Wall clock time and date at job start Thu Apr 9 2020 12:16:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42898 * 109.47305 * 2 1 4 4 C 1.42895 * 114.00052 * 180.02562 * 3 2 1 5 5 H 1.09000 * 109.47303 * 30.00297 * 4 3 2 6 6 C 1.53003 * 109.46971 * 270.00170 * 4 3 2 7 7 C 1.53002 * 109.47078 * 299.99583 * 6 4 3 8 8 C 1.52994 * 109.47510 * 300.00377 * 7 6 4 9 9 C 1.53003 * 109.47258 * 59.99733 * 8 7 6 10 10 H 1.08999 * 109.46803 * 59.99659 * 9 8 7 11 11 N 1.46902 * 109.47211 * 180.02562 * 9 8 7 12 12 C 1.46896 * 110.99936 * 274.99934 * 11 9 8 13 13 C 1.53001 * 109.47230 * 180.02562 * 12 11 9 14 14 C 1.50697 * 109.46995 * 180.02562 * 13 12 11 15 15 H 1.07991 * 120.00449 * 359.72153 * 14 13 12 16 16 C 1.37885 * 119.99686 * 179.97438 * 14 13 12 17 17 N 1.31516 * 119.99913 * 359.72095 * 16 14 13 18 18 Si 1.86798 * 119.99766 * 179.72528 * 16 14 13 19 19 H 1.48498 * 109.47416 * 59.99812 * 18 16 14 20 20 H 1.48508 * 109.46609 * 180.02562 * 18 16 14 21 21 H 1.48503 * 109.46903 * 299.99397 * 18 16 14 22 22 C 1.52998 * 109.47263 * 300.00236 * 9 8 7 23 23 H 1.08998 * 109.47002 * 299.99944 * 1 2 3 24 24 H 1.08998 * 109.47142 * 60.00260 * 1 2 3 25 25 H 1.09000 * 109.47071 * 179.97438 * 1 2 3 26 26 H 1.09005 * 109.46596 * 240.00145 * 2 1 3 27 27 H 1.08999 * 109.47215 * 120.00701 * 2 1 3 28 28 H 1.08992 * 109.47119 * 59.99938 * 6 4 3 29 29 H 1.09007 * 109.46578 * 180.02562 * 6 4 3 30 30 H 1.09004 * 109.46272 * 60.00420 * 7 6 4 31 31 H 1.08999 * 109.46995 * 179.97438 * 7 6 4 32 32 H 1.08997 * 109.46982 * 299.99863 * 8 7 6 33 33 H 1.09000 * 109.46953 * 179.97438 * 8 7 6 34 34 H 1.00895 * 110.99595 * 38.95482 * 11 9 8 35 35 H 1.08998 * 109.47372 * 60.00009 * 12 11 9 36 36 H 1.09006 * 109.47513 * 300.00180 * 12 11 9 37 37 H 1.08998 * 109.47065 * 59.99662 * 13 12 11 38 38 H 1.09001 * 109.46892 * 299.99926 * 13 12 11 39 39 H 0.97000 * 119.99651 * 180.02562 * 17 16 14 40 40 H 1.08996 * 109.47491 * 179.97438 * 22 9 8 41 41 H 1.09010 * 109.47010 * 300.00134 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4309 1.4600 -0.0006 5 1 3.8631 0.6016 -0.5148 6 6 3.9399 1.5000 1.4417 7 6 3.3332 2.7051 2.1634 8 6 3.7427 3.9908 1.4423 9 6 3.2337 3.9508 -0.0001 10 1 2.1471 3.8646 0.0004 11 7 3.6273 5.1850 -0.6927 12 6 2.6564 6.2594 -0.4465 13 6 3.0990 7.5255 -1.1828 14 6 2.1032 8.6279 -0.9297 15 1 1.2386 8.4427 -0.3097 16 6 2.2933 9.8715 -1.4939 17 7 3.3466 10.0972 -2.2485 18 14 1.0550 11.2358 -1.1864 19 1 0.9737 11.5115 0.2705 20 1 1.4854 12.4650 -1.9001 21 1 -0.2788 10.8154 -1.6859 22 6 3.8403 2.7458 -0.7218 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8933 -0.5138 -0.8901 27 1 1.8934 -0.5139 0.8899 28 1 3.6481 0.5841 1.9555 29 1 5.0265 1.5865 1.4412 30 1 2.2466 2.6189 2.1638 31 1 3.6955 2.7333 3.1911 32 1 4.8292 4.0768 1.4418 33 1 3.3100 4.8491 1.9562 34 1 4.5573 5.4694 -0.4240 35 1 2.6013 6.4613 0.6232 36 1 1.6753 5.9528 -0.8092 37 1 3.1537 7.3233 -2.2525 38 1 4.0801 7.8323 -0.8204 39 1 3.4805 10.9722 -2.6452 40 1 3.4774 2.7170 -1.7492 41 1 4.9270 2.8318 -0.7222 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000902950774.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:16:30 Heat of formation + Delta-G solvation = -98.926657 kcal Electronic energy + Delta-G solvation = -17751.773822 eV Core-core repulsion = 15050.377214 eV Total energy + Delta-G solvation = -2701.396607 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.50759 -38.13461 -36.12782 -34.68719 -32.29879 -31.92755 -30.41245 -28.95437 -25.93237 -23.71922 -23.44246 -22.65996 -22.42503 -20.61347 -18.52460 -17.44405 -16.90577 -16.53326 -16.44081 -16.13979 -15.69617 -15.01421 -14.80696 -14.44111 -14.20682 -14.01413 -13.75600 -13.35385 -13.17072 -12.98657 -12.88235 -12.73262 -12.61707 -12.44436 -12.17877 -11.98709 -11.95313 -11.71564 -11.47712 -11.35755 -11.31610 -10.87124 -10.56388 -10.31878 -9.18280 -8.20548 -6.32357 1.39574 1.43387 1.51353 2.40500 2.85002 3.12450 3.31930 3.82381 3.84994 4.05272 4.18652 4.26411 4.28447 4.39113 4.48748 4.49530 4.53983 4.61527 4.62402 4.67179 4.73505 4.80018 5.00701 5.04643 5.05410 5.07225 5.16609 5.19077 5.28382 5.30648 5.42684 5.43205 5.47693 5.68223 5.79357 6.16372 6.31252 6.45652 6.61032 6.84367 7.36717 8.91525 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.033146 B = 0.004249 C = 0.004055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 844.535939 B = 6587.508424 C = 6903.357177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.051 3.949 3 O -0.401 6.401 4 C 0.092 3.908 5 H 0.078 0.922 6 C -0.134 4.134 7 C -0.104 4.104 8 C -0.143 4.143 9 C 0.094 3.906 10 H 0.058 0.942 11 N -0.694 5.694 12 C 0.088 3.912 13 C 0.033 3.967 14 C -0.548 4.548 15 H 0.058 0.942 16 C 0.002 3.998 17 N -0.931 5.931 18 Si 0.968 3.032 19 H -0.266 1.266 20 H -0.280 1.280 21 H -0.268 1.268 22 C -0.098 4.098 23 H 0.054 0.946 24 H 0.050 0.950 25 H 0.090 0.910 26 H 0.054 0.946 27 H 0.058 0.942 28 H 0.075 0.925 29 H 0.084 0.916 30 H 0.053 0.947 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.043 0.957 34 H 0.338 0.662 35 H 0.016 0.984 36 H 0.048 0.952 37 H -0.007 1.007 38 H -0.007 1.007 39 H 0.265 0.735 40 H 0.057 0.943 41 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.010 -21.963 7.882 23.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.026 4.026 3 O -0.321 6.321 4 C 0.034 3.966 5 H 0.096 0.904 6 C -0.172 4.172 7 C -0.142 4.142 8 C -0.182 4.182 9 C -0.016 4.016 10 H 0.076 0.924 11 N -0.323 5.323 12 C -0.041 4.041 13 C -0.005 4.005 14 C -0.586 4.586 15 H 0.076 0.924 16 C -0.196 4.196 17 N -0.571 5.571 18 Si 0.792 3.208 19 H -0.191 1.191 20 H -0.205 1.205 21 H -0.192 1.192 22 C -0.136 4.136 23 H 0.073 0.927 24 H 0.069 0.931 25 H 0.109 0.891 26 H 0.072 0.928 27 H 0.077 0.923 28 H 0.094 0.906 29 H 0.102 0.898 30 H 0.072 0.928 31 H 0.088 0.912 32 H 0.089 0.911 33 H 0.062 0.938 34 H 0.156 0.844 35 H 0.034 0.966 36 H 0.067 0.933 37 H 0.012 0.988 38 H 0.011 0.989 39 H 0.073 0.927 40 H 0.076 0.924 41 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -0.321 -21.857 7.166 23.003 hybrid contribution -0.152 1.129 0.753 1.365 sum -0.473 -20.728 7.919 22.194 Atomic orbital electron populations 1.21761 0.93747 1.03082 1.02229 1.22644 0.95794 0.83451 1.00680 1.87975 1.21635 1.27394 1.95144 1.22153 0.81039 0.97521 0.95886 0.90360 1.22010 1.01270 0.98509 0.95387 1.21299 1.00637 0.93518 0.98751 1.22207 1.01209 0.98387 0.96433 1.21468 0.99214 0.89585 0.91324 0.92366 1.60610 1.05570 1.04545 1.61622 1.21731 0.94863 0.90920 0.96586 1.18914 0.95186 0.91690 0.94660 1.21582 1.09152 0.96983 1.30900 0.92397 1.25981 0.97621 1.01446 0.94581 1.70103 1.29593 1.23688 1.33725 0.85467 0.78952 0.77688 0.78721 1.19080 1.20547 1.19248 1.21573 1.00941 0.92288 0.98817 0.92705 0.93056 0.89142 0.92753 0.92341 0.90632 0.89775 0.92787 0.91155 0.91116 0.93816 0.84384 0.96555 0.93313 0.98844 0.98875 0.92667 0.92404 0.89640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.46 10.28 71.98 0.74 -1.72 16 2 C 0.05 0.87 6.47 71.98 0.47 1.34 16 3 O -0.40 -9.61 8.64 -148.98 -1.29 -10.90 16 4 C 0.09 1.88 2.92 30.60 0.09 1.97 16 5 H 0.08 1.29 7.79 -2.39 -0.02 1.27 16 6 C -0.13 -2.35 5.63 30.60 0.17 -2.18 16 7 C -0.10 -2.24 5.78 30.59 0.18 -2.07 16 8 C -0.14 -3.80 5.17 30.59 0.16 -3.64 16 9 C 0.09 2.91 2.32 44.92 0.10 3.02 16 10 H 0.06 2.08 7.34 -2.39 -0.02 2.06 16 11 N -0.69 -26.37 6.25 -491.57 -3.07 -29.44 16 12 C 0.09 4.00 5.42 86.30 0.47 4.47 16 13 C 0.03 1.84 5.23 29.85 0.16 2.00 16 14 C -0.55 -32.55 9.11 25.60 0.23 -32.32 16 15 H 0.06 3.30 7.74 -2.92 -0.02 3.28 16 16 C 0.00 0.10 5.46 84.66 0.46 0.57 16 17 N -0.93 -58.15 13.29 21.45 0.28 -57.86 16 18 Si 0.97 45.33 29.54 68.60 2.03 47.36 16 19 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 20 H -0.28 -12.72 7.11 99.48 0.71 -12.02 16 21 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 22 C -0.10 -2.50 5.27 30.59 0.16 -2.34 16 23 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 24 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 25 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 26 H 0.05 0.82 8.08 -2.38 -0.02 0.80 16 27 H 0.06 0.82 7.87 -2.39 -0.02 0.81 16 28 H 0.08 1.11 7.87 -2.39 -0.02 1.09 16 29 H 0.08 1.26 8.14 -2.38 -0.02 1.24 16 30 H 0.05 1.33 7.68 -2.38 -0.02 1.31 16 31 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 32 H 0.07 1.71 8.13 -2.39 -0.02 1.69 16 33 H 0.04 1.31 7.45 -2.39 -0.02 1.29 16 34 H 0.34 12.28 8.47 -89.70 -0.76 11.52 16 35 H 0.02 0.73 7.44 -2.39 -0.02 0.71 16 36 H 0.05 2.27 8.06 -2.38 -0.02 2.26 16 37 H -0.01 -0.42 8.14 -2.39 -0.02 -0.44 16 38 H -0.01 -0.42 8.14 -2.39 -0.02 -0.44 16 39 H 0.26 15.46 8.31 -92.71 -0.77 14.69 16 40 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 41 H 0.09 1.93 8.14 -2.38 -0.02 1.91 16 Total: -1.00 -67.03 323.60 1.55 -65.48 By element: Atomic # 1 Polarization: 16.05 SS G_CDS: 0.21 Total: 16.26 kcal Atomic # 6 Polarization: -34.28 SS G_CDS: 3.39 Total: -30.90 kcal Atomic # 7 Polarization: -84.52 SS G_CDS: -2.79 Total: -87.31 kcal Atomic # 8 Polarization: -9.61 SS G_CDS: -1.29 Total: -10.90 kcal Atomic # 14 Polarization: 45.33 SS G_CDS: 2.03 Total: 47.36 kcal Total: -67.03 1.55 -65.48 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000902950774.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.443 kcal (2) G-P(sol) polarization free energy of solvation -67.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.483 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds