Wall clock time and date at job start Thu Apr 9 2020 12:16:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42898 * 109.47305 * 2 1 4 4 C 1.42895 * 114.00052 * 180.02562 * 3 2 1 5 5 H 1.09000 * 109.47303 * 30.00297 * 4 3 2 6 6 C 1.53003 * 109.46971 * 270.00170 * 4 3 2 7 7 C 1.53002 * 109.47078 * 299.99583 * 6 4 3 8 8 C 1.52994 * 109.47510 * 300.00377 * 7 6 4 9 9 C 1.53003 * 109.47258 * 59.99733 * 8 7 6 10 10 H 1.08999 * 109.46803 * 59.99659 * 9 8 7 11 11 N 1.46902 * 109.47211 * 180.02562 * 9 8 7 12 12 C 1.46896 * 110.99936 * 274.99934 * 11 9 8 13 13 C 1.53001 * 109.47230 * 180.02562 * 12 11 9 14 14 C 1.50697 * 109.46995 * 180.02562 * 13 12 11 15 15 H 1.07991 * 120.00449 * 359.72153 * 14 13 12 16 16 C 1.37885 * 119.99686 * 179.97438 * 14 13 12 17 17 N 1.31516 * 119.99913 * 359.72095 * 16 14 13 18 18 Si 1.86798 * 119.99766 * 179.72528 * 16 14 13 19 19 H 1.48498 * 109.47416 * 59.99812 * 18 16 14 20 20 H 1.48508 * 109.46609 * 180.02562 * 18 16 14 21 21 H 1.48503 * 109.46903 * 299.99397 * 18 16 14 22 22 C 1.52998 * 109.47263 * 300.00236 * 9 8 7 23 23 H 1.08998 * 109.47002 * 299.99944 * 1 2 3 24 24 H 1.08998 * 109.47142 * 60.00260 * 1 2 3 25 25 H 1.09000 * 109.47071 * 179.97438 * 1 2 3 26 26 H 1.09005 * 109.46596 * 240.00145 * 2 1 3 27 27 H 1.08999 * 109.47215 * 120.00701 * 2 1 3 28 28 H 1.08992 * 109.47119 * 59.99938 * 6 4 3 29 29 H 1.09007 * 109.46578 * 180.02562 * 6 4 3 30 30 H 1.09004 * 109.46272 * 60.00420 * 7 6 4 31 31 H 1.08999 * 109.46995 * 179.97438 * 7 6 4 32 32 H 1.08997 * 109.46982 * 299.99863 * 8 7 6 33 33 H 1.09000 * 109.46953 * 179.97438 * 8 7 6 34 34 H 1.00895 * 110.99595 * 38.95482 * 11 9 8 35 35 H 1.08998 * 109.47372 * 60.00009 * 12 11 9 36 36 H 1.09006 * 109.47513 * 300.00180 * 12 11 9 37 37 H 1.08998 * 109.47065 * 59.99662 * 13 12 11 38 38 H 1.09001 * 109.46892 * 299.99926 * 13 12 11 39 39 H 0.97000 * 119.99651 * 180.02562 * 17 16 14 40 40 H 1.08996 * 109.47491 * 179.97438 * 22 9 8 41 41 H 1.09010 * 109.47010 * 300.00134 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4309 1.4600 -0.0006 5 1 3.8631 0.6016 -0.5148 6 6 3.9399 1.5000 1.4417 7 6 3.3332 2.7051 2.1634 8 6 3.7427 3.9908 1.4423 9 6 3.2337 3.9508 -0.0001 10 1 2.1471 3.8646 0.0004 11 7 3.6273 5.1850 -0.6927 12 6 2.6564 6.2594 -0.4465 13 6 3.0990 7.5255 -1.1828 14 6 2.1032 8.6279 -0.9297 15 1 1.2386 8.4427 -0.3097 16 6 2.2933 9.8715 -1.4939 17 7 3.3466 10.0972 -2.2485 18 14 1.0550 11.2358 -1.1864 19 1 0.9737 11.5115 0.2705 20 1 1.4854 12.4650 -1.9001 21 1 -0.2788 10.8154 -1.6859 22 6 3.8403 2.7458 -0.7218 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8933 -0.5138 -0.8901 27 1 1.8934 -0.5139 0.8899 28 1 3.6481 0.5841 1.9555 29 1 5.0265 1.5865 1.4412 30 1 2.2466 2.6189 2.1638 31 1 3.6955 2.7333 3.1911 32 1 4.8292 4.0768 1.4418 33 1 3.3100 4.8491 1.9562 34 1 4.5573 5.4694 -0.4240 35 1 2.6013 6.4613 0.6232 36 1 1.6753 5.9528 -0.8092 37 1 3.1537 7.3233 -2.2525 38 1 4.0801 7.8323 -0.8204 39 1 3.4805 10.9722 -2.6452 40 1 3.4774 2.7170 -1.7492 41 1 4.9270 2.8318 -0.7222 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000902950774.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:16:30 Heat of formation + Delta-G solvation = -79.404576 kcal Electronic energy + Delta-G solvation = -17750.927281 eV Core-core repulsion = 15050.377214 eV Total energy + Delta-G solvation = -2700.550066 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.51045 -36.96531 -34.59457 -32.75118 -31.47344 -30.31510 -29.37228 -27.38758 -23.97555 -22.95804 -22.42534 -21.43040 -20.57846 -19.54265 -16.52640 -16.25382 -15.96258 -15.53050 -14.83040 -14.44133 -14.37222 -13.78251 -13.69468 -13.05095 -12.85570 -12.79120 -12.44796 -12.13417 -11.99671 -11.78555 -11.73273 -11.31259 -11.05795 -10.96382 -10.85119 -10.76652 -10.53982 -10.33026 -10.08230 -9.90187 -9.47954 -9.24662 -9.07610 -8.29864 -7.64811 -5.94650 -3.96840 3.37080 3.40974 3.43781 3.63937 4.46941 4.64081 4.74384 4.80486 4.92250 5.06720 5.11428 5.21217 5.26236 5.40822 5.41230 5.45523 5.51150 5.55374 5.66596 5.75333 5.80178 5.88569 5.97436 6.04318 6.13010 6.23898 6.27183 6.40953 6.47426 6.56820 6.62474 7.07631 7.24961 7.60442 7.81311 7.91460 8.07676 8.16932 8.50540 9.10455 9.66505 11.16852 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.033146 B = 0.004249 C = 0.004055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 844.535939 B = 6587.508424 C = 6903.357177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.056 3.944 3 O -0.374 6.374 4 C 0.092 3.908 5 H 0.057 0.943 6 C -0.139 4.139 7 C -0.108 4.108 8 C -0.148 4.148 9 C 0.092 3.908 10 H 0.081 0.919 11 N -0.689 5.689 12 C 0.068 3.932 13 C 0.025 3.975 14 C -0.521 4.521 15 H 0.053 0.947 16 C 0.058 3.942 17 N -0.895 5.895 18 Si 0.892 3.108 19 H -0.277 1.277 20 H -0.287 1.287 21 H -0.277 1.277 22 C -0.102 4.102 23 H 0.062 0.938 24 H 0.064 0.936 25 H 0.066 0.934 26 H 0.044 0.956 27 H 0.043 0.957 28 H 0.058 0.942 29 H 0.069 0.931 30 H 0.068 0.932 31 H 0.054 0.946 32 H 0.058 0.942 33 H 0.062 0.938 34 H 0.334 0.666 35 H 0.014 0.986 36 H 0.057 0.943 37 H 0.024 0.976 38 H 0.013 0.987 39 H 0.260 0.740 40 H 0.074 0.926 41 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.173 -20.742 6.753 21.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.020 4.020 3 O -0.293 6.293 4 C 0.033 3.967 5 H 0.075 0.925 6 C -0.177 4.177 7 C -0.146 4.146 8 C -0.188 4.188 9 C -0.019 4.019 10 H 0.099 0.901 11 N -0.318 5.318 12 C -0.061 4.061 13 C -0.012 4.012 14 C -0.560 4.560 15 H 0.072 0.928 16 C -0.144 4.144 17 N -0.534 5.534 18 Si 0.720 3.280 19 H -0.203 1.203 20 H -0.213 1.213 21 H -0.202 1.202 22 C -0.140 4.140 23 H 0.081 0.919 24 H 0.083 0.917 25 H 0.085 0.915 26 H 0.063 0.937 27 H 0.061 0.939 28 H 0.076 0.924 29 H 0.087 0.913 30 H 0.086 0.914 31 H 0.073 0.927 32 H 0.077 0.923 33 H 0.081 0.919 34 H 0.151 0.849 35 H 0.033 0.967 36 H 0.075 0.925 37 H 0.043 0.957 38 H 0.031 0.969 39 H 0.070 0.930 40 H 0.093 0.907 41 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -0.158 -20.606 6.026 21.470 hybrid contribution -0.219 0.790 1.136 1.401 sum -0.377 -19.817 7.162 21.074 Atomic orbital electron populations 1.21735 0.93958 1.01874 1.03310 1.22455 0.95522 0.84554 0.99499 1.87995 1.20937 1.25437 1.94951 1.22127 0.81218 0.98197 0.95132 0.92522 1.22025 1.00572 0.98700 0.96421 1.21340 1.01345 0.94003 0.97942 1.22289 1.00769 0.97745 0.97958 1.21452 1.00276 0.90322 0.89811 0.90077 1.60676 1.06087 1.04511 1.60480 1.22149 0.94642 0.91824 0.97446 1.19068 0.96309 0.89659 0.96209 1.21162 1.08504 0.95871 1.30418 0.92844 1.25001 0.95534 0.98636 0.95184 1.69968 1.27678 1.22781 1.32947 0.86656 0.81700 0.81331 0.78279 1.20314 1.21291 1.20228 1.21609 1.00346 0.92251 0.99787 0.91903 0.91721 0.91485 0.93728 0.93886 0.92361 0.91254 0.91373 0.92701 0.92282 0.91946 0.84908 0.96749 0.92477 0.95735 0.96893 0.92992 0.90738 0.91017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.32 10.28 37.16 0.38 -0.94 16 2 C 0.06 0.54 6.47 37.16 0.24 0.78 16 3 O -0.37 -4.69 8.64 -35.23 -0.30 -5.00 16 4 C 0.09 1.03 2.92 -26.73 -0.08 0.96 16 5 H 0.06 0.55 7.79 -51.93 -0.40 0.15 16 6 C -0.14 -1.43 5.63 -26.73 -0.15 -1.58 16 7 C -0.11 -1.27 5.78 -26.73 -0.15 -1.42 16 8 C -0.15 -2.03 5.17 -26.73 -0.14 -2.17 16 9 C 0.09 1.43 2.32 -67.71 -0.16 1.27 16 10 H 0.08 1.41 7.34 -51.93 -0.38 1.03 16 11 N -0.69 -12.83 6.25 -106.72 -0.67 -13.50 16 12 C 0.07 1.49 5.42 -3.83 -0.02 1.47 16 13 C 0.02 0.67 5.23 -27.88 -0.15 0.53 16 14 C -0.52 -15.20 9.11 -34.44 -0.31 -15.51 16 15 H 0.05 1.51 7.74 -52.49 -0.41 1.11 16 16 C 0.06 1.69 5.46 -17.82 -0.10 1.60 16 17 N -0.89 -27.49 13.29 55.43 0.74 -26.75 16 18 Si 0.89 22.10 29.54 -169.99 -5.02 17.08 16 19 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 20 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 21 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 22 C -0.10 -1.35 5.27 -26.73 -0.14 -1.49 16 23 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 24 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 25 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.04 0.39 8.08 -51.93 -0.42 -0.03 16 27 H 0.04 0.36 7.87 -51.93 -0.41 -0.04 16 28 H 0.06 0.54 7.87 -51.93 -0.41 0.13 16 29 H 0.07 0.65 8.14 -51.92 -0.42 0.23 16 30 H 0.07 0.87 7.68 -51.93 -0.40 0.47 16 31 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.06 0.77 8.13 -51.93 -0.42 0.34 16 33 H 0.06 0.94 7.45 -51.93 -0.39 0.55 16 34 H 0.33 5.98 8.47 -39.29 -0.33 5.65 16 35 H 0.01 0.31 7.44 -51.93 -0.39 -0.07 16 36 H 0.06 1.29 8.06 -51.93 -0.42 0.87 16 37 H 0.02 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 39 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 40 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 41 H 0.07 0.87 8.14 -51.92 -0.42 0.45 16 LS Contribution 323.60 15.07 4.88 4.88 Total: -1.00 -30.77 323.60 -8.87 -39.64 By element: Atomic # 1 Polarization: 7.88 SS G_CDS: -7.71 Total: 0.17 kcal Atomic # 6 Polarization: -15.74 SS G_CDS: -0.77 Total: -16.51 kcal Atomic # 7 Polarization: -40.32 SS G_CDS: 0.07 Total: -40.25 kcal Atomic # 8 Polarization: -4.69 SS G_CDS: -0.30 Total: -5.00 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.08 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -30.77 -8.87 -39.64 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000902950774.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.764 kcal (2) G-P(sol) polarization free energy of solvation -30.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.640 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds