Wall clock time and date at job start Thu Apr 9 2020 12:15:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86798 * 120.00293 * 2 1 4 4 H 1.48500 * 109.47242 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.46666 * 299.99385 * 3 2 1 6 6 H 1.48499 * 109.47447 * 59.99546 * 3 2 1 7 7 C 1.37883 * 119.99872 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00000 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00078 * 0.02562 * 7 2 1 10 10 O 1.42905 * 110.63909 * 298.30677 * 9 7 2 11 11 C 1.55160 * 110.71939 * 61.44574 * 9 7 2 12 12 C 1.54910 * 101.57859 * 153.86943 * 11 9 7 13 13 N 1.47419 * 104.83425 * 322.99139 * 12 11 9 14 14 C 1.34777 * 125.65158 * 204.09603 * 13 12 11 15 15 O 1.21287 * 120.00078 * 180.02562 * 14 13 12 16 16 C 1.50703 * 119.99966 * 0.02562 * 14 13 12 17 17 C 1.50696 * 109.47049 * 180.02562 * 16 14 13 18 18 N 1.34777 * 120.00076 * 180.02562 * 17 16 14 19 19 O 1.21281 * 120.00074 * 359.97438 * 17 16 14 20 20 C 1.47030 * 108.70199 * 24.35454 * 13 12 11 21 21 H 0.96999 * 120.00012 * 0.02562 * 1 2 3 22 22 H 0.96701 * 113.99822 * 61.69118 * 10 9 7 23 23 H 1.08992 * 111.00352 * 35.79411 * 11 9 7 24 24 H 1.09004 * 111.03996 * 271.95262 * 11 9 7 25 25 H 1.09001 * 110.36835 * 204.15230 * 12 11 9 26 26 H 1.08999 * 110.37223 * 81.83029 * 12 11 9 27 27 H 1.09002 * 109.46546 * 60.00118 * 16 14 13 28 28 H 1.09001 * 109.46944 * 299.99990 * 16 14 13 29 29 H 0.97001 * 120.00485 * 180.02562 * 18 17 16 30 30 H 0.97005 * 119.99790 * 359.72082 * 18 17 16 31 31 H 1.09006 * 109.87482 * 118.13130 * 20 13 12 32 32 H 1.09002 * 109.88272 * 239.29319 * 20 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3962 -1.2126 6 1 1.8905 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 8 0.4495 -2.6181 1.1777 11 6 0.3763 -2.6280 -1.2745 12 6 0.2717 -4.1662 -1.4257 13 7 1.5927 -4.6764 -1.0160 14 6 2.1329 -5.8517 -1.3946 15 8 3.2321 -6.1711 -0.9936 16 6 1.3710 -6.7691 -2.3160 17 6 2.1889 -8.0065 -2.5819 18 7 1.7051 -8.9744 -3.3854 19 8 3.2830 -8.1310 -2.0736 20 6 2.2209 -3.6935 -0.1210 21 1 -0.4850 0.8400 -0.0004 22 1 -0.2286 -1.9339 1.2625 23 1 0.8741 -2.1837 -2.1363 24 1 -0.6068 -2.1829 -1.1213 25 1 0.0672 -4.4324 -2.4627 26 1 -0.5064 -4.5597 -0.7717 27 1 1.1719 -6.2556 -3.2567 28 1 0.4273 -7.0512 -1.8491 29 1 2.2314 -9.7711 -3.5563 30 1 0.8286 -8.8763 -3.7893 31 1 2.3881 -4.1390 0.8597 32 1 3.1676 -3.3583 -0.5445 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001639946192.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:15:56 Heat of formation + Delta-G solvation = -120.835849 kcal Electronic energy + Delta-G solvation = -17756.463931 eV Core-core repulsion = 14717.025170 eV Total energy + Delta-G solvation = -3039.438761 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 242.110 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.00208 -38.66696 -36.97976 -34.31139 -33.62191 -32.22614 -30.76942 -29.25341 -28.13499 -25.06617 -22.51717 -21.14034 -19.69450 -18.75185 -17.41568 -17.20175 -16.98648 -15.87153 -15.62844 -15.01478 -14.86962 -14.36347 -14.15900 -13.46451 -13.37972 -12.92386 -12.38556 -12.06789 -11.83854 -11.44715 -11.39339 -11.34782 -10.92082 -10.64216 -10.45804 -10.12465 -9.97651 -9.69035 -9.40019 -9.08216 -8.68369 -8.23197 -7.96071 -6.30081 -4.37078 2.69281 3.13798 3.17049 3.18760 3.27893 3.33724 3.82559 4.26836 4.66709 4.95688 5.01536 5.22020 5.28158 5.53937 5.74080 5.89623 5.99040 6.21280 6.46884 6.72076 6.73337 6.90236 6.97613 7.25755 7.28708 7.33984 7.72411 8.02113 8.13174 8.30543 8.65761 8.73400 9.29381 9.38422 10.77573 Molecular weight = 242.11amu Principal moments of inertia in cm(-1) A = 0.049510 B = 0.005478 C = 0.005297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 565.406635 B = 5109.738052 C = 5284.642860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.072 3.928 3 Si 0.902 3.098 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.533 4.533 8 H 0.065 0.935 9 C 0.246 3.754 10 O -0.585 6.585 11 C -0.135 4.135 12 C 0.093 3.907 13 N -0.612 5.612 14 C 0.520 3.480 15 O -0.512 6.512 16 C -0.162 4.162 17 C 0.515 3.485 18 N -0.863 5.863 19 O -0.496 6.496 20 C 0.125 3.875 21 H 0.267 0.733 22 H 0.382 0.618 23 H 0.067 0.933 24 H 0.088 0.912 25 H 0.059 0.941 26 H 0.062 0.938 27 H 0.119 0.881 28 H 0.118 0.882 29 H 0.400 0.600 30 H 0.398 0.602 31 H 0.060 0.940 32 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.022 -10.101 -7.896 13.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.130 4.130 3 Si 0.730 3.270 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.572 4.572 8 H 0.083 0.917 9 C 0.206 3.794 10 O -0.394 6.394 11 C -0.173 4.173 12 C -0.029 4.029 13 N -0.347 5.347 14 C 0.305 3.695 15 O -0.386 6.386 16 C -0.205 4.205 17 C 0.298 3.702 18 N -0.430 5.430 19 O -0.367 6.367 20 C 0.003 3.997 21 H 0.077 0.923 22 H 0.232 0.768 23 H 0.086 0.914 24 H 0.106 0.894 25 H 0.077 0.923 26 H 0.080 0.920 27 H 0.137 0.863 28 H 0.136 0.864 29 H 0.231 0.769 30 H 0.226 0.774 31 H 0.079 0.921 32 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -3.419 -10.637 -7.155 13.268 hybrid contribution -0.482 1.181 -0.551 1.389 sum -3.901 -9.457 -7.707 12.808 Atomic orbital electron populations 1.69700 1.05949 1.27512 1.50489 1.24978 0.95025 0.99513 0.93476 0.86365 0.80257 0.82712 0.77686 1.19561 1.20847 1.20758 1.21574 0.93791 0.90205 1.51612 0.91685 1.19484 0.86981 0.90727 0.82223 1.86142 1.51795 1.56444 1.45035 1.23293 1.02856 0.90181 1.00995 1.22516 0.84517 0.97757 0.98139 1.48645 1.19494 1.18264 1.48331 1.19467 0.86566 0.81045 0.82382 1.90824 1.19639 1.72909 1.55259 1.21562 1.00831 0.95402 1.02671 1.20110 0.86983 0.84402 0.78743 1.43881 1.23285 1.23032 1.52758 1.90905 1.20060 1.78062 1.47656 1.22045 0.96706 0.88355 0.92587 0.92298 0.76818 0.91440 0.89368 0.92262 0.91963 0.86340 0.86378 0.76935 0.77408 0.92137 0.91014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -22.64 10.67 55.43 0.59 -22.05 16 2 C 0.07 1.84 5.28 -17.82 -0.09 1.75 16 3 Si 0.90 20.15 29.54 -169.99 -5.02 15.13 16 4 H -0.27 -6.12 7.11 56.52 0.40 -5.71 16 5 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 6 H -0.28 -6.30 7.11 56.52 0.40 -5.89 16 7 C -0.53 -13.91 8.22 -34.44 -0.28 -14.20 16 8 H 0.06 1.72 7.57 -52.49 -0.40 1.32 16 9 C 0.25 5.87 0.85 -89.94 -0.08 5.79 16 10 O -0.59 -14.50 13.07 -35.23 -0.46 -14.96 16 11 C -0.13 -2.80 5.47 -24.58 -0.13 -2.93 16 12 C 0.09 1.58 6.68 -2.53 -0.02 1.56 16 13 N -0.61 -11.97 3.33 -170.51 -0.57 -12.53 16 14 C 0.52 9.91 7.84 -10.98 -0.09 9.82 16 15 O -0.51 -12.17 14.51 -18.97 -0.28 -12.45 16 16 C -0.16 -2.03 5.19 -29.04 -0.15 -2.18 16 17 C 0.52 7.12 8.09 -10.99 -0.09 7.03 16 18 N -0.86 -7.01 8.87 31.22 0.28 -6.74 16 19 O -0.50 -9.86 15.02 -18.96 -0.28 -10.15 16 20 C 0.12 2.85 6.23 -3.06 -0.02 2.83 16 21 H 0.27 6.46 8.31 -40.82 -0.34 6.12 16 22 H 0.38 9.39 7.46 45.56 0.34 9.73 16 23 H 0.07 1.45 8.04 -51.93 -0.42 1.03 16 24 H 0.09 1.89 7.54 -51.93 -0.39 1.50 16 25 H 0.06 0.78 7.48 -51.93 -0.39 0.40 16 26 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 27 H 0.12 1.12 7.85 -51.93 -0.41 0.72 16 28 H 0.12 1.12 8.14 -51.93 -0.42 0.70 16 29 H 0.40 2.90 8.93 -40.82 -0.36 2.53 16 30 H 0.40 1.76 8.83 -40.82 -0.36 1.40 16 31 H 0.06 1.45 8.07 -51.93 -0.42 1.03 16 32 H 0.07 1.69 7.66 -51.93 -0.40 1.29 16 LS Contribution 274.19 15.07 4.13 4.13 Total: -1.00 -33.49 274.19 -5.74 -39.24 By element: Atomic # 1 Polarization: 14.08 SS G_CDS: -3.18 Total: 10.90 kcal Atomic # 6 Polarization: 10.43 SS G_CDS: -0.95 Total: 9.48 kcal Atomic # 7 Polarization: -41.62 SS G_CDS: 0.30 Total: -41.32 kcal Atomic # 8 Polarization: -36.53 SS G_CDS: -1.02 Total: -37.55 kcal Atomic # 14 Polarization: 20.15 SS G_CDS: -5.02 Total: 15.13 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -33.49 -5.74 -39.24 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001639946192.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.600 kcal (2) G-P(sol) polarization free energy of solvation -33.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.236 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds