Wall clock time and date at job start Thu Apr 9 2020 12:15:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36834 * 120.00472 * 2 1 4 4 H 1.08001 * 120.00114 * 204.31108 * 3 2 1 5 5 C 1.39069 * 120.00279 * 24.30976 * 3 2 1 6 6 N 1.31352 * 119.99449 * 12.92690 * 5 3 2 7 7 Si 1.86793 * 120.00335 * 192.92453 * 5 3 2 8 8 H 1.48493 * 109.47435 * 359.97438 * 7 5 3 9 9 H 1.48509 * 109.47013 * 120.00201 * 7 5 3 10 10 H 1.48503 * 109.47157 * 240.00020 * 7 5 3 11 11 C 1.34782 * 119.99401 * 180.02562 * 2 1 3 12 12 O 1.21598 * 119.99649 * 179.97438 * 11 2 1 13 13 C 1.47717 * 120.00335 * 359.97438 * 11 2 1 14 14 C 1.40196 * 120.96341 * 269.99788 * 13 11 2 15 15 F 1.35100 * 120.52646 * 0.25495 * 14 13 11 16 16 C 1.38383 * 118.94963 * 179.97438 * 14 13 11 17 17 N 1.31794 * 120.93894 * 0.02562 * 16 14 13 18 18 C 1.31794 * 122.15533 * 359.97438 * 17 16 14 19 19 C 1.38390 * 120.93291 * 0.02562 * 18 17 16 20 20 F 1.35105 * 120.52064 * 179.97438 * 19 18 17 21 21 H 1.09007 * 109.46526 * 266.08884 * 1 2 3 22 22 H 1.09004 * 109.47126 * 26.08127 * 1 2 3 23 23 H 1.08994 * 109.47908 * 146.08508 * 1 2 3 24 24 H 0.97004 * 119.99737 * 180.02562 * 6 5 3 25 25 H 1.08005 * 119.53548 * 179.97438 * 16 14 13 26 26 H 1.07994 * 119.53633 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1492 1.1850 0.0000 4 1 3.1574 1.2264 -0.3851 5 6 1.5465 2.3360 0.4958 6 7 0.4349 2.2483 1.1901 7 14 2.3177 4.0067 0.1745 8 1 3.5568 3.8344 -0.6255 9 1 1.3590 4.8587 -0.5741 10 1 2.6506 4.6553 1.4683 11 6 2.1388 -1.1673 -0.0005 12 8 3.3547 -1.1674 -0.0010 13 6 1.4001 -2.4466 -0.0005 14 6 1.0399 -3.0715 1.2017 15 9 1.3584 -2.5108 2.3888 16 6 0.3479 -4.2689 1.1530 17 7 0.0287 -4.8206 -0.0005 18 6 0.3469 -4.2684 -1.1541 19 6 1.0389 -3.0710 -1.2027 20 9 1.3613 -2.5125 -2.3900 21 1 -0.3633 -0.0701 1.0254 22 1 -0.3633 0.9231 -0.4518 23 1 -0.3635 -0.8527 -0.5733 24 1 0.0143 3.0512 1.5356 25 1 0.0661 -4.7587 2.0734 26 1 0.0644 -4.7577 -2.0745 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001627266530.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:15:45 Heat of formation + Delta-G solvation = -95.332910 kcal Electronic energy + Delta-G solvation = -17383.710708 eV Core-core repulsion = 14098.457227 eV Total energy + Delta-G solvation = -3285.253481 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 242.061 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -50.25318 -50.22273 -41.33663 -40.09059 -36.92437 -34.19105 -33.21935 -31.87772 -28.53319 -27.29512 -25.43857 -24.65832 -21.79999 -19.40903 -19.25665 -19.15402 -18.61189 -17.57321 -17.14118 -17.06537 -16.57348 -16.46874 -16.08746 -15.72583 -15.22874 -14.77157 -14.53160 -14.29295 -13.96801 -13.52349 -13.33514 -13.16532 -12.74980 -12.58914 -12.15594 -11.46203 -11.20507 -10.96940 -10.61543 -10.10074 -9.92443 -8.51834 -6.18432 -0.53667 -0.43819 1.24030 1.37836 1.52719 1.61999 2.13526 2.24020 2.48623 2.64834 2.82570 2.92316 3.21983 3.47632 3.62195 3.79969 4.28612 4.38362 4.42811 4.65259 4.77177 5.09771 5.29893 5.31038 5.86639 6.23322 6.41923 6.91164 7.14684 7.68933 8.52383 Molecular weight = 242.06amu Principal moments of inertia in cm(-1) A = 0.035084 B = 0.008036 C = 0.007477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 797.883796 B = 3483.458566 C = 3744.034500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.121 3.879 2 N -0.430 5.430 3 C -0.355 4.355 4 H 0.076 0.924 5 C 0.005 3.995 6 N -0.886 5.886 7 Si 0.999 3.001 8 H -0.272 1.272 9 H -0.259 1.259 10 H -0.271 1.271 11 C 0.463 3.537 12 O -0.622 6.622 13 C -0.142 4.142 14 C 0.085 3.915 15 F -0.128 7.128 16 C 0.092 3.908 17 N -0.424 5.424 18 C 0.092 3.908 19 C 0.085 3.915 20 F -0.124 7.124 21 H 0.049 0.951 22 H 0.071 0.929 23 H 0.051 0.949 24 H 0.281 0.719 25 H 0.220 0.780 26 H 0.222 0.778 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.439 -9.838 -2.207 11.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.021 4.021 2 N -0.146 5.146 3 C -0.483 4.483 4 H 0.094 0.906 5 C -0.199 4.199 6 N -0.522 5.522 7 Si 0.821 3.179 8 H -0.196 1.196 9 H -0.183 1.183 10 H -0.196 1.196 11 C 0.251 3.749 12 O -0.511 6.511 13 C -0.155 4.155 14 C 0.063 3.937 15 F -0.106 7.106 16 C -0.066 4.066 17 N -0.131 5.131 18 C -0.066 4.066 19 C 0.063 3.937 20 F -0.103 7.103 21 H 0.067 0.933 22 H 0.090 0.910 23 H 0.070 0.930 24 H 0.091 0.909 25 H 0.236 0.764 26 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges -6.476 -10.399 -2.107 12.431 hybrid contribution 1.186 2.143 0.088 2.451 sum -5.291 -8.256 -2.019 10.012 Atomic orbital electron populations 1.21463 0.79065 1.00815 1.00805 1.43739 1.06928 1.04361 1.59526 1.19735 1.00908 0.85359 1.42279 0.90567 1.26277 0.96764 1.03373 0.93449 1.70029 1.19361 1.31602 1.31250 0.84808 0.78486 0.76073 0.78540 1.19640 1.18310 1.19644 1.18110 0.87098 0.83984 0.85725 1.90600 1.14925 1.87255 1.58289 1.20876 1.01796 0.98270 0.94569 1.19033 1.00094 0.95079 0.79488 1.91551 1.90738 1.85063 1.43246 1.23465 0.94180 0.89585 0.99402 1.67821 1.17025 1.30961 0.97298 1.23509 0.94203 0.89546 0.99349 1.18998 1.00234 0.95053 0.79444 1.91548 1.90659 1.85105 1.42968 0.93273 0.91015 0.93023 0.90901 0.76369 0.76119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 5.64 8.46 127.77 1.08 6.72 15 2 N -0.43 -23.55 3.00 -662.34 -1.99 -25.54 15 3 C -0.36 -20.76 9.23 84.11 0.78 -19.98 15 4 H 0.08 4.75 7.44 -2.91 -0.02 4.73 15 5 C 0.01 0.28 5.04 84.96 0.43 0.70 15 6 N -0.89 -46.67 10.84 21.68 0.23 -46.43 15 7 Si 1.00 41.95 29.57 68.60 2.03 43.98 15 8 H -0.27 -11.63 7.11 99.48 0.71 -10.92 15 9 H -0.26 -10.03 7.11 99.48 0.71 -9.33 15 10 H -0.27 -11.04 7.11 99.48 0.71 -10.33 15 11 C 0.46 24.90 6.55 86.75 0.57 25.46 15 12 O -0.62 -38.65 16.81 -4.03 -0.07 -38.72 15 13 C -0.14 -5.84 4.01 -19.82 -0.08 -5.92 15 14 C 0.09 2.97 7.34 22.78 0.17 3.14 15 15 F -0.13 -5.02 16.92 44.97 0.76 -4.26 15 16 C 0.09 2.22 11.16 84.73 0.95 3.17 15 17 N -0.42 -9.82 10.33 -195.66 -2.02 -11.84 15 18 C 0.09 2.14 11.16 84.73 0.95 3.08 15 19 C 0.09 2.83 6.93 22.78 0.16 2.98 15 20 F -0.12 -4.47 16.92 44.97 0.76 -3.71 15 21 H 0.05 2.33 7.81 -2.38 -0.02 2.31 15 22 H 0.07 3.43 6.82 -2.38 -0.02 3.41 15 23 H 0.05 2.04 6.72 -2.39 -0.02 2.03 15 24 H 0.28 13.58 8.31 -92.71 -0.77 12.81 15 25 H 0.22 3.37 8.06 -2.91 -0.02 3.35 15 26 H 0.22 3.08 8.06 -2.91 -0.02 3.06 15 Total: -1.00 -71.96 248.80 5.93 -66.03 By element: Atomic # 1 Polarization: -0.11 SS G_CDS: 1.23 Total: 1.12 kcal Atomic # 6 Polarization: 14.37 SS G_CDS: 4.99 Total: 19.36 kcal Atomic # 7 Polarization: -80.03 SS G_CDS: -3.78 Total: -83.80 kcal Atomic # 8 Polarization: -38.65 SS G_CDS: -0.07 Total: -38.72 kcal Atomic # 9 Polarization: -9.49 SS G_CDS: 1.52 Total: -7.97 kcal Atomic # 14 Polarization: 41.95 SS G_CDS: 2.03 Total: 43.98 kcal Total: -71.96 5.93 -66.03 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001627266530.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.305 kcal (2) G-P(sol) polarization free energy of solvation -71.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.028 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds