Wall clock time and date at job start Thu Apr 9 2020 12:16:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86804 * 119.99434 * 2 1 4 4 H 1.48495 * 109.47133 * 239.99778 * 3 2 1 5 5 H 1.48499 * 109.47373 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.47025 * 120.00357 * 3 2 1 7 7 C 1.37873 * 120.00823 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00518 * 179.97438 * 7 2 1 9 9 C 1.50709 * 119.99417 * 359.97438 * 7 2 1 10 10 O 1.42901 * 110.64086 * 56.85928 * 9 7 2 11 11 C 1.55156 * 110.87197 * 293.60858 * 9 7 2 12 12 C 1.55123 * 101.48498 * 205.90029 * 11 9 7 13 13 N 1.47423 * 104.72654 * 37.29727 * 12 11 9 14 14 C 1.34777 * 125.65109 * 155.81318 * 13 12 11 15 15 O 1.21283 * 119.99750 * 179.69290 * 14 13 12 16 16 C 1.50702 * 119.99928 * 359.97383 * 14 13 12 17 17 C 1.50700 * 109.46869 * 179.72354 * 16 14 13 18 18 N 1.34774 * 119.99464 * 179.97438 * 17 16 14 19 19 O 1.21277 * 120.00023 * 359.97438 * 17 16 14 20 20 C 1.47025 * 108.69835 * 335.55436 * 13 12 11 21 21 H 0.97003 * 120.00886 * 359.97438 * 1 2 3 22 22 H 0.96696 * 113.99872 * 303.13921 * 10 9 7 23 23 H 1.09005 * 111.00556 * 324.14164 * 11 9 7 24 24 H 1.08999 * 111.00040 * 87.95569 * 11 9 7 25 25 H 1.09004 * 110.49673 * 278.45187 * 12 11 9 26 26 H 1.09004 * 110.34018 * 156.06510 * 12 11 9 27 27 H 1.09004 * 109.46965 * 299.72211 * 16 14 13 28 28 H 1.08994 * 109.46990 * 59.72065 * 16 14 13 29 29 H 0.96995 * 120.00583 * 359.97438 * 18 17 16 30 30 H 0.97005 * 119.99821 * 179.97438 * 18 17 16 31 31 H 1.09004 * 109.88256 * 120.70346 * 20 13 12 32 32 H 1.08999 * 109.88203 * 241.86445 * 20 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2489 1.6179 0.0000 4 1 3.1027 1.6966 -1.2124 5 1 1.2839 2.7465 0.0006 6 1 3.1027 1.6966 1.2125 7 6 2.0046 -1.1939 -0.0005 8 1 3.0845 -1.1939 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 8 0.3657 -2.5696 -1.1200 11 6 0.4724 -2.6879 1.3281 12 6 0.3744 -4.2338 1.4118 13 7 1.6636 -4.7199 0.8874 14 6 2.2284 -5.9103 1.1711 15 8 3.2945 -6.2090 0.6760 16 6 1.5321 -6.8727 2.0985 17 6 2.3633 -8.1215 2.2427 18 7 1.9356 -9.1283 3.0300 19 8 3.4170 -8.2204 1.6505 20 6 2.2282 -3.6936 -0.0011 21 1 -0.4851 0.8400 0.0004 22 1 -0.2690 -1.8415 -1.1659 23 1 1.0329 -2.2824 2.1705 24 1 -0.5183 -2.2375 1.2676 25 1 -0.4475 -4.5980 0.7953 26 1 0.2424 -4.5496 2.4467 27 1 1.4034 -6.4070 3.0756 28 1 0.5562 -7.1312 1.6878 29 1 1.0931 -9.0491 3.5040 30 1 2.4704 -9.9323 3.1226 31 1 3.2023 -3.3760 0.3712 32 1 2.3269 -4.0913 -1.0112 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001639946193.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:16:00 Heat of formation + Delta-G solvation = -120.816177 kcal Electronic energy + Delta-G solvation = -17750.488359 eV Core-core repulsion = 14711.050451 eV Total energy + Delta-G solvation = -3039.437908 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 242.110 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.00102 -38.66125 -36.97115 -34.32499 -33.62417 -32.16371 -30.77897 -29.26841 -28.12831 -25.06915 -22.52813 -21.13912 -19.67108 -18.74827 -17.43123 -17.20691 -17.00880 -15.86969 -15.61961 -15.03482 -14.86042 -14.35461 -14.12489 -13.46208 -13.37470 -12.92748 -12.38628 -12.00864 -11.83643 -11.47853 -11.39234 -11.35754 -10.88996 -10.63918 -10.52271 -10.13256 -9.97682 -9.69070 -9.42060 -9.08149 -8.67378 -8.22884 -7.96072 -6.31176 -4.38253 2.69304 3.13664 3.17332 3.21785 3.26127 3.30744 3.82638 4.26042 4.66705 4.94746 5.01266 5.21877 5.28352 5.53134 5.76518 5.90214 5.98456 6.20760 6.47621 6.71592 6.73283 6.89852 6.97060 7.25739 7.28583 7.32574 7.72199 7.99651 8.13399 8.30545 8.63590 8.73494 9.30250 9.44327 10.76666 Molecular weight = 242.11amu Principal moments of inertia in cm(-1) A = 0.050482 B = 0.005453 C = 0.005263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 554.522615 B = 5133.231462 C = 5318.521287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.073 3.927 3 Si 0.904 3.096 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.535 4.535 8 H 0.065 0.935 9 C 0.248 3.752 10 O -0.587 6.587 11 C -0.137 4.137 12 C 0.095 3.905 13 N -0.612 5.612 14 C 0.520 3.480 15 O -0.512 6.512 16 C -0.162 4.162 17 C 0.515 3.485 18 N -0.863 5.863 19 O -0.495 6.495 20 C 0.124 3.876 21 H 0.270 0.730 22 H 0.386 0.614 23 H 0.067 0.933 24 H 0.085 0.915 25 H 0.063 0.937 26 H 0.059 0.941 27 H 0.119 0.881 28 H 0.118 0.882 29 H 0.398 0.602 30 H 0.400 0.600 31 H 0.071 0.929 32 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.357 -10.347 7.983 13.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.130 4.130 3 Si 0.731 3.269 4 H -0.199 1.199 5 H -0.211 1.211 6 H -0.201 1.201 7 C -0.574 4.574 8 H 0.083 0.917 9 C 0.207 3.793 10 O -0.397 6.397 11 C -0.176 4.176 12 C -0.028 4.028 13 N -0.347 5.347 14 C 0.305 3.695 15 O -0.386 6.386 16 C -0.205 4.205 17 C 0.298 3.702 18 N -0.430 5.430 19 O -0.367 6.367 20 C 0.002 3.998 21 H 0.080 0.920 22 H 0.238 0.762 23 H 0.086 0.914 24 H 0.103 0.897 25 H 0.081 0.919 26 H 0.077 0.923 27 H 0.136 0.864 28 H 0.136 0.864 29 H 0.226 0.774 30 H 0.231 0.769 31 H 0.089 0.911 32 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -2.863 -10.868 7.112 13.300 hybrid contribution -0.387 1.167 0.603 1.369 sum -3.250 -9.701 7.715 12.814 Atomic orbital electron populations 1.69556 1.05982 1.27851 1.50541 1.24976 0.95024 0.99539 0.93415 0.86456 0.79534 0.81952 0.78941 1.19947 1.21093 1.20055 1.21532 0.93769 0.90266 1.51785 0.91714 1.19437 0.86175 0.90793 0.82868 1.86101 1.51417 1.53286 1.48908 1.23348 1.02790 0.90302 1.01164 1.22530 0.85341 0.97819 0.97105 1.48638 1.22411 1.16235 1.47457 1.19465 0.85838 0.81256 0.82903 1.90822 1.21221 1.74768 1.51819 1.21563 1.01101 0.94929 1.02882 1.20108 0.86526 0.84539 0.79062 1.43879 1.27058 1.20489 1.51530 1.90904 1.22313 1.79682 1.43780 1.22063 0.97380 0.87418 0.92897 0.92039 0.76222 0.91408 0.89680 0.91884 0.92281 0.86354 0.86367 0.77409 0.76936 0.91061 0.92112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -22.77 10.70 55.43 0.59 -22.18 16 2 C 0.07 1.85 5.28 -17.82 -0.09 1.75 16 3 Si 0.90 20.12 29.54 -169.99 -5.02 15.10 16 4 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 5 H -0.29 -6.27 7.11 56.52 0.40 -5.86 16 6 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 7 C -0.54 -13.94 8.22 -34.44 -0.28 -14.23 16 8 H 0.06 1.70 7.53 -52.49 -0.40 1.30 16 9 C 0.25 5.93 0.85 -89.93 -0.08 5.86 16 10 O -0.59 -14.72 13.08 -35.23 -0.46 -15.18 16 11 C -0.14 -2.85 5.69 -24.47 -0.14 -2.99 16 12 C 0.09 1.61 6.69 -2.41 -0.02 1.59 16 13 N -0.61 -11.98 3.32 -170.38 -0.57 -12.55 16 14 C 0.52 9.91 7.84 -10.98 -0.09 9.83 16 15 O -0.51 -12.18 14.51 -18.96 -0.28 -12.45 16 16 C -0.16 -2.03 5.19 -29.03 -0.15 -2.18 16 17 C 0.52 7.12 8.09 -10.99 -0.09 7.03 16 18 N -0.86 -7.01 8.87 31.22 0.28 -6.74 16 19 O -0.50 -9.86 15.02 -18.96 -0.28 -10.15 16 20 C 0.12 2.84 6.22 -3.06 -0.02 2.82 16 21 H 0.27 6.56 8.31 -40.82 -0.34 6.22 16 22 H 0.39 9.72 6.98 45.56 0.32 10.04 16 23 H 0.07 1.44 8.05 -51.93 -0.42 1.02 16 24 H 0.08 1.82 7.78 -51.93 -0.40 1.42 16 25 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 26 H 0.06 0.78 7.49 -51.93 -0.39 0.39 16 27 H 0.12 1.12 7.86 -51.93 -0.41 0.71 16 28 H 0.12 1.13 8.14 -51.93 -0.42 0.71 16 29 H 0.40 1.76 8.83 -40.82 -0.36 1.40 16 30 H 0.40 2.90 8.93 -40.82 -0.36 2.53 16 31 H 0.07 1.67 7.63 -51.93 -0.40 1.27 16 32 H 0.06 1.46 8.07 -51.93 -0.42 1.04 16 LS Contribution 274.18 15.07 4.13 4.13 Total: -1.00 -33.45 274.18 -5.78 -39.23 By element: Atomic # 1 Polarization: 14.53 SS G_CDS: -3.22 Total: 11.31 kcal Atomic # 6 Polarization: 10.43 SS G_CDS: -0.95 Total: 9.47 kcal Atomic # 7 Polarization: -41.77 SS G_CDS: 0.30 Total: -41.46 kcal Atomic # 8 Polarization: -36.76 SS G_CDS: -1.02 Total: -37.78 kcal Atomic # 14 Polarization: 20.12 SS G_CDS: -5.02 Total: 15.10 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -33.45 -5.78 -39.23 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001639946193.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.589 kcal (2) G-P(sol) polarization free energy of solvation -33.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.227 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds