Wall clock time and date at job start Thu Apr 9 2020 12:15:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.47054 * 2 1 4 4 C 1.50694 * 109.47268 * 240.00086 * 2 1 3 5 5 H 1.07998 * 120.00435 * 240.00353 * 4 2 1 6 6 C 1.37882 * 119.99876 * 59.99923 * 4 2 1 7 7 N 1.31512 * 120.00133 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 119.99906 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.47206 * 59.99630 * 8 6 4 10 10 H 1.48493 * 109.47295 * 180.02562 * 8 6 4 11 11 H 1.48508 * 109.46785 * 299.99883 * 8 6 4 12 12 N 1.46903 * 109.46963 * 120.00075 * 2 1 3 13 13 C 1.46903 * 110.99595 * 275.00167 * 12 2 1 14 14 C 1.53001 * 109.46580 * 180.02562 * 13 12 2 15 15 H 1.09000 * 109.49561 * 60.02614 * 14 13 12 16 16 C 1.53098 * 109.47861 * 180.02562 * 14 13 12 17 17 C 1.53180 * 109.16075 * 177.59094 * 16 14 13 18 18 C 1.53175 * 109.03606 * 303.01560 * 17 16 14 19 19 C 1.53092 * 109.16344 * 56.98567 * 18 17 16 20 20 C 1.52999 * 109.48062 * 182.41091 * 19 18 17 21 21 C 1.52998 * 109.48122 * 62.37269 * 19 18 17 22 22 O 1.42905 * 109.48128 * 299.99510 * 14 13 12 23 23 H 1.09000 * 109.47363 * 60.00182 * 1 2 3 24 24 H 1.09003 * 109.47054 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.47057 * 299.99803 * 1 2 3 26 26 H 0.97002 * 119.99816 * 180.02562 * 7 6 4 27 27 H 1.00900 * 110.99564 * 151.05205 * 12 2 1 28 28 H 1.08993 * 109.47286 * 60.00445 * 13 12 2 29 29 H 1.08996 * 109.47266 * 299.99615 * 13 12 2 30 30 H 1.08996 * 109.52270 * 57.68339 * 16 14 13 31 31 H 1.08995 * 109.57012 * 297.52187 * 16 14 13 32 32 H 1.09005 * 109.54069 * 183.15152 * 17 16 14 33 33 H 1.08996 * 109.62096 * 62.93059 * 17 16 14 34 34 H 1.09004 * 109.52714 * 297.07587 * 18 17 16 35 35 H 1.09001 * 109.57654 * 176.92317 * 18 17 16 36 36 H 1.09001 * 109.46907 * 179.97438 * 20 19 18 37 37 H 1.09002 * 109.47213 * 299.93866 * 20 19 18 38 38 H 1.08996 * 109.47804 * 59.93929 * 20 19 18 39 39 H 1.09000 * 109.46995 * 300.05806 * 21 19 18 40 40 H 1.08991 * 109.47029 * 60.05718 * 21 19 18 41 41 H 1.08997 * 109.46951 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6532 -1.5885 -1.1314 6 6 1.6993 -0.2393 -2.4827 7 7 0.9436 0.8303 -2.6034 8 14 2.3214 -1.1202 -4.0079 9 1 1.8259 -2.5201 -4.0077 10 1 1.8270 -0.4198 -5.2204 11 1 3.8065 -1.1207 -4.0081 12 7 2.0196 -0.6925 1.1995 13 6 2.0823 0.2226 2.3469 14 6 2.5961 -0.5329 3.5742 15 1 3.5918 -0.9260 3.3688 16 6 2.6609 0.4204 4.7703 17 6 3.1184 -0.3568 6.0085 18 6 2.1575 -1.5254 6.2480 19 6 2.1120 -2.4036 4.9948 20 6 1.1088 -3.5397 5.2040 21 6 3.5004 -2.9904 4.7324 22 8 1.7099 -1.6130 3.8744 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 0.7089 1.1615 -3.4844 27 1 2.9173 -1.1204 1.0287 28 1 1.0870 0.6163 2.5525 29 1 2.7587 1.0462 2.1183 30 1 1.6738 0.8456 4.9512 31 1 3.3698 1.2215 4.5608 32 1 3.1130 0.3033 6.8759 33 1 4.1260 -0.7402 5.8483 34 1 1.1600 -1.1396 6.4588 35 1 2.5056 -2.1169 7.0948 36 1 1.0763 -4.1645 4.3114 37 1 1.4160 -4.1430 6.0583 38 1 0.1199 -3.1213 5.3914 39 1 4.2149 -2.1808 4.5839 40 1 3.8073 -3.5936 5.5867 41 1 3.4680 -3.6152 3.8399 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000878821491.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:15:47 Heat of formation + Delta-G solvation = -65.740351 kcal Electronic energy + Delta-G solvation = -18357.605161 eV Core-core repulsion = 15657.647620 eV Total energy + Delta-G solvation = -2699.957541 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.83971 -35.95934 -33.75677 -33.44566 -32.07916 -29.38857 -27.57216 -27.22759 -25.31403 -24.59755 -22.04813 -21.19795 -19.64984 -19.03125 -16.59216 -16.14842 -15.48069 -14.99182 -14.73009 -14.27664 -13.97251 -13.79179 -13.13288 -12.99429 -12.60710 -12.43811 -12.22414 -11.98761 -11.79217 -11.62276 -11.52676 -11.20539 -11.00755 -10.88687 -10.86183 -10.69424 -10.51671 -10.19695 -10.05753 -10.00813 -9.58887 -9.01284 -8.74607 -8.41383 -7.10632 -5.97005 -4.03068 3.34451 3.38626 3.41776 3.95807 4.44210 4.73787 4.78759 4.84405 4.96292 5.15777 5.30649 5.33888 5.41500 5.49181 5.57612 5.67287 5.72921 5.78248 5.83806 5.87981 5.92821 5.97509 6.02714 6.14721 6.17455 6.28684 6.38418 6.41057 6.58993 6.98271 7.24643 7.33578 7.58609 7.72617 7.84673 7.98641 8.35788 8.49490 8.77388 9.08587 9.62473 11.09327 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.036174 B = 0.005197 C = 0.004983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 773.842833 B = 5386.016619 C = 5617.413157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.211 3.789 3 H -0.002 1.002 4 C -0.516 4.516 5 H 0.059 0.941 6 C 0.061 3.939 7 N -0.891 5.891 8 Si 0.897 3.103 9 H -0.276 1.276 10 H -0.288 1.288 11 H -0.278 1.278 12 N -0.678 5.678 13 C 0.069 3.931 14 C 0.095 3.905 15 H 0.054 0.946 16 C -0.151 4.151 17 C -0.121 4.121 18 C -0.142 4.142 19 C 0.107 3.893 20 C -0.136 4.136 21 C -0.177 4.177 22 O -0.343 6.343 23 H 0.078 0.922 24 H 0.031 0.969 25 H 0.003 0.997 26 H 0.261 0.739 27 H 0.327 0.673 28 H 0.069 0.931 29 H 0.030 0.970 30 H 0.070 0.930 31 H 0.069 0.931 32 H 0.061 0.939 33 H 0.063 0.937 34 H 0.068 0.932 35 H 0.066 0.934 36 H 0.065 0.935 37 H 0.063 0.937 38 H 0.061 0.939 39 H 0.060 0.940 40 H 0.058 0.942 41 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.038 -3.689 16.871 17.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.104 3.896 3 H 0.015 0.985 4 C -0.555 4.555 5 H 0.077 0.923 6 C -0.140 4.140 7 N -0.530 5.530 8 Si 0.725 3.275 9 H -0.202 1.202 10 H -0.213 1.213 11 H -0.204 1.204 12 N -0.308 5.308 13 C -0.061 4.061 14 C 0.037 3.963 15 H 0.071 0.929 16 C -0.189 4.189 17 C -0.159 4.159 18 C -0.180 4.180 19 C 0.067 3.933 20 C -0.193 4.193 21 C -0.235 4.235 22 O -0.262 6.262 23 H 0.097 0.903 24 H 0.051 0.949 25 H 0.022 0.978 26 H 0.071 0.929 27 H 0.144 0.856 28 H 0.088 0.912 29 H 0.048 0.952 30 H 0.089 0.911 31 H 0.088 0.912 32 H 0.080 0.920 33 H 0.082 0.918 34 H 0.087 0.913 35 H 0.085 0.915 36 H 0.084 0.916 37 H 0.082 0.918 38 H 0.080 0.920 39 H 0.079 0.921 40 H 0.077 0.923 41 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 3.151 -3.849 16.773 17.495 hybrid contribution 1.329 0.246 -0.898 1.623 sum 4.480 -3.603 15.875 16.884 Atomic orbital electron populations 1.21684 0.97878 0.99363 0.99115 1.19101 0.92709 0.92102 0.85697 0.98452 1.21241 1.31348 1.12405 0.90510 0.92328 1.24921 0.95105 0.95015 0.98992 1.69897 1.36711 1.22929 1.23453 0.86589 0.79000 0.79825 0.82127 1.20199 1.21337 1.20403 1.60631 1.31823 1.32828 1.05543 1.21922 1.00371 0.93484 0.90357 1.22154 0.93476 0.87057 0.93661 0.92852 1.22204 1.02366 0.98775 0.95583 1.21609 0.99129 0.97149 0.97979 1.22188 1.00411 0.97322 0.98056 1.21410 0.94178 0.91053 0.86612 1.21713 0.98792 0.96873 1.01897 1.22438 0.97328 1.01416 1.02300 1.88177 1.48670 1.42114 1.47275 0.90319 0.94948 0.97761 0.92948 0.85621 0.91235 0.95205 0.91103 0.91227 0.91977 0.91841 0.91285 0.91549 0.91578 0.91837 0.92022 0.92123 0.92270 0.91538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.20 9.19 37.16 0.34 -2.86 16 2 C 0.21 5.57 2.60 -68.87 -0.18 5.39 16 3 H 0.00 -0.06 7.80 -51.93 -0.40 -0.46 16 4 C -0.52 -14.57 8.59 -34.44 -0.30 -14.87 16 5 H 0.06 1.63 7.62 -52.49 -0.40 1.23 16 6 C 0.06 1.73 5.30 -17.82 -0.09 1.64 16 7 N -0.89 -26.00 11.32 55.43 0.63 -25.37 16 8 Si 0.90 21.65 29.54 -169.99 -5.02 16.63 16 9 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 10 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 11 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 12 N -0.68 -15.29 6.17 -107.95 -0.67 -15.95 16 13 C 0.07 1.31 5.18 -3.82 -0.02 1.29 16 14 C 0.09 1.49 2.52 -26.68 -0.07 1.42 16 15 H 0.05 0.82 6.34 -51.93 -0.33 0.49 16 16 C -0.15 -1.92 5.42 -26.59 -0.14 -2.07 16 17 C -0.12 -1.30 5.72 -26.55 -0.15 -1.45 16 18 C -0.14 -1.56 4.92 -26.59 -0.13 -1.69 16 19 C 0.11 1.39 1.11 -90.57 -0.10 1.29 16 20 C -0.14 -1.59 8.85 37.16 0.33 -1.26 16 21 C -0.18 -2.08 7.93 37.16 0.29 -1.79 16 22 O -0.34 -5.79 9.74 -35.23 -0.34 -6.13 16 23 H 0.08 2.21 6.07 -51.93 -0.32 1.89 16 24 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 25 H 0.00 0.08 7.45 -51.93 -0.39 -0.30 16 26 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 27 H 0.33 7.19 8.22 -39.29 -0.32 6.87 16 28 H 0.07 1.39 7.43 -51.93 -0.39 1.00 16 29 H 0.03 0.56 8.05 -51.93 -0.42 0.14 16 30 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 31 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.06 0.65 6.62 -51.93 -0.34 0.31 16 34 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 35 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 38 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.06 0.71 4.98 -51.93 -0.26 0.45 16 40 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 LS Contribution 313.89 15.07 4.73 4.73 Total: -1.00 -29.74 313.89 -8.24 -37.98 By element: Atomic # 1 Polarization: 10.43 SS G_CDS: -7.35 Total: 3.08 kcal Atomic # 6 Polarization: -14.74 SS G_CDS: -0.22 Total: -14.96 kcal Atomic # 7 Polarization: -41.29 SS G_CDS: -0.04 Total: -41.33 kcal Atomic # 8 Polarization: -5.79 SS G_CDS: -0.34 Total: -6.13 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -29.74 -8.24 -37.98 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878821491.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.759 kcal (2) G-P(sol) polarization free energy of solvation -29.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.981 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds