Wall clock time and date at job start Thu Apr 9 2020 12:15:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86804 * 119.99434 * 2 1 4 4 H 1.48495 * 109.47133 * 239.99778 * 3 2 1 5 5 H 1.48499 * 109.47373 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.47025 * 120.00357 * 3 2 1 7 7 C 1.37873 * 120.00823 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00518 * 179.97438 * 7 2 1 9 9 C 1.50709 * 119.99417 * 359.97438 * 7 2 1 10 10 O 1.42901 * 110.64086 * 56.85928 * 9 7 2 11 11 C 1.55156 * 110.87197 * 293.60858 * 9 7 2 12 12 C 1.55123 * 101.48498 * 205.90029 * 11 9 7 13 13 N 1.47423 * 104.72654 * 37.29727 * 12 11 9 14 14 C 1.34777 * 125.65109 * 155.81318 * 13 12 11 15 15 O 1.21283 * 119.99750 * 179.69290 * 14 13 12 16 16 C 1.50702 * 119.99928 * 359.97383 * 14 13 12 17 17 C 1.50700 * 109.46869 * 179.72354 * 16 14 13 18 18 N 1.34774 * 119.99464 * 179.97438 * 17 16 14 19 19 O 1.21277 * 120.00023 * 359.97438 * 17 16 14 20 20 C 1.47025 * 108.69835 * 335.55436 * 13 12 11 21 21 H 0.97003 * 120.00886 * 359.97438 * 1 2 3 22 22 H 0.96696 * 113.99872 * 303.13921 * 10 9 7 23 23 H 1.09005 * 111.00556 * 324.14164 * 11 9 7 24 24 H 1.08999 * 111.00040 * 87.95569 * 11 9 7 25 25 H 1.09004 * 110.49673 * 278.45187 * 12 11 9 26 26 H 1.09004 * 110.34018 * 156.06510 * 12 11 9 27 27 H 1.09004 * 109.46965 * 299.72211 * 16 14 13 28 28 H 1.08994 * 109.46990 * 59.72065 * 16 14 13 29 29 H 0.96995 * 120.00583 * 359.97438 * 18 17 16 30 30 H 0.97005 * 119.99821 * 179.97438 * 18 17 16 31 31 H 1.09004 * 109.88256 * 120.70346 * 20 13 12 32 32 H 1.08999 * 109.88203 * 241.86445 * 20 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2489 1.6179 0.0000 4 1 3.1027 1.6966 -1.2124 5 1 1.2839 2.7465 0.0006 6 1 3.1027 1.6966 1.2125 7 6 2.0046 -1.1939 -0.0005 8 1 3.0845 -1.1939 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 8 0.3657 -2.5696 -1.1200 11 6 0.4724 -2.6879 1.3281 12 6 0.3744 -4.2338 1.4118 13 7 1.6636 -4.7199 0.8874 14 6 2.2284 -5.9103 1.1711 15 8 3.2945 -6.2090 0.6760 16 6 1.5321 -6.8727 2.0985 17 6 2.3633 -8.1215 2.2427 18 7 1.9356 -9.1283 3.0300 19 8 3.4170 -8.2204 1.6505 20 6 2.2282 -3.6936 -0.0011 21 1 -0.4851 0.8400 0.0004 22 1 -0.2690 -1.8415 -1.1659 23 1 1.0329 -2.2824 2.1705 24 1 -0.5183 -2.2375 1.2676 25 1 -0.4475 -4.5980 0.7953 26 1 0.2424 -4.5496 2.4467 27 1 1.4034 -6.4070 3.0756 28 1 0.5562 -7.1312 1.6878 29 1 1.0931 -9.0491 3.5040 30 1 2.4704 -9.9323 3.1226 31 1 3.2023 -3.3760 0.3712 32 1 2.3269 -4.0913 -1.0112 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001639946193.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:15:58 Heat of formation + Delta-G solvation = -149.448739 kcal Electronic energy + Delta-G solvation = -17751.729960 eV Core-core repulsion = 14711.050451 eV Total energy + Delta-G solvation = -3040.679509 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 242.110 amu Computer time = 1.50 seconds Orbital eigenvalues (eV) -41.34624 -40.04214 -38.60768 -36.07525 -34.60903 -34.14191 -32.15636 -30.74308 -29.78015 -26.91390 -24.06790 -22.33907 -21.35880 -20.14198 -19.20311 -18.42794 -18.11660 -17.18005 -16.93383 -16.87531 -16.36746 -15.89538 -15.71320 -14.93247 -14.81859 -14.40010 -13.87963 -13.78149 -13.30270 -13.22009 -13.11277 -12.88320 -12.64499 -12.40883 -12.27380 -11.96032 -11.27990 -11.18913 -10.66947 -10.56683 -10.50883 -10.11564 -9.55883 -8.25502 -6.39324 1.42887 1.44963 1.51946 1.64619 1.76055 1.91948 2.39669 2.76520 3.00153 3.46623 3.87574 4.04453 4.11920 4.32358 4.34773 4.44261 4.53073 4.62725 4.74402 4.95578 5.22253 5.29434 5.49301 5.56564 5.77662 5.98449 6.07732 6.53659 6.61192 6.69870 7.23361 7.31778 7.46712 7.49803 8.80693 Molecular weight = 242.11amu Principal moments of inertia in cm(-1) A = 0.050482 B = 0.005453 C = 0.005263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 554.522615 B = 5133.231462 C = 5318.521287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.040 3.960 3 Si 0.958 3.042 4 H -0.280 1.280 5 H -0.275 1.275 6 H -0.273 1.273 7 C -0.567 4.567 8 H 0.048 0.952 9 C 0.235 3.765 10 O -0.595 6.595 11 C -0.130 4.130 12 C 0.103 3.897 13 N -0.614 5.614 14 C 0.509 3.491 15 O -0.569 6.569 16 C -0.148 4.148 17 C 0.511 3.489 18 N -0.832 5.832 19 O -0.569 6.569 20 C 0.128 3.872 21 H 0.274 0.726 22 H 0.383 0.617 23 H 0.060 0.940 24 H 0.078 0.922 25 H 0.076 0.924 26 H 0.114 0.886 27 H 0.163 0.837 28 H 0.161 0.839 29 H 0.421 0.579 30 H 0.408 0.592 31 H 0.052 0.948 32 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.358 -11.073 10.091 16.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.161 4.161 3 Si 0.783 3.217 4 H -0.206 1.206 5 H -0.200 1.200 6 H -0.198 1.198 7 C -0.605 4.605 8 H 0.067 0.933 9 C 0.195 3.805 10 O -0.406 6.406 11 C -0.169 4.169 12 C -0.018 4.018 13 N -0.349 5.349 14 C 0.298 3.702 15 O -0.447 6.447 16 C -0.189 4.189 17 C 0.295 3.705 18 N -0.398 5.398 19 O -0.447 6.447 20 C 0.005 3.995 21 H 0.083 0.917 22 H 0.234 0.766 23 H 0.078 0.922 24 H 0.097 0.903 25 H 0.095 0.905 26 H 0.132 0.868 27 H 0.181 0.819 28 H 0.178 0.822 29 H 0.253 0.747 30 H 0.239 0.761 31 H 0.071 0.929 32 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -4.951 -11.629 9.288 15.685 hybrid contribution 0.214 1.373 -0.057 1.391 sum -4.737 -10.256 9.230 14.589 Atomic orbital electron populations 1.69599 1.06454 1.28606 1.49909 1.25538 0.95873 1.01782 0.92919 0.85622 0.78552 0.78978 0.78514 1.20585 1.19972 1.19837 1.21751 0.93401 0.92069 1.53292 0.93324 1.19589 0.86571 0.90254 0.84131 1.86085 1.51481 1.53038 1.49946 1.23138 1.01457 0.93605 0.98652 1.22643 0.84131 0.94574 1.00461 1.48732 1.23206 1.16026 1.46888 1.20684 0.85331 0.81325 0.82837 1.90807 1.24008 1.75811 1.54068 1.21619 1.01357 0.92666 1.03298 1.20410 0.85677 0.85691 0.78764 1.43578 1.27646 1.19155 1.49438 1.90897 1.25503 1.81146 1.47128 1.21745 0.96845 0.88384 0.92531 0.91663 0.76585 0.92165 0.90338 0.90538 0.86812 0.81943 0.82153 0.74664 0.76099 0.92924 0.94581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -45.48 10.70 21.44 0.23 -45.25 16 2 C 0.04 2.05 5.28 84.66 0.45 2.49 16 3 Si 0.96 41.22 29.54 68.60 2.03 43.25 16 4 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 5 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 6 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 7 C -0.57 -30.22 8.22 25.60 0.21 -30.01 16 8 H 0.05 2.66 7.53 -2.91 -0.02 2.64 16 9 C 0.23 11.38 0.85 -10.35 -0.01 11.38 16 10 O -0.60 -30.25 13.08 -148.98 -1.95 -32.19 16 11 C -0.13 -5.22 5.69 32.06 0.18 -5.04 16 12 C 0.10 3.14 6.69 86.93 0.58 3.72 16 13 N -0.61 -23.26 3.32 -811.34 -2.70 -25.96 16 14 C 0.51 18.76 7.84 87.66 0.69 19.45 16 15 O -0.57 -27.77 14.51 20.40 0.30 -27.48 16 16 C -0.15 -3.06 5.19 29.10 0.15 -2.91 16 17 C 0.51 12.82 8.09 87.66 0.71 13.53 16 18 N -0.83 -10.36 8.87 -173.54 -1.54 -11.90 16 19 O -0.57 -22.74 15.02 20.42 0.31 -22.43 16 20 C 0.13 6.05 6.22 86.73 0.54 6.59 16 21 H 0.27 13.05 8.31 -92.71 -0.77 12.28 16 22 H 0.38 19.48 6.98 -74.06 -0.52 18.96 16 23 H 0.06 2.48 8.05 -2.38 -0.02 2.46 16 24 H 0.08 3.25 7.78 -2.39 -0.02 3.23 16 25 H 0.08 2.18 8.14 -2.38 -0.02 2.16 16 26 H 0.11 2.28 7.49 -2.38 -0.02 2.26 16 27 H 0.16 2.00 7.86 -2.38 -0.02 1.98 16 28 H 0.16 2.05 8.14 -2.39 -0.02 2.03 16 29 H 0.42 1.50 8.83 -92.71 -0.82 0.68 16 30 H 0.41 4.67 8.93 -92.70 -0.83 3.84 16 31 H 0.05 2.62 7.63 -2.38 -0.02 2.60 16 32 H 0.04 1.82 8.07 -2.39 -0.02 1.81 16 Total: -1.00 -78.07 274.18 -0.81 -78.89 By element: Atomic # 1 Polarization: 24.87 SS G_CDS: -0.99 Total: 23.88 kcal Atomic # 6 Polarization: 15.70 SS G_CDS: 3.50 Total: 19.20 kcal Atomic # 7 Polarization: -79.10 SS G_CDS: -4.01 Total: -83.11 kcal Atomic # 8 Polarization: -80.76 SS G_CDS: -1.35 Total: -82.10 kcal Atomic # 14 Polarization: 41.22 SS G_CDS: 2.03 Total: 43.25 kcal Total: -78.07 -0.81 -78.89 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001639946193.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.561 kcal (2) G-P(sol) polarization free energy of solvation -78.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.888 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.50 seconds