Wall clock time and date at job start Thu Apr 9 2020 12:15:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47050 * 2 1 4 4 C 1.50697 * 109.47239 * 239.99664 * 2 1 3 5 5 H 1.07994 * 120.00496 * 239.99942 * 4 2 1 6 6 C 1.37878 * 119.99687 * 60.00100 * 4 2 1 7 7 N 1.31518 * 120.00216 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 120.00016 * 179.97438 * 6 4 2 9 9 H 1.48505 * 109.47195 * 90.00222 * 8 6 4 10 10 H 1.48504 * 109.47636 * 210.00509 * 8 6 4 11 11 H 1.48508 * 109.47108 * 330.00152 * 8 6 4 12 12 N 1.46902 * 109.46626 * 119.99824 * 2 1 3 13 13 C 1.46901 * 111.00221 * 274.99771 * 12 2 1 14 14 C 1.52993 * 109.47164 * 180.02562 * 13 12 2 15 15 H 1.08994 * 109.48431 * 304.97911 * 14 13 12 16 16 C 1.53096 * 109.48272 * 184.94298 * 14 13 12 17 17 C 1.53177 * 109.16686 * 182.41039 * 16 14 13 18 18 C 1.53174 * 109.03688 * 56.98030 * 17 16 14 19 19 C 1.53094 * 109.16246 * 303.02342 * 18 17 16 20 20 C 1.53004 * 109.47993 * 297.61962 * 19 18 17 21 21 C 1.53006 * 109.48036 * 177.59412 * 19 18 17 22 22 O 1.42901 * 109.41840 * 57.60659 * 19 18 17 23 23 H 1.09001 * 109.46801 * 300.00112 * 1 2 3 24 24 H 1.09001 * 109.46998 * 59.99708 * 1 2 3 25 25 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 26 26 H 0.96999 * 120.00239 * 180.02562 * 7 6 4 27 27 H 1.00903 * 111.00184 * 38.95769 * 12 2 1 28 28 H 1.09001 * 109.47359 * 300.00457 * 13 12 2 29 29 H 1.08999 * 109.46991 * 59.99963 * 13 12 2 30 30 H 1.09002 * 109.52110 * 302.32186 * 16 14 13 31 31 H 1.08999 * 109.51856 * 62.50159 * 16 14 13 32 32 H 1.09005 * 109.53851 * 297.11348 * 17 16 14 33 33 H 1.08991 * 109.61776 * 176.89870 * 17 16 14 34 34 H 1.08997 * 109.52447 * 183.11853 * 18 17 16 35 35 H 1.08996 * 109.57382 * 62.95529 * 18 17 16 36 36 H 1.09001 * 109.47114 * 179.97438 * 20 19 18 37 37 H 1.08991 * 109.47278 * 299.94674 * 20 19 18 38 38 H 1.09000 * 109.46352 * 59.94797 * 20 19 18 39 39 H 1.09008 * 109.46624 * 300.05118 * 21 19 18 40 40 H 1.08997 * 109.47087 * 60.04992 * 21 19 18 41 41 H 1.08995 * 109.47171 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9436 0.8302 -2.6034 8 14 2.3226 -1.1196 -4.0078 9 1 1.3448 -2.1616 -4.4123 10 1 2.4875 -0.1403 -5.1120 11 1 3.6310 -1.7566 -3.7118 12 7 2.0196 -0.6925 1.1995 13 6 2.0824 0.2226 2.3470 14 6 2.5961 -0.5328 3.5742 15 1 1.9707 -1.4079 3.7505 16 6 2.5452 0.3861 4.7977 17 6 3.1169 -0.3571 6.0090 18 6 4.5418 -0.8170 5.6862 19 6 4.5156 -1.6894 4.4284 20 6 3.6730 -2.9391 4.6918 21 6 5.9429 -2.1035 4.0648 22 8 3.9445 -0.9485 3.3481 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 0.7090 1.1614 -3.4844 27 1 1.4495 -1.4979 1.4101 28 1 2.7588 1.0462 2.1183 29 1 1.0871 0.6164 2.5525 30 1 3.1379 1.2806 4.6062 31 1 1.5118 0.6688 4.9981 32 1 2.4952 -1.2246 6.2311 33 1 3.1351 0.3087 6.8716 34 1 4.9363 -1.3947 6.5220 35 1 5.1757 0.0526 5.5130 36 1 3.6541 -3.5599 3.7960 37 1 4.1088 -3.5041 5.5157 38 1 2.6564 -2.6437 4.9513 39 1 6.5431 -1.2130 3.8777 40 1 6.3784 -2.6686 4.8889 41 1 5.9241 -2.7243 3.1691 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000878821492.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:15:48 Heat of formation + Delta-G solvation = -84.044023 kcal Electronic energy + Delta-G solvation = -18342.388402 eV Core-core repulsion = 15641.637154 eV Total energy + Delta-G solvation = -2700.751248 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.92309 -37.84972 -35.24451 -34.47440 -33.86327 -31.01401 -28.81846 -28.22334 -27.23861 -26.01770 -23.14912 -22.45640 -22.09166 -20.04475 -18.40921 -17.37477 -16.83684 -16.47889 -16.09697 -15.79284 -15.26728 -14.93743 -14.73655 -14.46686 -13.96597 -13.62080 -13.48564 -13.30333 -13.07080 -12.88715 -12.85348 -12.71747 -12.67511 -12.48785 -12.36709 -12.16417 -12.03055 -11.86594 -11.77437 -11.47306 -11.06943 -10.79840 -10.48109 -10.09494 -8.89014 -8.08982 -6.19975 1.42357 1.43338 1.54975 2.44802 2.85737 3.18754 3.52608 3.84253 3.91162 3.97409 4.08322 4.22919 4.31299 4.41386 4.46065 4.58196 4.69036 4.72317 4.75212 4.84733 4.85239 4.88705 4.94118 5.01570 5.06788 5.08908 5.10543 5.16970 5.20411 5.29522 5.42381 5.42937 5.55945 5.69788 5.82340 6.28345 6.60459 6.68030 6.86920 6.96274 7.49922 8.96631 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.032689 B = 0.005478 C = 0.004949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 856.361130 B = 5109.802907 C = 5655.991664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.215 3.785 3 H -0.003 1.003 4 C -0.514 4.514 5 H 0.051 0.949 6 C 0.007 3.993 7 N -0.924 5.924 8 Si 0.962 3.038 9 H -0.273 1.273 10 H -0.282 1.282 11 H -0.273 1.273 12 N -0.681 5.681 13 C 0.069 3.931 14 C 0.101 3.899 15 H 0.060 0.940 16 C -0.148 4.148 17 C -0.117 4.117 18 C -0.138 4.138 19 C 0.095 3.905 20 C -0.173 4.173 21 C -0.136 4.136 22 O -0.383 6.383 23 H 0.026 0.974 24 H 0.062 0.938 25 H 0.033 0.967 26 H 0.261 0.739 27 H 0.329 0.671 28 H 0.049 0.951 29 H 0.040 0.960 30 H 0.061 0.939 31 H 0.082 0.918 32 H 0.073 0.927 33 H 0.082 0.918 34 H 0.092 0.908 35 H 0.061 0.939 36 H 0.048 0.952 37 H 0.085 0.915 38 H 0.061 0.939 39 H 0.053 0.947 40 H 0.093 0.907 41 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.394 -4.576 18.743 19.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.106 3.894 3 H 0.015 0.985 4 C -0.553 4.553 5 H 0.069 0.931 6 C -0.190 4.190 7 N -0.564 5.564 8 Si 0.787 3.213 9 H -0.198 1.198 10 H -0.208 1.208 11 H -0.198 1.198 12 N -0.311 5.311 13 C -0.060 4.060 14 C 0.043 3.957 15 H 0.077 0.923 16 C -0.186 4.186 17 C -0.155 4.155 18 C -0.176 4.176 19 C 0.056 3.944 20 C -0.230 4.230 21 C -0.193 4.193 22 O -0.303 6.303 23 H 0.045 0.955 24 H 0.081 0.919 25 H 0.052 0.948 26 H 0.070 0.930 27 H 0.146 0.854 28 H 0.067 0.933 29 H 0.058 0.942 30 H 0.080 0.920 31 H 0.100 0.900 32 H 0.092 0.908 33 H 0.101 0.899 34 H 0.111 0.889 35 H 0.080 0.920 36 H 0.067 0.933 37 H 0.104 0.896 38 H 0.080 0.920 39 H 0.072 0.928 40 H 0.112 0.888 41 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 5.102 -4.334 18.272 19.459 hybrid contribution -0.944 0.022 -0.852 1.272 sum 4.158 -4.311 17.420 18.421 Atomic orbital electron populations 1.22231 0.99759 0.99304 1.00141 1.18945 0.90144 0.92505 0.87756 0.98475 1.21446 1.30268 1.12357 0.91194 0.93102 1.25731 0.95506 0.95909 1.01889 1.70011 1.38184 1.24234 1.23970 0.85502 0.78734 0.78265 0.78764 1.19836 1.20802 1.19809 1.60567 1.57824 1.09300 1.03409 1.21939 0.98134 0.95466 0.90503 1.22025 0.84091 0.96061 0.93483 0.92257 1.22173 1.02461 0.98923 0.95033 1.21617 0.96000 1.00629 0.97206 1.22162 0.97720 1.00046 0.97654 1.21739 0.94252 0.91140 0.87232 1.22400 1.00658 0.97584 1.02388 1.21760 0.93625 1.01511 1.02371 1.88115 1.27303 1.73242 1.41602 0.95454 0.91950 0.94823 0.92990 0.85434 0.93271 0.94205 0.91989 0.89956 0.90837 0.89931 0.88949 0.92040 0.93309 0.89647 0.91984 0.92771 0.88794 0.93290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -7.66 8.94 71.98 0.64 -7.02 16 2 C 0.22 11.48 2.57 44.17 0.11 11.60 16 3 H 0.00 -0.16 7.80 -2.39 -0.02 -0.18 16 4 C -0.51 -30.04 8.84 25.60 0.23 -29.82 16 5 H 0.05 3.02 7.81 -2.91 -0.02 3.00 16 6 C 0.01 0.43 5.30 84.65 0.45 0.88 16 7 N -0.92 -54.81 11.32 21.45 0.24 -54.57 16 8 Si 0.96 45.53 29.54 68.60 2.03 47.56 16 9 H -0.27 -12.42 7.11 99.48 0.71 -11.72 16 10 H -0.28 -13.02 7.11 99.48 0.71 -12.32 16 11 H -0.27 -12.81 7.11 99.48 0.71 -12.11 16 12 N -0.68 -30.95 6.18 -495.45 -3.06 -34.01 16 13 C 0.07 2.63 5.15 86.30 0.44 3.08 16 14 C 0.10 3.10 2.50 30.62 0.08 3.17 16 15 H 0.06 1.73 6.34 -2.39 -0.02 1.71 16 16 C -0.15 -3.48 5.42 30.69 0.17 -3.31 16 17 C -0.12 -2.13 5.72 30.71 0.18 -1.96 16 18 C -0.14 -2.66 4.92 30.68 0.15 -2.51 16 19 C 0.10 2.34 1.11 -10.76 -0.01 2.33 16 20 C -0.17 -3.71 7.94 71.98 0.57 -3.14 16 21 C -0.14 -3.07 8.85 71.98 0.64 -2.43 16 22 O -0.38 -12.99 9.82 -148.98 -1.46 -14.45 16 23 H 0.03 1.18 7.45 -2.39 -0.02 1.16 16 24 H 0.06 3.43 6.07 -2.39 -0.01 3.42 16 25 H 0.03 1.57 8.13 -2.39 -0.02 1.55 16 26 H 0.26 14.68 8.31 -92.71 -0.77 13.91 16 27 H 0.33 13.97 8.47 -89.69 -0.76 13.21 16 28 H 0.05 2.06 8.06 -2.39 -0.02 2.04 16 29 H 0.04 1.42 7.44 -2.39 -0.02 1.41 16 30 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 31 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 32 H 0.07 1.22 6.62 -2.38 -0.02 1.20 16 33 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 34 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 35 H 0.06 1.28 8.14 -2.39 -0.02 1.27 16 36 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 37 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 38 H 0.06 1.29 4.97 -2.39 -0.01 1.28 16 39 H 0.05 1.28 8.14 -2.38 -0.02 1.26 16 40 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 41 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 Total: -1.00 -65.15 314.32 1.61 -63.54 By element: Atomic # 1 Polarization: 20.85 SS G_CDS: 0.22 Total: 21.08 kcal Atomic # 6 Polarization: -32.79 SS G_CDS: 3.64 Total: -29.15 kcal Atomic # 7 Polarization: -85.76 SS G_CDS: -2.82 Total: -88.57 kcal Atomic # 8 Polarization: -12.99 SS G_CDS: -1.46 Total: -14.45 kcal Atomic # 14 Polarization: 45.53 SS G_CDS: 2.03 Total: 47.56 kcal Total: -65.15 1.61 -63.54 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878821492.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.505 kcal (2) G-P(sol) polarization free energy of solvation -65.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.539 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds