Wall clock time and date at job start Thu Apr 9 2020 12:15:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86798 * 120.00293 * 2 1 4 4 H 1.48500 * 109.47242 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.46666 * 299.99385 * 3 2 1 6 6 H 1.48499 * 109.47447 * 59.99546 * 3 2 1 7 7 C 1.37883 * 119.99872 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00000 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00078 * 0.02562 * 7 2 1 10 10 O 1.42905 * 110.63909 * 298.30677 * 9 7 2 11 11 C 1.55160 * 110.71939 * 61.44574 * 9 7 2 12 12 C 1.54910 * 101.57859 * 153.86943 * 11 9 7 13 13 N 1.47419 * 104.83425 * 322.99139 * 12 11 9 14 14 C 1.34777 * 125.65158 * 204.09603 * 13 12 11 15 15 O 1.21287 * 120.00078 * 180.02562 * 14 13 12 16 16 C 1.50703 * 119.99966 * 0.02562 * 14 13 12 17 17 C 1.50696 * 109.47049 * 180.02562 * 16 14 13 18 18 N 1.34777 * 120.00076 * 180.02562 * 17 16 14 19 19 O 1.21281 * 120.00074 * 359.97438 * 17 16 14 20 20 C 1.47030 * 108.70199 * 24.35454 * 13 12 11 21 21 H 0.96999 * 120.00012 * 0.02562 * 1 2 3 22 22 H 0.96701 * 113.99822 * 61.69118 * 10 9 7 23 23 H 1.08992 * 111.00352 * 35.79411 * 11 9 7 24 24 H 1.09004 * 111.03996 * 271.95262 * 11 9 7 25 25 H 1.09001 * 110.36835 * 204.15230 * 12 11 9 26 26 H 1.08999 * 110.37223 * 81.83029 * 12 11 9 27 27 H 1.09002 * 109.46546 * 60.00118 * 16 14 13 28 28 H 1.09001 * 109.46944 * 299.99990 * 16 14 13 29 29 H 0.97001 * 120.00485 * 180.02562 * 18 17 16 30 30 H 0.97005 * 119.99790 * 359.72082 * 18 17 16 31 31 H 1.09006 * 109.87482 * 118.13130 * 20 13 12 32 32 H 1.09002 * 109.88272 * 239.29319 * 20 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3962 -1.2126 6 1 1.8905 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 8 0.4495 -2.6181 1.1777 11 6 0.3763 -2.6280 -1.2745 12 6 0.2717 -4.1662 -1.4257 13 7 1.5927 -4.6764 -1.0160 14 6 2.1329 -5.8517 -1.3946 15 8 3.2321 -6.1711 -0.9936 16 6 1.3710 -6.7691 -2.3160 17 6 2.1889 -8.0065 -2.5819 18 7 1.7051 -8.9744 -3.3854 19 8 3.2830 -8.1310 -2.0736 20 6 2.2209 -3.6935 -0.1210 21 1 -0.4850 0.8400 -0.0004 22 1 -0.2286 -1.9339 1.2625 23 1 0.8741 -2.1837 -2.1363 24 1 -0.6068 -2.1829 -1.1213 25 1 0.0672 -4.4324 -2.4627 26 1 -0.5064 -4.5597 -0.7717 27 1 1.1719 -6.2556 -3.2567 28 1 0.4273 -7.0512 -1.8491 29 1 2.2314 -9.7711 -3.5563 30 1 0.8286 -8.8763 -3.7893 31 1 2.3881 -4.1390 0.8597 32 1 3.1676 -3.3583 -0.5445 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001639946192.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:15:55 Heat of formation + Delta-G solvation = -149.580518 kcal Electronic energy + Delta-G solvation = -17757.710393 eV Core-core repulsion = 14717.025170 eV Total energy + Delta-G solvation = -3040.685224 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 242.110 amu Computer time = 1.78 seconds Orbital eigenvalues (eV) -41.34750 -40.04653 -38.61115 -36.05305 -34.60708 -34.20168 -32.13877 -30.73360 -29.78521 -26.91250 -24.05671 -22.34415 -21.37665 -20.14520 -19.15808 -18.42716 -18.11694 -17.18186 -16.93249 -16.86763 -16.37097 -15.93173 -15.71713 -14.94143 -14.81691 -14.39725 -13.88997 -13.81278 -13.29239 -13.21970 -13.09375 -12.88137 -12.65876 -12.40344 -12.26142 -11.94722 -11.26544 -11.17590 -10.67033 -10.56644 -10.51283 -10.11369 -9.55756 -8.24592 -6.38350 1.39850 1.44658 1.54418 1.64638 1.76066 1.91834 2.39950 2.76527 3.01054 3.46548 3.86089 4.04789 4.12184 4.32426 4.34808 4.44067 4.53564 4.62274 4.75007 4.96303 5.21556 5.29952 5.50675 5.58110 5.78222 5.98509 6.10385 6.53657 6.62433 6.70021 7.23339 7.32162 7.42523 7.49810 8.81500 Molecular weight = 242.11amu Principal moments of inertia in cm(-1) A = 0.049510 B = 0.005478 C = 0.005297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 565.406635 B = 5109.738052 C = 5284.642860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.041 3.959 3 Si 0.956 3.044 4 H -0.280 1.280 5 H -0.273 1.273 6 H -0.278 1.278 7 C -0.566 4.566 8 H 0.046 0.954 9 C 0.234 3.766 10 O -0.593 6.593 11 C -0.126 4.126 12 C 0.102 3.898 13 N -0.614 5.614 14 C 0.509 3.491 15 O -0.569 6.569 16 C -0.147 4.147 17 C 0.511 3.489 18 N -0.832 5.832 19 O -0.570 6.570 20 C 0.129 3.871 21 H 0.272 0.728 22 H 0.380 0.620 23 H 0.057 0.943 24 H 0.082 0.918 25 H 0.113 0.887 26 H 0.077 0.923 27 H 0.163 0.837 28 H 0.161 0.839 29 H 0.408 0.592 30 H 0.421 0.579 31 H 0.036 0.964 32 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.269 -10.737 -9.856 16.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.160 4.160 3 Si 0.782 3.218 4 H -0.205 1.205 5 H -0.198 1.198 6 H -0.204 1.204 7 C -0.604 4.604 8 H 0.064 0.936 9 C 0.194 3.806 10 O -0.402 6.402 11 C -0.165 4.165 12 C -0.019 4.019 13 N -0.348 5.348 14 C 0.298 3.702 15 O -0.447 6.447 16 C -0.189 4.189 17 C 0.295 3.705 18 N -0.398 5.398 19 O -0.447 6.447 20 C 0.006 3.994 21 H 0.082 0.918 22 H 0.230 0.770 23 H 0.075 0.925 24 H 0.100 0.900 25 H 0.131 0.869 26 H 0.095 0.905 27 H 0.180 0.820 28 H 0.179 0.821 29 H 0.239 0.761 30 H 0.253 0.747 31 H 0.055 0.945 32 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -5.760 -11.303 -9.177 15.657 hybrid contribution 0.195 1.366 0.062 1.381 sum -5.565 -9.937 -9.115 14.587 Atomic orbital electron populations 1.69737 1.06348 1.28332 1.49749 1.25517 0.95881 1.01665 0.92978 0.85542 0.78644 0.79600 0.78005 1.20484 1.19781 1.20352 1.21762 0.93275 0.92096 1.53246 0.93604 1.19605 0.87591 0.90083 0.83308 1.86126 1.51819 1.56268 1.45976 1.23072 1.01368 0.93473 0.98594 1.22629 0.83231 0.94421 1.01666 1.48738 1.20259 1.18132 1.47710 1.20686 0.86279 0.80962 0.82255 1.90809 1.22495 1.74012 1.57389 1.21618 1.00723 0.93515 1.03070 1.20413 0.86141 0.85448 0.78545 1.43580 1.24052 1.21708 1.50478 1.90898 1.23240 1.79620 1.50919 1.21724 0.96290 0.89134 0.92292 0.91829 0.77034 0.92452 0.89980 0.86886 0.90462 0.81973 0.82126 0.76099 0.74663 0.94513 0.93022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -45.04 10.67 21.45 0.23 -44.81 16 2 C 0.04 2.10 5.28 84.66 0.45 2.55 16 3 Si 0.96 41.34 29.54 68.60 2.03 43.36 16 4 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 5 H -0.27 -11.30 7.11 99.48 0.71 -10.60 16 6 H -0.28 -11.80 7.11 99.48 0.71 -11.09 16 7 C -0.57 -30.24 8.22 25.60 0.21 -30.02 16 8 H 0.05 2.54 7.57 -2.91 -0.02 2.52 16 9 C 0.23 11.31 0.85 -10.35 -0.01 11.31 16 10 O -0.59 -29.71 13.07 -148.98 -1.95 -31.66 16 11 C -0.13 -5.09 5.47 31.99 0.17 -4.91 16 12 C 0.10 3.09 6.68 86.86 0.58 3.67 16 13 N -0.61 -23.24 3.33 -811.76 -2.70 -25.94 16 14 C 0.51 18.76 7.84 87.66 0.69 19.45 16 15 O -0.57 -27.79 14.51 20.39 0.30 -27.49 16 16 C -0.15 -3.06 5.19 29.10 0.15 -2.91 16 17 C 0.51 12.83 8.09 87.66 0.71 13.54 16 18 N -0.83 -10.38 8.87 -173.53 -1.54 -11.92 16 19 O -0.57 -22.75 15.02 20.41 0.31 -22.44 16 20 C 0.13 6.08 6.23 86.73 0.54 6.62 16 21 H 0.27 12.85 8.31 -92.71 -0.77 12.08 16 22 H 0.38 18.83 7.46 -74.06 -0.55 18.27 16 23 H 0.06 2.39 8.04 -2.39 -0.02 2.37 16 24 H 0.08 3.40 7.54 -2.39 -0.02 3.38 16 25 H 0.11 2.28 7.48 -2.39 -0.02 2.26 16 26 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 27 H 0.16 2.01 7.85 -2.39 -0.02 1.99 16 28 H 0.16 2.04 8.14 -2.39 -0.02 2.02 16 29 H 0.41 4.67 8.93 -92.71 -0.83 3.85 16 30 H 0.42 1.51 8.83 -92.70 -0.82 0.69 16 31 H 0.04 1.85 8.07 -2.38 -0.02 1.83 16 32 H 0.05 2.58 7.66 -2.39 -0.02 2.56 16 Total: -1.00 -78.15 274.19 -0.86 -79.00 By element: Atomic # 1 Polarization: 23.62 SS G_CDS: -1.02 Total: 22.60 kcal Atomic # 6 Polarization: 15.79 SS G_CDS: 3.49 Total: 19.28 kcal Atomic # 7 Polarization: -78.65 SS G_CDS: -4.01 Total: -82.66 kcal Atomic # 8 Polarization: -80.25 SS G_CDS: -1.34 Total: -81.60 kcal Atomic # 14 Polarization: 41.34 SS G_CDS: 2.03 Total: 43.36 kcal Total: -78.15 -0.86 -79.00 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001639946192.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.576 kcal (2) G-P(sol) polarization free energy of solvation -78.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.004 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.78 seconds