Wall clock time and date at job start Thu Apr 9 2020 12:17:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.30502 * 125.65006 * 2 1 4 4 C 1.34130 * 109.25805 * 180.29194 * 3 2 1 5 5 C 1.34674 * 108.01742 * 359.73232 * 4 3 2 6 6 N 1.35042 * 125.65326 * 179.82971 * 2 1 3 7 7 C 1.46505 * 126.39434 * 359.97095 * 6 2 1 8 8 C 1.50694 * 109.47389 * 272.71074 * 7 6 2 9 9 C 1.38630 * 119.75300 * 96.27096 * 8 7 6 10 10 C 1.37616 * 120.25154 * 179.97438 * 9 8 7 11 11 C 1.40710 * 119.74813 * 0.02562 * 10 9 8 12 12 C 1.41391 * 120.24897 * 179.97438 * 11 10 9 13 13 H 1.07997 * 119.99488 * 337.10607 * 12 11 10 14 14 C 1.39941 * 120.00403 * 157.10695 * 12 11 10 15 15 N 1.30832 * 119.99804 * 340.74468 * 14 12 11 16 16 Si 1.86795 * 120.00281 * 160.74558 * 14 12 11 17 17 H 1.48499 * 109.47076 * 0.02562 * 16 14 12 18 18 H 1.48502 * 109.47071 * 119.99893 * 16 14 12 19 19 H 1.48498 * 109.47304 * 239.99809 * 16 14 12 20 20 C 1.40719 * 119.50713 * 0.25616 * 11 10 9 21 21 C 1.37623 * 119.74478 * 359.47199 * 20 11 10 22 22 H 1.09001 * 109.47145 * 273.36103 * 1 2 3 23 23 H 1.08999 * 109.47180 * 33.36606 * 1 2 3 24 24 H 1.09002 * 109.47047 * 153.36326 * 1 2 3 25 25 H 1.07994 * 125.99221 * 179.72563 * 4 3 2 26 26 H 1.07998 * 126.58521 * 179.97438 * 5 4 3 27 27 H 1.09001 * 109.46587 * 152.70904 * 7 6 2 28 28 H 1.08995 * 109.46804 * 32.71533 * 7 6 2 29 29 H 1.08004 * 119.87400 * 359.97438 * 9 8 7 30 30 H 1.08007 * 120.12651 * 180.02562 * 10 9 8 31 31 H 0.97002 * 120.00105 * 179.97438 * 15 14 12 32 32 H 1.08002 * 120.12476 * 179.72307 * 20 11 10 33 33 H 1.08000 * 119.87300 * 180.27362 * 21 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2676 1.0604 0.0000 4 6 3.5543 0.6819 -0.0065 5 6 3.5925 -0.6643 -0.0046 6 7 2.2941 -1.0973 0.0033 7 6 1.8425 -2.4910 0.0080 8 6 1.6243 -2.9436 1.4287 9 6 0.3516 -2.9007 1.9766 10 6 0.1406 -3.3120 3.2728 11 6 1.2228 -3.7768 4.0428 12 6 1.0181 -4.2015 5.3758 13 1 0.1621 -3.8463 5.9302 14 6 1.9247 -5.0819 5.9767 15 7 2.7272 -5.8015 5.2351 16 14 1.9893 -5.2299 7.8377 17 1 0.9865 -4.3164 8.4419 18 1 1.6860 -6.6286 8.2339 19 1 3.3461 -4.8628 8.3168 20 6 2.5113 -3.8103 3.4782 21 6 2.6980 -3.3994 2.1780 22 1 -0.3633 0.0602 1.0259 23 1 -0.3633 0.8583 -0.5652 24 1 -0.3633 -0.9186 -0.4607 25 1 4.4097 1.3411 -0.0122 26 1 4.4776 -1.2831 -0.0089 27 1 2.5992 -3.1196 -0.4615 28 1 0.9078 -2.5719 -0.5468 29 1 -0.4775 -2.5432 1.3840 30 1 -0.8519 -3.2782 3.6976 31 1 3.3559 -6.4116 5.6517 32 1 3.3498 -4.1610 4.0616 33 1 3.6853 -3.4284 1.7412 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336272368.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:17:08 Heat of formation + Delta-G solvation = 53.373557 kcal Electronic energy + Delta-G solvation = -16478.910431 eV Core-core repulsion = 13890.167970 eV Total energy + Delta-G solvation = -2588.742460 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 242.111 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.89219 -39.50240 -36.18838 -34.68297 -32.56452 -31.82934 -31.15969 -28.67657 -27.59519 -25.62227 -23.07807 -22.23923 -21.97696 -20.45757 -19.29429 -17.88584 -17.29229 -16.79838 -15.86316 -15.67337 -15.42347 -15.08602 -14.63068 -14.35987 -13.90893 -13.87215 -13.58611 -13.36348 -13.25919 -13.08265 -12.87933 -12.74037 -12.42399 -12.26430 -11.62973 -11.33530 -11.06142 -10.89576 -10.41552 -9.43101 -9.33573 -9.16975 -8.72354 -6.40538 0.77844 1.11159 1.25785 1.35520 1.44275 1.50559 2.14071 2.17592 2.26118 2.70909 3.68262 3.72212 3.91555 4.09094 4.18324 4.43243 4.44660 4.53609 4.59150 4.65636 4.77901 4.95928 4.99910 5.08147 5.09453 5.28166 5.38741 5.52894 5.64627 5.88043 5.95049 6.04967 6.13345 6.32280 6.41829 6.64308 6.87672 6.97038 7.25239 8.24339 Molecular weight = 242.11amu Principal moments of inertia in cm(-1) A = 0.037614 B = 0.005518 C = 0.005339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 744.233581 B = 5073.281620 C = 5243.129088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C 0.191 3.809 3 N -0.538 5.538 4 C -0.058 4.058 5 C -0.061 4.061 6 N -0.443 5.443 7 C 0.168 3.832 8 C -0.238 4.238 9 C -0.065 4.065 10 C -0.249 4.249 11 C 0.083 3.917 12 C -0.497 4.497 13 H 0.075 0.925 14 C 0.037 3.963 15 N -0.818 5.818 16 Si 0.980 3.020 17 H -0.259 1.259 18 H -0.263 1.263 19 H -0.265 1.265 20 C -0.198 4.198 21 C -0.083 4.083 22 H 0.075 0.925 23 H 0.095 0.905 24 H 0.092 0.908 25 H 0.182 0.818 26 H 0.190 0.810 27 H 0.103 0.897 28 H 0.111 0.889 29 H 0.126 0.874 30 H 0.098 0.902 31 H 0.290 0.710 32 H 0.098 0.902 33 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.445 3.481 -7.522 8.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.072 4.072 3 N -0.259 5.259 4 C -0.206 4.206 5 C -0.195 4.195 6 N -0.125 5.125 7 C 0.048 3.952 8 C -0.240 4.240 9 C -0.084 4.084 10 C -0.268 4.268 11 C 0.081 3.919 12 C -0.526 4.526 13 H 0.093 0.907 14 C -0.179 4.179 15 N -0.443 5.443 16 Si 0.800 3.200 17 H -0.183 1.183 18 H -0.187 1.187 19 H -0.189 1.189 20 C -0.218 4.218 21 C -0.102 4.102 22 H 0.093 0.907 23 H 0.114 0.886 24 H 0.110 0.890 25 H 0.200 0.800 26 H 0.207 0.793 27 H 0.121 0.879 28 H 0.129 0.871 29 H 0.144 0.856 30 H 0.116 0.884 31 H 0.101 0.899 32 H 0.116 0.884 33 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -0.603 3.930 -7.538 8.522 hybrid contribution 0.708 -1.128 1.127 1.745 sum 0.105 2.802 -6.410 6.997 Atomic orbital electron populations 1.20280 0.83531 1.04793 1.03729 1.23774 0.96929 0.81581 1.04893 1.70145 1.03288 1.29809 1.22631 1.22590 0.94878 0.93660 1.09439 1.23075 0.88149 0.96880 1.11375 1.45886 1.06330 1.08064 1.52170 1.20615 1.02520 0.77819 0.94250 1.19391 0.94004 1.13599 0.96958 1.20746 0.96101 0.97115 0.94413 1.21174 0.97353 1.12448 0.95842 1.18040 0.91863 0.88826 0.93209 1.19923 1.09600 1.24823 0.98227 0.90656 1.26767 0.93048 0.92639 1.05430 1.69874 1.17448 1.17213 1.39762 0.85190 0.79418 0.79221 0.76127 1.18251 1.18714 1.18919 1.21261 0.97084 1.07273 0.96140 1.20742 0.97460 0.97841 0.94137 0.90651 0.88608 0.88977 0.80044 0.79297 0.87894 0.87070 0.85614 0.88386 0.89940 0.88376 0.87790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.59 10.22 71.23 0.73 -0.86 16 2 C 0.19 6.17 7.90 138.13 1.09 7.26 16 3 N -0.54 -19.25 11.25 -188.14 -2.12 -21.37 16 4 C -0.06 -1.85 11.87 83.52 0.99 -0.86 16 5 C -0.06 -1.82 11.58 83.09 0.96 -0.86 16 6 N -0.44 -13.76 2.73 -518.35 -1.42 -15.18 16 7 C 0.17 4.79 6.02 85.63 0.52 5.30 16 8 C -0.24 -9.04 5.48 -19.68 -0.11 -9.15 16 9 C -0.07 -2.58 9.64 22.22 0.21 -2.36 16 10 C -0.25 -11.71 9.80 22.73 0.22 -11.48 16 11 C 0.08 4.42 5.58 -21.29 -0.12 4.30 16 12 C -0.50 -26.57 9.05 23.46 0.21 -26.35 16 13 H 0.08 3.91 7.92 -2.91 -0.02 3.89 16 14 C 0.04 1.85 5.12 85.25 0.44 2.28 16 15 N -0.82 -41.98 10.96 21.83 0.24 -41.74 16 16 Si 0.98 37.66 29.60 68.60 2.03 39.70 16 17 H -0.26 -9.83 7.11 99.48 0.71 -9.12 16 18 H -0.26 -9.56 7.11 99.48 0.71 -8.85 16 19 H -0.26 -9.82 7.11 99.48 0.71 -9.11 16 20 C -0.20 -10.21 8.71 22.73 0.20 -10.01 16 21 C -0.08 -3.62 9.69 22.22 0.22 -3.41 16 22 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 23 H 0.10 2.04 8.14 -2.39 -0.02 2.02 16 24 H 0.09 1.80 7.03 -2.39 -0.02 1.79 16 25 H 0.18 4.69 8.06 -2.91 -0.02 4.67 16 26 H 0.19 4.55 8.06 -2.91 -0.02 4.53 16 27 H 0.10 2.56 8.12 -2.39 -0.02 2.54 16 28 H 0.11 2.57 6.98 -2.39 -0.02 2.55 16 29 H 0.13 3.97 8.05 -2.91 -0.02 3.95 16 30 H 0.10 4.38 8.06 -2.91 -0.02 4.36 16 31 H 0.29 13.35 8.30 -92.71 -0.77 12.58 16 32 H 0.10 5.36 6.12 -2.91 -0.02 5.34 16 33 H 0.10 4.03 8.06 -2.91 -0.02 4.01 16 Total: -1.00 -63.15 287.57 5.40 -57.75 By element: Atomic # 1 Polarization: 25.94 SS G_CDS: 1.10 Total: 27.04 kcal Atomic # 6 Polarization: -51.77 SS G_CDS: 5.56 Total: -46.21 kcal Atomic # 7 Polarization: -74.99 SS G_CDS: -3.29 Total: -78.28 kcal Atomic # 14 Polarization: 37.66 SS G_CDS: 2.03 Total: 39.70 kcal Total: -63.15 5.40 -57.75 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336272368.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.128 kcal (2) G-P(sol) polarization free energy of solvation -63.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.755 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds