Wall clock time and date at job start Thu Apr 9 2020 12:17:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.39872 * 126.04178 * 2 1 4 4 N 1.30835 * 108.20404 * 179.73747 * 3 2 1 5 5 N 1.40085 * 108.20302 * 0.40863 * 4 3 2 6 6 C 1.46500 * 126.03548 * 179.85424 * 5 4 3 7 7 C 1.50703 * 109.47108 * 304.68708 * 6 5 4 8 8 C 1.38633 * 119.75264 * 90.00144 * 7 6 5 9 9 C 1.37617 * 120.24769 * 179.97438 * 8 7 6 10 10 C 1.40712 * 119.74610 * 0.28046 * 9 8 7 11 11 C 1.41400 * 120.24377 * 179.70276 * 10 9 8 12 12 H 1.07999 * 120.00087 * 24.27936 * 11 10 9 13 13 C 1.39947 * 119.99564 * 204.28785 * 11 10 9 14 14 N 1.30821 * 120.00278 * 17.72524 * 13 11 10 15 15 Si 1.86794 * 119.99656 * 197.71822 * 13 11 10 16 16 H 1.48501 * 109.47529 * 60.00194 * 15 13 11 17 17 H 1.48506 * 109.47057 * 180.02562 * 15 13 11 18 18 H 1.48508 * 109.47379 * 300.00118 * 15 13 11 19 19 C 1.40721 * 119.51082 * 359.46549 * 10 9 8 20 20 C 1.37617 * 119.74346 * 0.50994 * 19 10 9 21 21 C 1.34946 * 107.92888 * 359.58304 * 5 4 3 22 22 H 1.09006 * 109.46970 * 270.00155 * 1 2 3 23 23 H 1.09005 * 109.47203 * 30.00177 * 1 2 3 24 24 H 1.08995 * 109.47348 * 150.00152 * 1 2 3 25 25 H 1.08005 * 125.89925 * 359.97438 * 3 2 1 26 26 H 1.09002 * 109.47179 * 184.68591 * 6 5 4 27 27 H 1.09004 * 109.47652 * 64.68322 * 6 5 4 28 28 H 1.07997 * 119.87048 * 359.95699 * 8 7 6 29 29 H 1.08001 * 120.12635 * 179.97438 * 9 8 7 30 30 H 0.96999 * 120.00115 * 179.97438 * 14 13 11 31 31 H 1.07999 * 120.12797 * 180.25726 * 19 10 9 32 32 H 1.08001 * 119.87226 * 179.74551 * 20 19 10 33 33 H 1.07993 * 126.12679 * 180.26138 * 21 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3299 1.1310 0.0000 4 7 3.5754 0.7302 0.0057 5 7 3.5843 -0.6706 0.0000 6 6 4.7745 -1.5248 0.0005 7 6 5.6580 -1.1561 -1.1634 8 6 6.6361 -0.1866 -1.0045 9 6 7.4489 0.1577 -2.0603 10 6 7.2803 -0.4743 -3.3062 11 6 8.1054 -0.1242 -4.3998 12 1 9.0810 0.3045 -4.2247 13 6 7.6576 -0.3332 -5.7092 14 7 6.3836 -0.5163 -5.9434 15 14 8.8790 -0.3503 -7.1223 16 1 9.8717 -1.4333 -6.9056 17 1 8.1567 -0.5882 -8.3980 18 1 9.5795 0.9575 -7.1872 19 6 6.2878 -1.4608 -3.4543 20 6 5.4868 -1.7895 -2.3846 21 6 2.3031 -1.0942 0.0001 22 1 -0.3633 0.0000 1.0277 23 1 -0.3634 0.8900 -0.5139 24 1 -0.3634 -0.8899 -0.5138 25 1 1.9951 2.1578 -0.0004 26 1 4.4727 -2.5685 -0.0887 27 1 5.3229 -1.3835 0.9319 28 1 6.7605 0.3005 -0.0487 29 1 8.2100 0.9135 -1.9345 30 1 6.0732 -0.6608 -6.8510 31 1 6.1525 -1.9552 -4.4050 32 1 4.7216 -2.5434 -2.4972 33 1 1.9724 -2.1223 0.0004 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336357981.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:17:10 Heat of formation + Delta-G solvation = 68.220662 kcal Electronic energy + Delta-G solvation = -16211.178066 eV Core-core repulsion = 13623.079424 eV Total energy + Delta-G solvation = -2588.098642 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 242.111 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.95990 -39.48247 -36.07860 -34.46939 -32.51487 -31.67710 -31.21077 -28.94391 -26.86294 -25.38329 -22.96847 -22.52164 -21.41650 -20.83569 -19.28128 -17.65088 -17.25433 -16.49584 -15.93765 -15.65394 -15.25083 -14.99658 -14.33761 -14.15358 -13.92980 -13.88668 -13.66231 -13.42011 -13.05833 -12.82373 -12.72716 -12.68167 -12.37618 -12.18226 -11.60549 -11.35412 -11.26136 -11.06452 -10.25171 -9.44262 -9.32429 -9.06623 -8.70101 -6.41236 0.77487 1.10030 1.17884 1.35265 1.44708 1.48878 1.96728 2.00327 2.17531 2.70927 3.64839 3.82354 4.09566 4.20177 4.26678 4.45371 4.47473 4.56565 4.59909 4.74863 4.96965 5.02217 5.07536 5.10902 5.28695 5.31420 5.39858 5.40642 5.64297 5.87598 5.91711 6.03870 6.13513 6.32357 6.34872 6.63447 6.87618 6.94820 6.97643 8.26862 Molecular weight = 242.11amu Principal moments of inertia in cm(-1) A = 0.035963 B = 0.005247 C = 0.004971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 778.398374 B = 5335.149733 C = 5630.878533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C -0.262 4.262 3 C 0.021 3.979 4 N -0.333 5.333 5 N -0.366 5.366 6 C 0.194 3.806 7 C -0.229 4.229 8 C -0.058 4.058 9 C -0.251 4.251 10 C 0.087 3.913 11 C -0.501 4.501 12 H 0.076 0.924 13 C 0.035 3.965 14 N -0.824 5.824 15 Si 0.985 3.015 16 H -0.258 1.258 17 H -0.266 1.266 18 H -0.260 1.260 19 C -0.196 4.196 20 C -0.084 4.084 21 C 0.042 3.958 22 H 0.069 0.931 23 H 0.064 0.936 24 H 0.068 0.932 25 H 0.193 0.807 26 H 0.122 0.878 27 H 0.089 0.911 28 H 0.106 0.894 29 H 0.093 0.907 30 H 0.290 0.710 31 H 0.102 0.898 32 H 0.110 0.890 33 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.298 -3.366 7.393 11.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.273 4.273 3 C -0.164 4.164 4 N -0.155 5.155 5 N -0.148 5.148 6 C 0.075 3.925 7 C -0.231 4.231 8 C -0.077 4.077 9 C -0.271 4.271 10 C 0.084 3.916 11 C -0.530 4.530 12 H 0.094 0.906 13 C -0.180 4.180 14 N -0.449 5.449 15 Si 0.805 3.195 16 H -0.182 1.182 17 H -0.190 1.190 18 H -0.184 1.184 19 C -0.215 4.215 20 C -0.103 4.103 21 C -0.105 4.105 22 H 0.088 0.912 23 H 0.083 0.917 24 H 0.087 0.913 25 H 0.210 0.790 26 H 0.140 0.860 27 H 0.107 0.893 28 H 0.124 0.876 29 H 0.111 0.889 30 H 0.100 0.900 31 H 0.120 0.880 32 H 0.128 0.872 33 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges -7.119 -3.139 7.232 10.622 hybrid contribution -0.148 0.093 -0.859 0.877 sum -7.267 -3.046 6.372 10.134 Atomic orbital electron populations 1.20033 0.87326 1.02632 1.02066 1.20526 0.98492 0.91332 1.16978 1.24221 0.90100 1.01085 1.00976 1.77327 1.22518 0.90980 1.24681 1.49140 1.06307 1.04149 1.55160 1.20519 0.82367 0.92645 0.96962 1.19318 1.02753 1.05489 0.95584 1.20594 0.94535 0.95422 0.97106 1.21145 1.05455 1.05143 0.95320 1.17999 0.91595 0.89413 0.92578 1.19890 1.03033 1.38582 0.91451 0.90566 1.26823 0.97186 0.91134 1.02843 1.69880 1.16371 1.34498 1.24164 0.85210 0.78372 0.80142 0.75736 1.18182 1.18969 1.18396 1.21261 1.01099 1.00938 0.98217 1.20779 0.97799 0.98972 0.92714 1.22978 0.83842 1.01541 1.02090 0.91237 0.91699 0.91343 0.78986 0.85980 0.89324 0.87618 0.88864 0.89971 0.88032 0.87195 0.78123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.19 10.37 71.23 0.74 -0.45 16 2 C -0.26 -7.18 6.10 -20.14 -0.12 -7.30 16 3 C 0.02 0.69 11.96 85.24 1.02 1.71 16 4 N -0.33 -12.99 12.41 -57.02 -0.71 -13.69 16 5 N -0.37 -12.51 3.67 -351.79 -1.29 -13.80 16 6 C 0.19 6.23 6.62 85.63 0.57 6.80 16 7 C -0.23 -9.74 5.34 -19.67 -0.11 -9.85 16 8 C -0.06 -2.66 9.67 22.22 0.21 -2.45 16 9 C -0.25 -13.02 9.80 22.73 0.22 -12.80 16 10 C 0.09 4.86 5.57 -21.29 -0.12 4.74 16 11 C -0.50 -27.83 9.05 23.46 0.21 -27.61 16 12 H 0.08 4.08 7.91 -2.91 -0.02 4.06 16 13 C 0.04 1.82 5.14 85.26 0.44 2.26 16 14 N -0.82 -44.14 10.95 21.83 0.24 -43.90 16 15 Si 0.99 38.62 29.59 68.60 2.03 40.65 16 16 H -0.26 -9.80 7.11 99.48 0.71 -9.09 16 17 H -0.27 -9.77 7.11 99.48 0.71 -9.06 16 18 H -0.26 -9.89 7.11 99.48 0.71 -9.18 16 19 C -0.20 -10.51 8.70 22.73 0.20 -10.32 16 20 C -0.08 -3.86 9.67 22.22 0.21 -3.65 16 21 C 0.04 1.16 11.36 83.54 0.95 2.11 16 22 H 0.07 1.12 8.14 -2.38 -0.02 1.10 16 23 H 0.06 1.16 8.14 -2.38 -0.02 1.14 16 24 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 25 H 0.19 5.00 8.06 -2.91 -0.02 4.98 16 26 H 0.12 3.02 8.01 -2.39 -0.02 3.00 16 27 H 0.09 2.60 8.08 -2.38 -0.02 2.58 16 28 H 0.11 4.42 8.06 -2.91 -0.02 4.40 16 29 H 0.09 4.64 8.06 -2.91 -0.02 4.62 16 30 H 0.29 13.98 8.30 -92.71 -0.77 13.21 16 31 H 0.10 5.68 6.16 -2.91 -0.02 5.67 16 32 H 0.11 4.40 8.06 -2.91 -0.02 4.38 16 33 H 0.20 3.81 8.06 -2.91 -0.02 3.79 16 Total: -1.00 -66.66 290.47 5.80 -60.86 By element: Atomic # 1 Polarization: 25.60 SS G_CDS: 1.10 Total: 26.69 kcal Atomic # 6 Polarization: -61.25 SS G_CDS: 4.43 Total: -56.82 kcal Atomic # 7 Polarization: -69.63 SS G_CDS: -1.76 Total: -71.39 kcal Atomic # 14 Polarization: 38.62 SS G_CDS: 2.03 Total: 40.65 kcal Total: -66.66 5.80 -60.86 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336357981.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.085 kcal (2) G-P(sol) polarization free energy of solvation -66.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.864 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds