Wall clock time and date at job start Thu Apr 9 2020 12:17:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42903 * 113.99811 * 2 1 4 4 C 1.53002 * 109.46828 * 180.02562 * 3 2 1 5 5 C 1.52996 * 110.53530 * 302.82619 * 4 3 2 6 6 N 1.47314 * 110.73077 * 65.75214 * 4 3 2 7 7 C 1.34524 * 106.62035 * 118.36706 * 6 4 3 8 8 O 1.21534 * 123.76962 * 180.20810 * 7 6 4 9 9 N 1.33790 * 112.45943 * 0.38034 * 7 6 4 10 10 C 1.46499 * 124.18121 * 179.86584 * 9 7 6 11 11 C 1.50701 * 109.46992 * 269.69862 * 10 9 7 12 12 H 1.07998 * 120.00129 * 0.02562 * 11 10 9 13 13 C 1.37880 * 119.99861 * 179.97438 * 11 10 9 14 14 N 1.31510 * 119.99913 * 0.02562 * 13 11 10 15 15 Si 1.86797 * 119.99734 * 180.02562 * 13 11 10 16 16 H 1.48506 * 109.47294 * 60.00559 * 15 13 11 17 17 H 1.48503 * 109.46954 * 180.02562 * 15 13 11 18 18 H 1.48503 * 109.47431 * 300.00157 * 15 13 11 19 19 C 1.34769 * 111.64302 * 359.59482 * 9 7 6 20 20 O 1.21237 * 127.15914 * 180.19133 * 19 9 7 21 21 H 1.09001 * 109.47631 * 59.99872 * 1 2 3 22 22 H 1.09007 * 109.46968 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.47033 * 299.99632 * 1 2 3 24 24 H 1.08994 * 109.46853 * 60.00163 * 3 2 1 25 25 H 1.09003 * 109.47151 * 299.99973 * 3 2 1 26 26 H 1.08996 * 109.47406 * 297.87537 * 5 4 3 27 27 H 1.09009 * 109.47006 * 57.87355 * 5 4 3 28 28 H 1.09000 * 109.47074 * 177.86785 * 5 4 3 29 29 H 0.97003 * 126.68673 * 298.61975 * 6 4 3 30 30 H 1.09002 * 109.47391 * 149.69852 * 10 9 7 31 31 H 1.09001 * 109.46813 * 29.69909 * 10 9 7 32 32 H 0.97002 * 119.99768 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 6 4.0096 0.3678 1.2030 6 7 4.0101 0.5797 -1.2572 7 6 4.7936 1.4961 -1.8536 8 8 5.3482 1.3193 -2.9204 9 7 4.8971 2.6227 -1.1393 10 6 5.6882 3.7862 -1.5475 11 6 7.0885 3.6567 -1.0058 12 1 7.3620 2.7937 -0.4169 13 6 8.0208 4.6394 -1.2631 14 7 7.6879 5.6899 -1.9807 15 14 9.7568 4.4783 -0.5923 16 1 10.3817 3.2421 -1.1276 17 1 10.5586 5.6579 -1.0059 18 1 9.7100 4.4074 0.8903 19 6 4.1791 2.5571 -0.0008 20 8 4.0710 3.4166 0.8474 21 1 -0.3634 0.5138 -0.8899 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 1.6886 1.8463 0.8900 25 1 1.6885 1.8464 -0.8900 26 1 3.7270 0.8791 2.1232 27 1 3.5459 -0.6184 1.1782 28 1 5.0936 0.2606 1.1650 29 1 3.7960 -0.3055 -1.5913 30 1 5.2292 4.6936 -1.1547 31 1 5.7229 3.8384 -2.6357 32 1 8.3438 6.3814 -2.1613 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000339711983.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:17:13 Heat of formation + Delta-G solvation = -115.294443 kcal Electronic energy + Delta-G solvation = -18012.867909 eV Core-core repulsion = 14973.669441 eV Total energy + Delta-G solvation = -3039.198468 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 242.110 amu Computer time = 1.42 seconds Orbital eigenvalues (eV) -43.48222 -39.68186 -39.01813 -37.19450 -36.43055 -34.63071 -32.07495 -29.90523 -28.50087 -26.88634 -25.76002 -24.75977 -22.45938 -21.41035 -19.08849 -18.87542 -17.64754 -17.60489 -17.29408 -16.94561 -16.73136 -16.17080 -16.06988 -15.67438 -15.13754 -14.70893 -14.45567 -13.87659 -13.71720 -13.37979 -13.25818 -13.14265 -12.70448 -12.68269 -12.41589 -12.27141 -12.02189 -11.74113 -11.17485 -10.72900 -10.70739 -10.67391 -10.40613 -8.33624 -6.48742 0.54995 1.30748 1.38086 1.41073 1.49801 2.03504 2.09143 2.35894 2.66813 2.99180 3.04450 3.52535 3.72998 4.24935 4.33053 4.34645 4.60954 4.62318 4.63304 4.69780 4.75416 4.93622 4.96268 5.06379 5.15042 5.55451 5.82363 5.85915 6.05691 6.25715 6.40538 6.56875 7.13834 7.25201 8.76178 Molecular weight = 242.11amu Principal moments of inertia in cm(-1) A = 0.039830 B = 0.006420 C = 0.006236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 702.822685 B = 4360.647099 C = 4489.085806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.390 6.390 3 C 0.079 3.921 4 C 0.132 3.868 5 C -0.135 4.135 6 N -0.696 5.696 7 C 0.696 3.304 8 O -0.583 6.583 9 N -0.570 5.570 10 C 0.263 3.737 11 C -0.559 4.559 12 H 0.054 0.946 13 C 0.015 3.985 14 N -0.921 5.921 15 Si 0.974 3.026 16 H -0.270 1.270 17 H -0.272 1.272 18 H -0.266 1.266 19 C 0.522 3.478 20 O -0.494 6.494 21 H 0.045 0.955 22 H 0.106 0.894 23 H 0.055 0.945 24 H 0.090 0.910 25 H 0.058 0.942 26 H 0.090 0.910 27 H 0.110 0.890 28 H 0.056 0.944 29 H 0.451 0.549 30 H 0.033 0.967 31 H 0.028 0.972 32 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.759 -12.117 6.544 19.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.309 6.309 3 C 0.001 3.999 4 C 0.041 3.959 5 C -0.193 4.193 6 N -0.362 5.362 7 C 0.397 3.603 8 O -0.459 6.459 9 N -0.314 5.314 10 C 0.144 3.856 11 C -0.597 4.597 12 H 0.073 0.927 13 C -0.185 4.185 14 N -0.559 5.559 15 Si 0.797 3.203 16 H -0.195 1.195 17 H -0.197 1.197 18 H -0.190 1.190 19 C 0.309 3.691 20 O -0.366 6.366 21 H 0.064 0.936 22 H 0.125 0.875 23 H 0.074 0.926 24 H 0.108 0.892 25 H 0.076 0.924 26 H 0.109 0.891 27 H 0.129 0.871 28 H 0.075 0.925 29 H 0.298 0.702 30 H 0.051 0.949 31 H 0.046 0.954 32 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -13.305 -11.636 6.336 18.777 hybrid contribution 0.741 0.324 -0.285 0.858 sum -12.563 -11.312 6.051 17.956 Atomic orbital electron populations 1.23003 0.78654 1.04401 1.01031 1.87795 1.21852 1.25582 1.95647 1.22427 0.88010 0.86612 1.02850 1.21502 0.95832 0.90035 0.88486 1.21929 1.01796 1.01456 0.94123 1.45454 1.50779 1.18067 1.21925 1.16098 0.79894 0.80945 0.83324 1.90922 1.52086 1.80301 1.22634 1.46740 1.45320 1.17517 1.21816 1.19067 0.89787 0.80922 0.95870 1.21469 0.96118 1.07205 1.34905 0.92725 1.25851 1.03682 0.94190 0.94804 1.70017 1.37053 1.10219 1.38660 0.85368 0.77774 0.78132 0.78994 1.19469 1.19658 1.19030 1.21120 0.78276 0.89249 0.80433 1.90715 1.61438 1.45150 1.39297 0.93611 0.87520 0.92648 0.89249 0.92393 0.89108 0.87119 0.92483 0.70211 0.94884 0.95439 0.91842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.29 11.01 113.37 1.25 1.54 16 2 O -0.39 -6.94 9.94 -148.98 -1.48 -8.42 16 3 C 0.08 1.70 5.18 71.98 0.37 2.07 16 4 C 0.13 3.65 1.13 2.98 0.00 3.66 16 5 C -0.14 -3.00 8.83 71.98 0.64 -2.36 16 6 N -0.70 -20.65 5.89 -439.82 -2.59 -23.24 16 7 C 0.70 29.57 8.62 179.44 1.55 31.12 16 8 O -0.58 -29.34 17.48 -3.82 -0.07 -29.40 16 9 N -0.57 -26.37 2.59 -777.21 -2.01 -28.38 16 10 C 0.26 14.72 5.46 85.63 0.47 15.19 16 11 C -0.56 -33.09 9.39 25.60 0.24 -32.85 16 12 H 0.05 3.20 7.81 -2.91 -0.02 3.18 16 13 C 0.02 0.88 5.46 84.66 0.46 1.35 16 14 N -0.92 -55.50 13.29 21.45 0.28 -55.21 16 15 Si 0.97 45.04 29.54 68.60 2.03 47.07 16 16 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 17 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 18 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 19 C 0.52 20.63 6.98 87.94 0.61 21.24 16 20 O -0.49 -21.79 17.76 -2.90 -0.05 -21.84 16 21 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 22 H 0.11 0.88 8.14 -2.38 -0.02 0.86 16 23 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 24 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 25 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 26 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 27 H 0.11 1.87 7.62 -2.38 -0.02 1.85 16 28 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 29 H 0.45 10.52 8.96 -92.71 -0.83 9.69 16 30 H 0.03 1.94 8.00 -2.39 -0.02 1.92 16 31 H 0.03 1.66 7.85 -2.39 -0.02 1.64 16 32 H 0.27 15.28 8.31 -92.71 -0.77 14.51 16 Total: -1.00 -73.46 285.41 2.01 -71.46 By element: Atomic # 1 Polarization: 6.72 SS G_CDS: 0.30 Total: 7.03 kcal Atomic # 6 Polarization: 35.36 SS G_CDS: 5.59 Total: 40.95 kcal Atomic # 7 Polarization: -102.52 SS G_CDS: -4.32 Total: -106.83 kcal Atomic # 8 Polarization: -58.06 SS G_CDS: -1.60 Total: -59.66 kcal Atomic # 14 Polarization: 45.04 SS G_CDS: 2.03 Total: 47.07 kcal Total: -73.46 2.01 -71.46 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339711983.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.839 kcal (2) G-P(sol) polarization free energy of solvation -73.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.455 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.42 seconds