Wall clock time and date at job start Thu Apr 9 2020 12:16:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09005 * 109.47444 * 2 1 4 4 C 1.53005 * 109.47204 * 119.99747 * 2 1 3 5 5 C 1.50698 * 109.47234 * 182.98478 * 4 2 1 6 6 H 1.07996 * 120.00146 * 5.11011 * 5 4 2 7 7 C 1.37881 * 119.99895 * 185.12094 * 5 4 2 8 8 N 1.31506 * 120.00082 * 359.97438 * 7 5 4 9 9 Si 1.86804 * 119.99915 * 179.97438 * 7 5 4 10 10 H 1.48499 * 109.47079 * 59.99668 * 9 7 5 11 11 H 1.48495 * 109.47177 * 179.97438 * 9 7 5 12 12 H 1.48502 * 109.47155 * 299.99885 * 9 7 5 13 13 N 1.46893 * 109.47519 * 239.99689 * 2 1 3 14 14 C 1.46855 * 110.99774 * 69.85923 * 13 2 1 15 15 C 1.53041 * 109.52083 * 174.16366 * 14 13 2 16 16 H 1.09003 * 109.50198 * 299.23604 * 15 14 13 17 17 O 1.42902 * 109.49951 * 179.12626 * 15 14 13 18 18 C 1.53114 * 109.28081 * 59.18206 * 15 14 13 19 19 C 1.53122 * 109.16057 * 302.34673 * 18 15 14 20 20 C 1.53000 * 109.50122 * 297.71136 * 19 18 15 21 21 C 1.53000 * 109.53255 * 177.61299 * 19 18 15 22 22 C 1.46845 * 110.99958 * 305.65868 * 13 2 1 23 23 H 1.09005 * 109.47126 * 300.00137 * 1 2 3 24 24 H 1.08996 * 109.46967 * 60.00081 * 1 2 3 25 25 H 1.09001 * 109.46902 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.47250 * 302.98188 * 4 2 1 27 27 H 1.09002 * 109.47131 * 62.98106 * 4 2 1 28 28 H 0.97000 * 120.00154 * 180.02562 * 8 7 5 29 29 H 1.08993 * 109.46472 * 294.18076 * 14 13 2 30 30 H 1.09004 * 109.45866 * 54.15526 * 14 13 2 31 31 H 0.96699 * 114.00235 * 59.99930 * 17 15 14 32 32 H 1.09001 * 109.52449 * 182.43554 * 18 15 14 33 33 H 1.09002 * 109.57210 * 62.27994 * 18 15 14 34 34 H 1.09000 * 109.46926 * 179.80729 * 20 19 18 35 35 H 1.09006 * 109.46892 * 299.80122 * 20 19 18 36 36 H 1.08996 * 109.47131 * 59.80256 * 20 19 18 37 37 H 1.08998 * 109.47028 * 300.17246 * 21 19 18 38 38 H 1.09002 * 109.47290 * 60.17645 * 21 19 18 39 39 H 1.09006 * 109.46910 * 180.17297 * 21 19 18 40 40 H 1.09001 * 109.45891 * 305.84779 * 22 13 2 41 41 H 1.09002 * 109.46856 * 65.82460 * 22 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5452 -0.6575 1.2869 6 1 4.0801 -0.0836 0.5446 7 6 4.2395 -1.3320 2.2688 8 7 3.5882 -2.0305 3.1728 9 14 6.1053 -1.2535 2.3149 10 1 6.5376 0.1581 2.4751 11 1 6.6064 -2.0570 3.4587 12 1 6.6552 -1.7988 1.0478 13 7 2.0197 -0.6925 -1.1993 14 6 1.7501 0.0954 -2.4089 15 6 2.3996 -0.5836 -3.6169 16 1 3.4778 -0.6393 -3.4669 17 8 2.1198 0.1725 -4.7967 18 6 1.8309 -1.9971 -3.7687 19 6 2.0820 -2.7812 -2.4776 20 6 3.5884 -2.9080 -2.2419 21 6 1.4646 -4.1759 -2.5979 22 6 1.4417 -2.0384 -1.3027 23 1 -0.3634 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.6337 -0.2391 2.1385 27 1 1.7210 -1.7632 1.2230 28 1 4.0766 -2.5047 3.8638 29 1 0.6737 0.1632 -2.5657 30 1 2.1635 1.0969 -2.2895 31 1 2.4496 1.0811 -4.7690 32 1 2.3221 -2.4999 -4.6017 33 1 0.7589 -1.9410 -3.9580 34 1 3.7666 -3.4633 -1.3210 35 1 4.0439 -3.4371 -3.0791 36 1 4.0279 -1.9141 -2.1578 37 1 0.3917 -4.0849 -2.7671 38 1 1.9209 -4.7044 -3.4348 39 1 1.6413 -4.7321 -1.6772 40 1 1.6311 -2.5868 -0.3799 41 1 0.3666 -1.9607 -1.4648 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000879621140.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:16:02 Heat of formation + Delta-G solvation = -85.467503 kcal Electronic energy + Delta-G solvation = -19123.571629 eV Core-core repulsion = 16422.758655 eV Total energy + Delta-G solvation = -2700.812975 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.03463 -37.76755 -36.79323 -34.75664 -32.48880 -30.43365 -29.18070 -28.05394 -27.58837 -25.67193 -24.61703 -22.48021 -20.74928 -19.37513 -18.34154 -17.93584 -16.94473 -16.54321 -16.10782 -15.66995 -15.23233 -15.02984 -14.65083 -14.57889 -14.22111 -13.73265 -13.62234 -13.27447 -13.02934 -12.97790 -12.77935 -12.70098 -12.56269 -12.41739 -12.25038 -12.19257 -11.91308 -11.53566 -11.45596 -11.11681 -11.08288 -10.94354 -10.67702 -10.43988 -8.88555 -8.06814 -6.10485 1.42683 1.44746 1.51827 2.48978 2.95234 3.28027 3.41231 3.83465 3.90585 4.03923 4.12691 4.23863 4.32125 4.42671 4.49443 4.52997 4.61195 4.67844 4.79637 4.84564 4.89351 4.91200 5.04739 5.05377 5.08257 5.13841 5.19138 5.23106 5.30138 5.36531 5.44936 5.56683 5.67325 5.72056 5.92075 6.33643 6.43401 6.53392 6.90524 7.02139 7.54591 9.05109 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.021996 B = 0.008189 C = 0.007707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1272.639007 B = 3418.193218 C = 3632.006382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.095 3.905 3 H 0.066 0.934 4 C 0.037 3.963 5 C -0.490 4.490 6 H 0.057 0.943 7 C -0.002 4.002 8 N -0.940 5.940 9 Si 0.950 3.050 10 H -0.271 1.271 11 H -0.290 1.290 12 H -0.271 1.271 13 N -0.518 5.518 14 C 0.027 3.973 15 C 0.112 3.888 16 H 0.060 0.940 17 O -0.577 6.577 18 C -0.092 4.092 19 C -0.055 4.055 20 C -0.126 4.126 21 C -0.135 4.135 22 C 0.071 3.929 23 H 0.057 0.943 24 H 0.062 0.938 25 H 0.049 0.951 26 H -0.012 1.012 27 H -0.001 1.001 28 H 0.257 0.743 29 H 0.036 0.964 30 H 0.075 0.925 31 H 0.393 0.607 32 H 0.076 0.924 33 H 0.064 0.936 34 H 0.031 0.969 35 H 0.061 0.939 36 H 0.054 0.946 37 H 0.061 0.939 38 H 0.072 0.928 39 H 0.048 0.952 40 H 0.052 0.948 41 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.983 1.144 -14.227 14.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.013 4.013 3 H 0.084 0.916 4 C 0.000 4.000 5 C -0.529 4.529 6 H 0.075 0.925 7 C -0.198 4.198 8 N -0.582 5.582 9 Si 0.776 3.224 10 H -0.196 1.196 11 H -0.216 1.216 12 H -0.196 1.196 13 N -0.243 5.243 14 C -0.101 4.101 15 C 0.053 3.947 16 H 0.078 0.922 17 O -0.384 6.384 18 C -0.130 4.130 19 C -0.056 4.056 20 C -0.183 4.183 21 C -0.192 4.192 22 C -0.057 4.057 23 H 0.076 0.924 24 H 0.081 0.919 25 H 0.068 0.932 26 H 0.006 0.994 27 H 0.017 0.983 28 H 0.066 0.934 29 H 0.054 0.946 30 H 0.094 0.906 31 H 0.242 0.758 32 H 0.095 0.905 33 H 0.083 0.917 34 H 0.051 0.949 35 H 0.080 0.920 36 H 0.073 0.927 37 H 0.080 0.920 38 H 0.091 0.909 39 H 0.067 0.933 40 H 0.070 0.930 41 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -3.712 0.450 -14.235 14.718 hybrid contribution 0.301 0.532 0.956 1.135 sum -3.411 0.982 -13.279 13.745 Atomic orbital electron populations 1.22387 0.97531 1.01511 1.01848 1.21624 0.91829 0.97226 0.90660 0.91596 1.19041 0.95337 0.94404 0.91191 1.21366 0.92748 1.28352 1.10423 0.92475 1.25772 1.02448 0.95765 0.95807 1.70079 1.36900 1.34202 1.17065 0.85728 0.81201 0.78096 0.77350 1.19640 1.21618 1.19583 1.61840 1.59129 1.02111 1.01197 1.22796 0.98808 0.97691 0.90836 1.21720 0.98407 0.91451 0.83154 0.92201 1.86437 1.83314 1.29663 1.39032 1.21501 1.01160 0.93287 0.97051 1.20516 0.96171 0.95413 0.93495 1.21704 0.94780 1.01721 1.00141 1.21781 1.00780 0.94594 1.02091 1.22078 0.95372 0.90053 0.98173 0.92386 0.91863 0.93217 0.99380 0.98292 0.93424 0.94637 0.90632 0.75770 0.90512 0.91697 0.94928 0.91960 0.92721 0.91982 0.90876 0.93274 0.92965 0.95031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.84 8.45 71.98 0.61 -5.24 16 2 C 0.09 3.80 2.28 44.92 0.10 3.90 16 3 H 0.07 2.65 7.99 -2.38 -0.02 2.63 16 4 C 0.04 1.92 4.34 29.85 0.13 2.05 16 5 C -0.49 -27.34 8.78 25.60 0.22 -27.12 16 6 H 0.06 3.14 7.75 -2.91 -0.02 3.12 16 7 C 0.00 -0.12 5.46 84.66 0.46 0.35 16 8 N -0.94 -57.42 13.29 21.45 0.28 -57.13 16 9 Si 0.95 45.17 29.54 68.60 2.03 47.20 16 10 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 11 H -0.29 -13.68 7.11 99.48 0.71 -12.98 16 12 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16 13 N -0.52 -18.90 3.55 -871.09 -3.09 -22.00 16 14 C 0.03 0.79 4.75 86.33 0.41 1.20 16 15 C 0.11 2.98 3.28 30.65 0.10 3.08 16 16 H 0.06 1.71 6.58 -2.39 -0.02 1.69 16 17 O -0.58 -13.58 13.32 -148.98 -1.98 -15.57 16 18 C -0.09 -2.41 4.44 30.67 0.14 -2.27 16 19 C -0.06 -1.62 0.77 -52.13 -0.04 -1.66 16 20 C -0.13 -4.08 8.04 71.98 0.58 -3.51 16 21 C -0.13 -3.36 8.48 71.98 0.61 -2.75 16 22 C 0.07 2.50 3.27 86.33 0.28 2.79 16 23 H 0.06 1.90 8.14 -2.38 -0.02 1.88 16 24 H 0.06 1.83 6.81 -2.39 -0.02 1.81 16 25 H 0.05 1.70 6.46 -2.39 -0.02 1.68 16 26 H -0.01 -0.67 8.14 -2.38 -0.02 -0.69 16 27 H 0.00 -0.07 6.29 -2.39 -0.02 -0.08 16 28 H 0.26 15.00 8.31 -92.71 -0.77 14.23 16 29 H 0.04 1.02 6.87 -2.39 -0.02 1.00 16 30 H 0.08 2.08 8.02 -2.38 -0.02 2.07 16 31 H 0.39 6.04 9.08 -74.06 -0.67 5.36 16 32 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 33 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 34 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 35 H 0.06 1.68 8.14 -2.38 -0.02 1.66 16 36 H 0.05 1.95 6.01 -2.39 -0.01 1.93 16 37 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 38 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 39 H 0.05 1.32 8.14 -2.38 -0.02 1.30 16 40 H 0.05 2.24 6.15 -2.39 -0.01 2.23 16 41 H 0.03 1.05 6.58 -2.39 -0.02 1.03 16 Total: -1.00 -63.93 309.54 1.16 -62.77 By element: Atomic # 1 Polarization: 13.59 SS G_CDS: 0.32 Total: 13.91 kcal Atomic # 6 Polarization: -32.78 SS G_CDS: 3.61 Total: -29.18 kcal Atomic # 7 Polarization: -76.32 SS G_CDS: -2.81 Total: -79.13 kcal Atomic # 8 Polarization: -13.58 SS G_CDS: -1.98 Total: -15.57 kcal Atomic # 14 Polarization: 45.17 SS G_CDS: 2.03 Total: 47.20 kcal Total: -63.93 1.16 -62.77 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000879621140.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.693 kcal (2) G-P(sol) polarization free energy of solvation -63.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.774 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds