.0032 26 1 0.9063 -4.9034 0.0048 27 1 0.4137 -8.2034 0.0101 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000874260802.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:15:44 Heat of formation + Delta-G solvation = -57.658091 kcal Electronic energy + Delta-G solvation = -14797.828645 eV Core-core repulsion = 12068.049253 eV Total energy + Delta-G solvation = -2729.779392 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 242.051 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -42.06507 -40.26461 -37.99282 -36.01763 -33.34166 -32.49748 -31.87616 -28.10180 -27.10121 -24.71228 -21.43385 -20.79645 -19.98620 -19.10301 -17.76990 -17.71389 -17.39541 -16.61184 -16.24581 -15.46827 -15.41673 -15.30335 -14.85695 -14.66986 -13.84401 -13.53386 -13.32287 -13.01990 -12.97169 -12.53037 -12.40010 -12.15560 -12.04688 -11.50950 -11.42868 -10.19429 -10.03208 -9.91072 -8.69785 -8.49438 -5.88835 -0.18671 0.26835 0.90168 1.24645 1.44582 1.45569 1.56076 1.61299 2.32296 2.51963 2.86984 3.34261 3.52424 4.06038 4.14046 4.22826 4.40730 4.41363 4.55661 4.72144 4.74834 5.08802 5.42170 5.72972 6.01691 6.41065 6.59172 7.11220 7.54048 8.10975 8.67952 Molecular weight = 242.05amu Principal moments of inertia in cm(-1) A = 0.052347 B = 0.005571 C = 0.005054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 534.760507 B = 5024.548040 C = 5538.783745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.055 3.945 2 N -0.542 5.542 3 C 0.523 3.477 4 O -0.526 6.526 5 C -0.177 4.177 6 S -0.022 6.022 7 C 0.152 3.848 8 C -0.217 4.217 9 C 0.469 3.531 10 O -0.624 6.624 11 N -0.556 5.556 12 C -0.322 4.322 13 H 0.085 0.915 14 C -0.013 4.013 15 N -0.914 5.914 16 Si 0.994 3.006 17 H -0.271 1.271 18 H -0.271 1.271 19 H -0.271 1.271 20 H 0.099 0.901 21 H 0.091 0.909 22 H 0.091 0.909 23 H 0.164 0.836 24 H 0.163 0.837 25 H 0.161 0.839 26 H 0.398 0.602 27 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.033 12.238 -0.013 12.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 N -0.264 5.264 3 C 0.312 3.688 4 O -0.403 6.403 5 C -0.327 4.327 6 S 0.218 5.782 7 C -0.062 4.062 8 C -0.254 4.254 9 C 0.262 3.738 10 O -0.516 6.516 11 N -0.190 5.190 12 C -0.452 4.452 13 H 0.103 0.897 14 C -0.214 4.214 15 N -0.554 5.554 16 Si 0.818 3.182 17 H -0.196 1.196 18 H -0.196 1.196 19 H -0.196 1.196 20 H 0.118 0.882 21 H 0.110 0.890 22 H 0.110 0.890 23 H 0.181 0.819 24 H 0.181 0.819 25 H 0.179 0.821 26 H 0.232 0.768 27 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 0.440 12.188 -0.013 12.196 hybrid contribution -1.420 -0.347 0.002 1.462 sum -0.980 11.841 -0.011 11.881 Atomic orbital electron populations 1.22334 0.75550 1.05807 1.05063 1.44628 1.10497 1.04177 1.67102 1.20121 0.90384 0.83025 0.75267 1.90762 1.72943 1.26586 1.50017 1.24804 0.94594 1.01065 1.12209 1.88221 1.00605 0.98800 1.90597 1.22052 0.94837 0.88163 1.01108 1.20654 1.01114 0.88734 1.14894 1.16483 0.88324 0.84170 0.84845 1.90608 1.15963 1.85839 1.59173 1.41831 1.09521 1.04574 1.63091 1.19793 0.92079 0.84789 1.48573 0.89703 1.26094 0.97602 1.01498 0.96176 1.69695 1.10673 1.25717 1.49341 0.84841 0.78009 0.77051 0.78301 1.19569 1.19637 1.19624 0.88225 0.89013 0.89017 0.81887 0.81892 0.82144 0.76812 0.91109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.11 9.58 127.77 1.22 2.34 15 2 N -0.54 -14.41 2.95 -660.46 -1.95 -16.36 15 3 C 0.52 13.62 7.80 88.19 0.69 14.31 15 4 O -0.53 -15.60 16.68 -2.95 -0.05 -15.65 15 5 C -0.18 -3.76 7.36 71.37 0.53 -3.23 15 6 S -0.02 -0.72 20.64 -56.49 -1.17 -1.89 15 7 C 0.15 4.95 7.00 83.54 0.59 5.53 15 8 C -0.22 -7.82 9.27 22.38 0.21 -7.61 15 9 C 0.47 22.25 7.47 84.74 0.63 22.88 15 10 O -0.62 -33.29 13.68 -5.13 -0.07 -33.36 15 11 N -0.56 -28.11 5.27 -316.08 -1.67 -29.78 15 12 C -0.32 -17.86 9.68 84.05 0.81 -17.05 15 13 H 0.09 5.00 7.15 -2.91 -0.02 4.98 15 14 C -0.01 -0.68 5.50 84.91 0.47 -0.22 15 15 N -0.91 -48.05 13.05 21.66 0.28 -47.77 15 16 Si 0.99 41.83 29.55 68.60 2.03 43.86 15 17 H -0.27 -11.52 7.11 99.48 0.71 -10.81 15 18 H -0.27 -10.94 7.11 99.48 0.71 -10.23 15 19 H -0.27 -10.93 7.11 99.48 0.71 -10.22 15 20 H 0.10 1.93 6.99 -2.39 -0.02 1.91 15 21 H 0.09 1.61 8.14 -2.39 -0.02 1.59 15 22 H 0.09 1.61 8.14 -2.39 -0.02 1.59 15 23 H 0.16 2.67 8.14 -2.39 -0.02 2.65 15 24 H 0.16 2.67 8.14 -2.39 -0.02 2.65 15 25 H 0.16 4.66 7.42 -2.91 -0.02 4.64 15 26 H 0.40 19.04 7.85 -92.71 -0.73 18.31 15 27 H 0.28 13.69 8.31 -92.71 -0.77 12.92 15 Total: -1.00 -67.05 257.08 3.04 -64.01 By element: Atomic # 1 Polarization: 19.49 SS G_CDS: 0.49 Total: 19.98 kcal Atomic # 6 Polarization: 11.81 SS G_CDS: 5.14 Total: 16.95 kcal Atomic # 7 Polarization: -90.58 SS G_CDS: -3.33 Total: -93.91 kcal Atomic # 8 Polarization: -48.89 SS G_CDS: -0.12 Total: -49.01 kcal Atomic # 14 Polarization: 41.83 SS G_CDS: 2.03 Total: 43.86 kcal Atomic # 16 Polarization: -0.72 SS G_CDS: -1.17 Total: -1.89 kcal Total: -67.05 3.04 -64.01 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000874260802.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.355 kcal (2) G-P(sol) polarization free energy of solvation -67.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.013 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds