Wall clock time and date at job start Thu Apr 9 2020 12:16:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38824 * 119.06937 * 2 1 4 4 C 1.38585 * 119.68921 * 179.73953 * 3 2 1 5 5 N 1.38648 * 121.05625 * 180.27659 * 4 3 2 6 6 C 1.46500 * 119.99929 * 0.02562 * 5 4 3 7 7 C 1.50702 * 109.47566 * 179.97438 * 6 5 4 8 8 H 1.07999 * 119.99444 * 0.02562 * 7 6 5 9 9 C 1.37868 * 120.00167 * 179.97438 * 7 6 5 10 10 N 1.31513 * 119.99964 * 180.02562 * 9 7 6 11 11 Si 1.86796 * 120.00228 * 0.02562 * 9 7 6 12 12 H 1.48504 * 109.47778 * 89.99523 * 11 9 7 13 13 H 1.48502 * 109.47387 * 209.99777 * 11 9 7 14 14 H 1.48507 * 109.47120 * 329.99594 * 11 9 7 15 15 C 1.41562 * 117.89069 * 0.26064 * 4 3 2 16 16 C 1.40171 * 121.36084 * 179.97438 * 15 4 3 17 17 C 1.36254 * 119.62824 * 179.97438 * 16 15 4 18 18 C 1.39272 * 120.81215 * 0.13689 * 17 16 15 19 19 C 1.36123 * 121.03299 * 359.90802 * 18 17 16 20 20 C 1.40557 * 119.75947 * 0.02562 * 19 18 17 21 21 N 1.31270 * 119.06613 * 180.31328 * 2 1 3 22 22 H 1.09003 * 109.46986 * 90.00060 * 1 2 3 23 23 H 1.09000 * 109.47816 * 210.00055 * 1 2 3 24 24 H 1.09000 * 109.47110 * 330.00385 * 1 2 3 25 25 H 1.08002 * 120.15841 * 0.02562 * 3 2 1 26 26 H 0.96998 * 120.00484 * 180.02562 * 5 4 3 27 27 H 1.09010 * 109.47461 * 300.00605 * 6 5 4 28 28 H 1.09002 * 109.47073 * 60.00225 * 6 5 4 29 29 H 0.97007 * 120.00136 * 180.02562 * 10 9 7 30 30 H 1.07994 * 120.18465 * 0.04286 * 16 15 4 31 31 H 1.07998 * 119.59480 * 180.02562 * 17 16 15 32 32 H 1.08007 * 119.48356 * 179.97438 * 18 17 16 33 33 H 1.08001 * 120.12299 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1815 1.2134 0.0000 4 6 3.5673 1.2284 0.0055 5 7 4.2696 2.4238 0.0114 6 6 3.5468 3.6980 0.0124 7 6 4.5346 4.8361 0.0198 8 1 5.5949 4.6307 0.0229 9 6 4.0849 6.1394 0.0215 10 7 4.9470 7.1325 0.0274 11 14 2.2510 6.4946 0.0154 12 1 1.7595 6.5850 1.4138 13 1 1.9983 7.7810 -0.6822 14 1 1.5372 5.4002 -0.6904 15 6 4.2430 -0.0156 0.0052 16 6 5.6429 -0.0853 0.0100 17 6 6.2568 -1.3017 0.0101 18 6 5.5104 -2.4775 0.0027 19 6 4.1496 -2.4448 -0.0030 20 6 3.4814 -1.2082 -0.0020 21 7 2.1447 -1.1474 -0.0063 22 1 -0.3633 0.0000 -1.0277 23 1 -0.3635 -0.8899 0.5138 24 1 -0.3633 0.8900 0.5138 25 1 1.6289 2.1413 0.0004 26 1 5.2396 2.4165 0.0148 27 1 2.9236 3.7631 -0.8796 28 1 2.9174 3.7580 0.9004 29 1 4.6306 8.0495 0.0290 30 1 6.2317 0.8201 0.0147 31 1 7.3355 -1.3547 0.0142 32 1 6.0192 -3.4302 0.0025 33 1 3.5853 -3.3656 -0.0084 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309687904.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:16:55 Heat of formation + Delta-G solvation = 42.673188 kcal Electronic energy + Delta-G solvation = -16349.820280 eV Core-core repulsion = 13760.613817 eV Total energy + Delta-G solvation = -2589.206463 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 242.111 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.50047 -37.07165 -36.22389 -33.04885 -31.69072 -31.32865 -29.35608 -27.50203 -27.37043 -23.59770 -22.35028 -21.91363 -20.66076 -18.12787 -17.52164 -16.68449 -15.94222 -15.01337 -14.52283 -14.49942 -14.26090 -13.88833 -13.71982 -13.39198 -13.00397 -12.78579 -12.68706 -12.39740 -11.94904 -11.35855 -11.24066 -11.11588 -11.00552 -10.86998 -10.49182 -10.10734 -9.65398 -9.04428 -8.90585 -8.59836 -8.36681 -6.95192 -6.34815 -4.38923 0.90938 1.19019 2.47168 3.13153 3.21025 3.21955 3.25816 3.92958 4.18092 4.47790 4.56997 4.93264 4.96237 4.99241 5.11328 5.30465 5.50140 5.58914 5.63926 5.77847 5.80547 5.95650 6.15966 6.22621 6.26702 6.42692 6.45478 6.59579 6.65962 6.78770 6.83815 7.13980 7.22177 7.62372 8.11333 8.28210 8.49573 8.63974 9.22526 10.77248 Molecular weight = 242.11amu Principal moments of inertia in cm(-1) A = 0.026332 B = 0.006567 C = 0.005277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1063.079179 B = 4262.529463 C = 5305.158299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.205 3.795 3 C -0.295 4.295 4 C 0.284 3.716 5 N -0.691 5.691 6 C 0.218 3.782 7 C -0.548 4.548 8 H 0.080 0.920 9 C 0.079 3.921 10 N -0.888 5.888 11 Si 0.878 3.122 12 H -0.272 1.272 13 H -0.281 1.281 14 H -0.262 1.262 15 C -0.165 4.165 16 C -0.071 4.071 17 C -0.152 4.152 18 C -0.092 4.092 19 C -0.117 4.117 20 C 0.177 3.823 21 N -0.546 5.546 22 H 0.076 0.924 23 H 0.074 0.926 24 H 0.073 0.927 25 H 0.131 0.869 26 H 0.401 0.599 27 H 0.026 0.974 28 H 0.022 0.978 29 H 0.269 0.731 30 H 0.121 0.879 31 H 0.121 0.879 32 H 0.122 0.878 33 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.280 -14.458 -0.069 14.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.057 3.943 3 C -0.323 4.323 4 C 0.163 3.837 5 N -0.311 5.311 6 C 0.095 3.905 7 C -0.586 4.586 8 H 0.098 0.902 9 C -0.125 4.125 10 N -0.524 5.524 11 Si 0.704 3.296 12 H -0.197 1.197 13 H -0.207 1.207 14 H -0.187 1.187 15 C -0.170 4.170 16 C -0.090 4.090 17 C -0.171 4.171 18 C -0.112 4.112 19 C -0.136 4.136 20 C 0.054 3.946 21 N -0.262 5.262 22 H 0.095 0.905 23 H 0.093 0.907 24 H 0.092 0.908 25 H 0.149 0.851 26 H 0.237 0.763 27 H 0.044 0.956 28 H 0.039 0.961 29 H 0.079 0.921 30 H 0.139 0.861 31 H 0.139 0.861 32 H 0.140 0.860 33 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -3.742 -14.788 -0.077 15.254 hybrid contribution 0.089 1.322 0.006 1.325 sum -3.652 -13.466 -0.070 13.952 Atomic orbital electron populations 1.20726 0.89491 1.03043 1.02814 1.20956 0.96286 0.87775 0.89290 1.21154 0.92459 0.99482 1.19239 1.18214 0.91909 0.85996 0.87601 1.45230 1.09126 1.03390 1.73356 1.19689 0.93881 0.80490 0.96398 1.20993 0.94312 0.89292 1.53965 0.90240 1.24798 0.98238 0.95750 0.93745 1.69871 1.34412 0.99448 1.48705 0.86811 0.85172 0.78559 0.79046 1.19691 1.20658 1.18679 1.18525 0.94551 0.92855 1.11112 1.20799 0.92930 0.98251 0.97066 1.20665 0.99797 0.92245 1.04413 1.20785 0.93788 0.98199 0.98425 1.20640 0.93938 0.96200 1.02819 1.18596 0.89259 0.91925 0.94818 1.67872 1.07762 1.28131 1.22428 0.90535 0.90749 0.90840 0.85085 0.76325 0.95595 0.96053 0.92052 0.86076 0.86137 0.86024 0.85359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.30 10.14 36.01 0.37 -0.94 16 2 C 0.20 3.43 6.77 -82.61 -0.56 2.87 16 3 C -0.29 -5.35 8.97 -39.24 -0.35 -5.71 16 4 C 0.28 5.36 6.70 -83.38 -0.56 4.81 16 5 N -0.69 -13.76 5.64 -59.43 -0.34 -14.09 16 6 C 0.22 4.92 3.76 -5.19 -0.02 4.90 16 7 C -0.55 -14.48 9.83 -34.44 -0.34 -14.82 16 8 H 0.08 2.24 7.84 -52.49 -0.41 1.82 16 9 C 0.08 2.15 5.47 -17.82 -0.10 2.05 16 10 N -0.89 -25.65 13.96 55.43 0.77 -24.87 16 11 Si 0.88 20.04 27.47 -169.99 -4.67 15.37 16 12 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 13 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 14 H -0.26 -5.70 6.54 56.52 0.37 -5.33 16 15 C -0.16 -2.90 5.75 -106.66 -0.61 -3.51 16 16 C -0.07 -1.08 9.52 -39.57 -0.38 -1.46 16 17 C -0.15 -1.97 9.96 -39.91 -0.40 -2.37 16 18 C -0.09 -1.14 9.94 -39.96 -0.40 -1.54 16 19 C -0.12 -1.68 9.98 -39.47 -0.39 -2.07 16 20 C 0.18 3.06 6.60 -84.89 -0.56 2.50 16 21 N -0.55 -9.67 10.23 -7.34 -0.08 -9.74 16 22 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 23 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 24 H 0.07 0.83 8.07 -51.93 -0.42 0.41 16 25 H 0.13 2.33 6.85 -52.49 -0.36 1.97 16 26 H 0.40 7.51 6.53 -40.82 -0.27 7.25 16 27 H 0.03 0.60 7.04 -51.92 -0.37 0.23 16 28 H 0.02 0.49 7.41 -51.93 -0.39 0.10 16 29 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16 30 H 0.12 1.70 6.52 -52.49 -0.34 1.36 16 31 H 0.12 1.24 8.06 -52.49 -0.42 0.82 16 32 H 0.12 1.11 8.06 -52.48 -0.42 0.69 16 33 H 0.13 1.62 8.06 -52.49 -0.42 1.19 16 LS Contribution 280.47 15.07 4.23 4.23 Total: -1.00 -29.54 280.47 -8.21 -37.75 By element: Atomic # 1 Polarization: 10.48 SS G_CDS: -3.83 Total: 6.65 kcal Atomic # 6 Polarization: -10.99 SS G_CDS: -4.30 Total: -15.29 kcal Atomic # 7 Polarization: -49.07 SS G_CDS: 0.36 Total: -48.71 kcal Atomic # 14 Polarization: 20.04 SS G_CDS: -4.67 Total: 15.37 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -29.54 -8.21 -37.75 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309687904.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.422 kcal (2) G-P(sol) polarization free energy of solvation -29.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.749 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds