Wall clock time and date at job start Thu Apr 9 2020 12:16:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42904 * 113.99346 * 2 1 4 4 C 1.53004 * 109.46593 * 179.97438 * 3 2 1 5 5 N 1.46898 * 112.91124 * 311.17146 * 4 3 2 6 6 C 1.46894 * 111.00193 * 171.83353 * 5 4 3 7 7 C 1.46900 * 111.00086 * 295.79528 * 5 4 3 8 8 C 1.53001 * 109.47212 * 164.56352 * 7 5 4 9 9 C 1.53002 * 109.46893 * 179.97438 * 8 7 5 10 10 C 1.50699 * 109.46554 * 179.97438 * 9 8 7 11 11 H 1.08001 * 120.00454 * 359.97438 * 10 9 8 12 12 C 1.37886 * 119.99823 * 180.02562 * 10 9 8 13 13 N 1.31513 * 119.99731 * 359.97438 * 12 10 9 14 14 Si 1.86801 * 120.00053 * 179.97438 * 12 10 9 15 15 H 1.48496 * 109.47136 * 359.97438 * 14 12 10 16 16 H 1.48499 * 109.46643 * 119.99975 * 14 12 10 17 17 H 1.48498 * 109.46971 * 239.99645 * 14 12 10 18 18 C 1.53783 * 113.61204 * 179.97438 * 4 3 2 19 19 C 1.53786 * 87.07979 * 220.01816 * 18 4 3 20 20 C 1.53777 * 113.61500 * 82.42841 * 4 3 2 21 21 H 1.09001 * 109.47494 * 299.99803 * 1 2 3 22 22 H 1.09000 * 109.47132 * 59.99984 * 1 2 3 23 23 H 1.09002 * 109.46825 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.47521 * 60.00346 * 3 2 1 25 25 H 1.09001 * 109.47343 * 299.99541 * 3 2 1 26 26 H 1.09007 * 109.46867 * 67.47177 * 6 5 4 27 27 H 1.09007 * 109.47633 * 187.46808 * 6 5 4 28 28 H 1.08997 * 109.47517 * 307.47194 * 6 5 4 29 29 H 1.09006 * 109.46690 * 284.56214 * 7 5 4 30 30 H 1.08997 * 109.47087 * 44.56161 * 7 5 4 31 31 H 1.08995 * 109.46756 * 299.99607 * 8 7 5 32 32 H 1.09003 * 109.47060 * 59.99502 * 8 7 5 33 33 H 1.08995 * 109.47401 * 299.99582 * 9 8 7 34 34 H 1.08997 * 109.46944 * 60.00092 * 9 8 7 35 35 H 0.97000 * 120.00028 * 179.97438 * 13 12 10 36 36 H 1.08997 * 113.61827 * 105.47452 * 18 4 3 37 37 H 1.09002 * 113.61613 * 334.56411 * 18 4 3 38 38 H 1.09004 * 113.61252 * 139.98110 * 19 18 4 39 39 H 1.09001 * 113.61425 * 270.88368 * 19 18 4 40 40 H 1.09001 * 113.61462 * 25.42783 * 20 4 3 41 41 H 1.09002 * 113.61172 * 254.52590 * 20 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3056 0.0000 4 6 3.5354 1.1848 0.0006 5 7 4.0347 0.2518 1.0196 6 6 5.4762 0.0193 0.8592 7 6 3.7266 0.7352 2.3721 8 6 3.9035 -0.4071 3.3745 9 6 3.5832 0.0965 4.7833 10 6 3.7569 -1.0288 5.7705 11 1 4.0645 -2.0056 5.4274 12 6 3.5220 -0.8117 7.1118 13 7 3.1470 0.3776 7.5295 14 14 3.7366 -2.2067 8.3354 15 1 4.1611 -3.4348 7.6165 16 1 4.7709 -1.8345 9.3339 17 1 2.4479 -2.4598 9.0284 18 6 4.2606 2.5408 0.0001 19 6 5.2612 1.9164 -0.9868 20 6 4.1354 0.9508 -1.3958 21 1 -0.3634 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 1.6885 1.8465 0.8900 25 1 1.6885 1.8464 -0.8900 26 1 6.0199 0.9356 1.0895 27 1 5.7944 -0.7722 1.5378 28 1 5.6843 -0.2780 -0.1686 29 1 4.4017 1.5516 2.6287 30 1 2.6969 1.0911 2.4049 31 1 3.2285 -1.2235 3.1179 32 1 4.9333 -0.7632 3.3416 33 1 4.2586 0.9127 5.0397 34 1 2.5536 0.4527 4.8164 35 1 2.9814 0.5303 8.4730 36 1 4.7012 2.8009 0.9625 37 1 3.6714 3.3510 -0.4296 38 1 5.5679 2.5931 -1.7844 39 1 6.1035 1.4235 -0.5013 40 1 3.5118 1.3259 -2.2074 41 1 4.4748 -0.0720 -1.5593 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000880186605.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:16:06 Heat of formation + Delta-G solvation = -17.972902 kcal Electronic energy + Delta-G solvation = -18228.963822 eV Core-core repulsion = 15531.077633 eV Total energy + Delta-G solvation = -2697.886189 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.54648 -37.19624 -35.19920 -33.05679 -30.79456 -29.57710 -27.04993 -26.09288 -25.57409 -24.55922 -22.86891 -21.46539 -19.79711 -18.68672 -16.51623 -16.21991 -15.96977 -15.81176 -15.21303 -14.52580 -14.43715 -14.03157 -13.72833 -13.08100 -13.01111 -12.43344 -12.30954 -12.19003 -11.85525 -11.69567 -11.45544 -11.14630 -11.03855 -10.81054 -10.59482 -10.53129 -10.48962 -10.29884 -10.09653 -9.52587 -9.40970 -9.22804 -8.97595 -8.28856 -7.85068 -5.94307 -3.95589 3.34947 3.42097 3.47301 3.79333 4.17762 4.51600 4.54028 4.64504 4.81824 4.90942 5.25202 5.38911 5.41702 5.43013 5.49584 5.58314 5.62378 5.64009 5.66946 5.74447 5.79244 5.81147 5.91330 5.94785 6.08834 6.16492 6.21809 6.29217 6.45529 6.81617 6.91564 7.23346 7.31644 7.51094 7.57005 7.76469 7.92304 8.07295 8.51531 9.12042 9.68063 11.17342 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.028115 B = 0.005229 C = 0.004784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 995.655841 B = 5353.532230 C = 5851.766727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.364 6.364 3 C 0.083 3.917 4 C 0.096 3.904 5 N -0.502 5.502 6 C 0.015 3.985 7 C 0.059 3.941 8 C -0.101 4.101 9 C 0.022 3.978 10 C -0.514 4.514 11 H 0.056 0.944 12 C 0.055 3.945 13 N -0.898 5.898 14 Si 0.891 3.109 15 H -0.272 1.272 16 H -0.285 1.285 17 H -0.284 1.284 18 C -0.168 4.168 19 C -0.159 4.159 20 C -0.127 4.127 21 H 0.040 0.960 22 H 0.033 0.967 23 H 0.084 0.916 24 H 0.048 0.952 25 H 0.048 0.952 26 H 0.028 0.972 27 H 0.071 0.929 28 H 0.068 0.932 29 H 0.027 0.973 30 H 0.066 0.934 31 H 0.056 0.944 32 H 0.045 0.955 33 H 0.012 0.988 34 H 0.014 0.986 35 H 0.259 0.741 36 H 0.071 0.929 37 H 0.082 0.918 38 H 0.063 0.937 39 H 0.097 0.903 40 H 0.081 0.919 41 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.131 3.931 -18.239 18.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.282 6.282 3 C 0.006 3.994 4 C 0.005 3.995 5 N -0.224 5.224 6 C -0.133 4.133 7 C -0.068 4.068 8 C -0.139 4.139 9 C -0.016 4.016 10 C -0.553 4.553 11 H 0.074 0.926 12 C -0.146 4.146 13 N -0.538 5.538 14 Si 0.719 3.281 15 H -0.197 1.197 16 H -0.211 1.211 17 H -0.211 1.211 18 C -0.207 4.207 19 C -0.196 4.196 20 C -0.164 4.164 21 H 0.058 0.942 22 H 0.051 0.949 23 H 0.102 0.898 24 H 0.066 0.934 25 H 0.066 0.934 26 H 0.046 0.954 27 H 0.089 0.911 28 H 0.087 0.913 29 H 0.045 0.955 30 H 0.085 0.915 31 H 0.075 0.925 32 H 0.064 0.936 33 H 0.030 0.970 34 H 0.032 0.968 35 H 0.068 0.932 36 H 0.090 0.910 37 H 0.100 0.900 38 H 0.082 0.918 39 H 0.115 0.885 40 H 0.100 0.900 41 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -0.309 3.388 -18.141 18.457 hybrid contribution 0.208 0.453 0.947 1.070 sum -0.101 3.840 -17.195 17.619 Atomic orbital electron populations 1.22732 0.82088 1.02600 0.99354 1.88066 1.18401 1.26615 1.95130 1.22450 0.92100 0.85418 0.99456 1.22213 0.92332 0.91291 0.93708 1.62007 1.14081 1.43564 1.02737 1.22771 0.88186 1.00327 1.01972 1.22283 1.00137 0.97582 0.86756 1.21596 1.00409 0.96529 0.95369 1.19073 0.96663 0.96365 0.89460 1.21311 1.45167 0.96884 0.91925 0.92620 1.25030 0.95433 0.95544 0.98558 1.69980 1.47390 1.21334 1.15083 0.86553 0.77669 0.82617 0.81287 1.19703 1.21095 1.21059 1.23540 0.98935 0.97863 1.00412 1.23343 0.97878 0.99084 0.99259 1.23074 0.97292 1.00289 0.95789 0.94184 0.94882 0.89763 0.93351 0.93414 0.95414 0.91068 0.91293 0.95452 0.91513 0.92514 0.93629 0.96965 0.96764 0.93179 0.91011 0.89985 0.91782 0.88513 0.90018 0.90486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 11.01 101.05 1.11 1.46 16 2 O -0.36 -5.57 10.47 -35.23 -0.37 -5.94 16 3 C 0.08 1.11 4.88 37.16 0.18 1.30 16 4 C 0.10 1.29 0.91 -130.79 -0.12 1.17 16 5 N -0.50 -8.08 4.50 -226.22 -1.02 -9.10 16 6 C 0.02 0.22 7.51 60.06 0.45 0.67 16 7 C 0.06 1.10 4.48 -3.82 -0.02 1.08 16 8 C -0.10 -2.23 5.19 -26.73 -0.14 -2.36 16 9 C 0.02 0.59 4.97 -27.88 -0.14 0.45 16 10 C -0.51 -15.06 9.11 -34.44 -0.31 -15.37 16 11 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 12 C 0.05 1.61 5.46 -17.82 -0.10 1.52 16 13 N -0.90 -27.59 13.29 55.43 0.74 -26.85 16 14 Si 0.89 22.16 29.54 -169.99 -5.02 17.14 16 15 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 16 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 17 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 18 C -0.17 -1.98 6.71 -25.92 -0.17 -2.15 16 19 C -0.16 -1.66 7.28 -25.88 -0.19 -1.85 16 20 C -0.13 -1.44 6.83 -25.88 -0.18 -1.61 16 21 H 0.04 0.47 8.14 -51.93 -0.42 0.04 16 22 H 0.03 0.32 8.14 -51.93 -0.42 -0.10 16 23 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 24 H 0.05 0.67 7.03 -51.93 -0.37 0.31 16 25 H 0.05 0.53 7.95 -51.93 -0.41 0.12 16 26 H 0.03 0.38 6.13 -51.93 -0.32 0.06 16 27 H 0.07 1.08 6.83 -51.92 -0.35 0.73 16 28 H 0.07 0.85 5.27 -51.93 -0.27 0.58 16 29 H 0.03 0.51 7.10 -51.93 -0.37 0.14 16 30 H 0.07 1.27 6.36 -51.93 -0.33 0.94 16 31 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 32 H 0.04 0.99 6.82 -51.93 -0.35 0.63 16 33 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 34 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 36 H 0.07 0.94 6.83 -51.93 -0.35 0.59 16 37 H 0.08 0.84 8.10 -51.93 -0.42 0.42 16 38 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.10 1.03 4.67 -51.93 -0.24 0.79 16 40 H 0.08 0.82 7.96 -51.93 -0.41 0.40 16 41 H 0.08 0.92 6.95 -51.93 -0.36 0.56 16 LS Contribution 314.49 15.07 4.74 4.74 Total: -1.00 -31.59 314.49 -7.62 -39.21 By element: Atomic # 1 Polarization: 3.58 SS G_CDS: -7.07 Total: -3.49 kcal Atomic # 6 Polarization: -16.09 SS G_CDS: 0.38 Total: -15.71 kcal Atomic # 7 Polarization: -35.67 SS G_CDS: -0.28 Total: -35.95 kcal Atomic # 8 Polarization: -5.57 SS G_CDS: -0.37 Total: -5.94 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.14 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -31.59 -7.62 -39.21 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000880186605.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.237 kcal (2) G-P(sol) polarization free energy of solvation -31.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.210 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds