Wall clock time and date at job start Thu Apr 9 2020 12:16:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42895 * 114.00437 * 2 1 4 4 C 1.52997 * 109.47356 * 210.00230 * 3 2 1 5 5 C 1.53006 * 109.46974 * 299.99722 * 4 3 2 6 6 C 1.52999 * 109.47000 * 300.00410 * 5 4 3 7 7 C 1.53006 * 109.46626 * 180.02562 * 6 5 4 8 8 N 1.46905 * 109.46684 * 174.99707 * 7 6 5 9 9 C 1.46903 * 110.99390 * 179.97438 * 8 7 6 10 10 C 1.53005 * 109.46692 * 180.02562 * 9 8 7 11 11 C 1.50703 * 109.47106 * 180.02562 * 10 9 8 12 12 H 1.07993 * 119.99640 * 0.02562 * 11 10 9 13 13 C 1.37875 * 120.00023 * 179.97438 * 11 10 9 14 14 N 1.31520 * 119.99798 * 0.02562 * 13 11 10 15 15 Si 1.86797 * 120.00027 * 179.97438 * 13 11 10 16 16 H 1.48506 * 109.47044 * 60.00262 * 15 13 11 17 17 H 1.48495 * 109.47074 * 180.02562 * 15 13 11 18 18 H 1.48498 * 109.47383 * 300.00554 * 15 13 11 19 19 C 1.52997 * 109.47592 * 59.99968 * 6 5 4 20 20 C 1.52996 * 109.46975 * 300.00042 * 19 6 5 21 21 H 1.09002 * 109.47308 * 179.97438 * 1 2 3 22 22 H 1.09004 * 109.46784 * 299.99719 * 1 2 3 23 23 H 1.09004 * 109.46897 * 59.99809 * 1 2 3 24 24 H 1.09002 * 109.47063 * 330.00242 * 3 2 1 25 25 H 1.09000 * 109.47140 * 180.02562 * 4 3 2 26 26 H 1.09001 * 109.46922 * 59.99816 * 4 3 2 27 27 H 1.08993 * 109.46765 * 179.97438 * 5 4 3 28 28 H 1.09000 * 109.46866 * 60.00225 * 5 4 3 29 29 H 1.09000 * 109.47160 * 299.99635 * 6 5 4 30 30 H 1.08995 * 109.46794 * 294.99833 * 7 6 5 31 31 H 1.09000 * 109.47314 * 54.99967 * 7 6 5 32 32 H 1.00901 * 110.99779 * 56.04682 * 8 7 6 33 33 H 1.08994 * 109.47436 * 299.99878 * 9 8 7 34 34 H 1.08999 * 109.47287 * 60.00669 * 9 8 7 35 35 H 1.09002 * 109.46909 * 299.99797 * 10 9 8 36 36 H 1.08996 * 109.47388 * 59.99855 * 10 9 8 37 37 H 0.97000 * 119.99266 * 179.97438 * 14 13 11 38 38 H 1.09000 * 109.47140 * 59.99654 * 19 6 5 39 39 H 1.09001 * 109.47375 * 179.97438 * 19 6 5 40 40 H 1.09004 * 109.47368 * 299.99783 * 20 19 6 41 41 H 1.08996 * 109.47261 * 180.02562 * 20 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.3589 1.2631 -0.7213 5 6 4.2928 0.2891 0.0000 6 6 4.5001 0.7549 1.4425 7 6 5.4345 -0.2188 2.1635 8 7 5.7292 0.2912 3.5093 9 6 6.6253 -0.6205 4.2331 10 6 6.9082 -0.0573 5.6273 11 6 7.8280 -0.9922 6.3696 12 1 8.1763 -1.8972 5.8943 13 6 8.2257 -0.6915 7.6551 14 7 7.8019 0.4109 8.2336 15 14 9.3652 -1.8507 8.5754 16 1 10.6412 -1.9875 7.8280 17 1 9.6399 -1.3040 9.9285 18 1 8.7203 -3.1823 8.7016 19 6 3.1515 0.7972 2.1638 20 6 2.2177 1.7712 1.4425 21 1 -0.3634 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8901 23 1 -0.3633 0.5139 -0.8900 24 1 1.3451 1.9993 -0.5138 25 1 3.8025 2.2588 -0.7209 26 1 3.2111 0.9312 -1.7489 27 1 5.2533 0.2587 -0.5141 28 1 3.8494 -0.7067 0.0000 29 1 4.9435 1.7507 1.4425 30 1 4.9531 -1.1936 2.2417 31 1 6.3627 -0.3161 1.6005 32 1 4.8795 0.4511 4.0295 33 1 6.1519 -1.5979 4.3256 34 1 7.5619 -0.7209 3.6845 35 1 7.3815 0.9202 5.5350 36 1 5.9716 0.0428 6.1756 37 1 8.0814 0.6222 9.1381 38 1 2.7081 -0.1986 2.1637 39 1 3.2993 1.1287 3.1916 40 1 2.6611 2.7670 1.4425 41 1 1.2571 1.8017 1.9566 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000893515333.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:16:12 Heat of formation + Delta-G solvation = -80.326213 kcal Electronic energy + Delta-G solvation = -17520.000264 eV Core-core repulsion = 14819.410232 eV Total energy + Delta-G solvation = -2700.590032 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.60173 -37.03002 -35.10224 -32.92939 -31.01540 -30.83235 -28.60004 -26.71249 -25.00684 -23.40636 -22.54035 -20.85824 -20.40586 -19.54761 -16.48633 -16.27002 -16.09224 -15.51500 -15.28603 -14.43600 -14.23856 -14.04105 -13.79021 -13.38507 -12.89187 -12.84514 -12.47262 -12.24220 -12.13736 -11.83582 -11.41623 -11.26744 -11.11402 -10.94268 -10.86467 -10.65358 -10.41505 -10.30783 -10.02298 -9.90424 -9.55443 -9.26472 -9.10530 -8.31186 -7.70870 -5.96006 -3.98416 3.36123 3.40067 3.42790 3.62445 4.46805 4.61052 4.64919 4.73276 4.88678 5.06847 5.11497 5.18268 5.30008 5.32518 5.39704 5.43346 5.46164 5.50363 5.55328 5.74071 5.83892 5.90739 5.96801 6.10763 6.16832 6.20973 6.28389 6.41905 6.42748 6.50789 6.65546 7.04727 7.06150 7.56994 7.78965 7.89206 8.04814 8.14545 8.48592 9.08806 9.65022 11.15479 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.049904 B = 0.003580 C = 0.003524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 560.940150 B = 7819.991695 C = 7944.051914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.379 6.379 3 C 0.089 3.911 4 C -0.113 4.113 5 C -0.109 4.109 6 C -0.084 4.084 7 C 0.064 3.936 8 N -0.692 5.692 9 C 0.065 3.935 10 C 0.025 3.975 11 C -0.522 4.522 12 H 0.054 0.946 13 C 0.057 3.943 14 N -0.894 5.894 15 Si 0.893 3.107 16 H -0.277 1.277 17 H -0.287 1.287 18 H -0.277 1.277 19 C -0.110 4.110 20 C -0.139 4.139 21 H 0.083 0.917 22 H 0.039 0.961 23 H 0.037 0.963 24 H 0.055 0.945 25 H 0.074 0.926 26 H 0.064 0.936 27 H 0.060 0.940 28 H 0.068 0.932 29 H 0.076 0.924 30 H 0.022 0.978 31 H 0.065 0.935 32 H 0.334 0.666 33 H 0.014 0.986 34 H 0.057 0.943 35 H 0.025 0.975 36 H 0.013 0.987 37 H 0.261 0.739 38 H 0.065 0.935 39 H 0.065 0.935 40 H 0.071 0.929 41 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.710 2.141 -17.925 22.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.297 6.297 3 C 0.031 3.969 4 C -0.151 4.151 5 C -0.147 4.147 6 C -0.103 4.103 7 C -0.066 4.066 8 N -0.324 5.324 9 C -0.063 4.063 10 C -0.012 4.012 11 C -0.561 4.561 12 H 0.072 0.928 13 C -0.144 4.144 14 N -0.533 5.533 15 Si 0.721 3.279 16 H -0.202 1.202 17 H -0.213 1.213 18 H -0.203 1.203 19 C -0.148 4.148 20 C -0.177 4.177 21 H 0.101 0.899 22 H 0.058 0.942 23 H 0.056 0.944 24 H 0.073 0.927 25 H 0.093 0.907 26 H 0.083 0.917 27 H 0.079 0.921 28 H 0.087 0.913 29 H 0.094 0.906 30 H 0.040 0.960 31 H 0.084 0.916 32 H 0.152 0.848 33 H 0.032 0.968 34 H 0.075 0.925 35 H 0.043 0.957 36 H 0.031 0.969 37 H 0.070 0.930 38 H 0.083 0.917 39 H 0.084 0.916 40 H 0.090 0.910 41 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -13.065 2.480 -17.966 22.352 hybrid contribution -0.238 -1.098 0.841 1.404 sum -13.304 1.381 -17.125 21.729 Atomic orbital electron populations 1.22756 0.81736 1.02505 0.99624 1.87946 1.18950 1.27839 1.95009 1.22149 0.94707 0.84364 0.95691 1.21617 0.94061 1.00536 0.98880 1.21454 0.98663 0.99527 0.95077 1.21167 0.95016 1.00104 0.93963 1.21946 0.98043 0.95228 0.91397 1.60642 1.19656 1.49136 1.02937 1.22147 0.94666 0.92444 0.97058 1.19063 0.96618 0.96849 0.88667 1.21164 1.28878 1.07016 0.99001 0.92821 1.25006 0.96436 0.95334 0.97614 1.69971 1.44985 1.24274 1.14110 0.86643 0.81306 0.81067 0.78879 1.20222 1.21281 1.20301 1.21478 0.94694 0.99707 0.98922 1.21999 1.00067 0.99793 0.95812 0.89885 0.94196 0.94428 0.92669 0.90744 0.91684 0.92117 0.91316 0.90589 0.96027 0.91645 0.84763 0.96819 0.92464 0.95687 0.96894 0.92971 0.91659 0.91620 0.91017 0.92186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 10.82 101.05 1.09 1.34 16 2 O -0.38 -4.14 9.00 -35.23 -0.32 -4.46 16 3 C 0.09 0.86 2.92 -26.73 -0.08 0.78 16 4 C -0.11 -1.08 5.66 -26.73 -0.15 -1.23 16 5 C -0.11 -1.22 5.06 -26.73 -0.14 -1.35 16 6 C -0.08 -1.07 2.40 -90.62 -0.22 -1.29 16 7 C 0.06 0.98 5.15 -3.82 -0.02 0.96 16 8 N -0.69 -12.99 6.50 -113.77 -0.74 -13.73 16 9 C 0.07 1.44 5.62 -3.82 -0.02 1.42 16 10 C 0.03 0.69 5.23 -27.88 -0.15 0.54 16 11 C -0.52 -15.22 9.11 -34.44 -0.31 -15.54 16 12 H 0.05 1.51 7.74 -52.49 -0.41 1.11 16 13 C 0.06 1.68 5.46 -17.82 -0.10 1.59 16 14 N -0.89 -27.44 13.29 55.43 0.74 -26.71 16 15 Si 0.89 22.05 29.54 -169.99 -5.02 17.03 16 16 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 17 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 18 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 19 C -0.11 -1.36 4.83 -26.73 -0.13 -1.49 16 20 C -0.14 -1.43 5.63 -26.73 -0.15 -1.58 16 21 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 22 H 0.04 0.30 7.87 -51.93 -0.41 -0.11 16 23 H 0.04 0.25 8.09 -51.93 -0.42 -0.17 16 24 H 0.06 0.45 7.79 -51.93 -0.40 0.05 16 25 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.07 0.84 7.68 -51.93 -0.40 0.44 16 29 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 30 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 32 H 0.33 6.09 6.98 -39.29 -0.27 5.81 16 33 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 34 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 35 H 0.02 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 37 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 38 H 0.06 0.87 7.68 -51.93 -0.40 0.47 16 39 H 0.07 0.87 6.68 -51.93 -0.35 0.52 16 40 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 41 H 0.06 0.58 7.87 -51.93 -0.41 0.18 16 LS Contribution 321.92 15.07 4.85 4.85 Total: -1.00 -30.95 321.92 -8.53 -39.48 By element: Atomic # 1 Polarization: 7.06 SS G_CDS: -7.68 Total: -0.62 kcal Atomic # 6 Polarization: -15.48 SS G_CDS: -0.37 Total: -15.85 kcal Atomic # 7 Polarization: -40.44 SS G_CDS: 0.00 Total: -40.44 kcal Atomic # 8 Polarization: -4.14 SS G_CDS: -0.32 Total: -4.46 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -30.95 -8.53 -39.48 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893515333.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.849 kcal (2) G-P(sol) polarization free energy of solvation -30.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.478 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds