Wall clock time and date at job start Thu Apr 9 2020 12:16:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.30299 * 126.34508 * 2 1 4 4 N 1.28529 * 110.07971 * 179.76577 * 3 2 1 5 5 C 1.31283 * 109.85638 * 0.39493 * 4 3 2 6 6 S 1.76198 * 126.48179 * 179.88129 * 5 4 3 7 7 C 1.81003 * 100.00093 * 359.68773 * 6 5 4 8 8 H 1.09000 * 109.46909 * 55.00336 * 7 6 5 9 9 C 1.52996 * 109.46962 * 294.99792 * 7 6 5 10 10 C 1.52996 * 109.46938 * 174.99964 * 7 6 5 11 11 C 1.50702 * 109.47159 * 294.99833 * 10 7 6 12 12 H 1.08002 * 120.00299 * 0.02562 * 11 10 7 13 13 C 1.37884 * 119.99942 * 179.72211 * 11 10 7 14 14 N 1.31514 * 119.99985 * 180.27663 * 13 11 10 15 15 Si 1.86800 * 119.99777 * 0.28166 * 13 11 10 16 16 H 1.48498 * 109.47109 * 89.99834 * 15 13 11 17 17 H 1.48507 * 109.46754 * 209.99574 * 15 13 11 18 18 H 1.48498 * 109.47278 * 329.99405 * 15 13 11 19 19 N 1.36540 * 107.03158 * 359.61694 * 5 4 3 20 20 N 1.36598 * 127.14259 * 180.22471 * 19 5 4 21 21 H 1.09000 * 109.47063 * 270.00157 * 1 2 3 22 22 H 1.09001 * 109.47058 * 29.99241 * 1 2 3 23 23 H 1.08999 * 109.47573 * 149.99358 * 1 2 3 24 24 H 1.09000 * 109.46774 * 180.02562 * 9 7 6 25 25 H 1.08993 * 109.47136 * 300.00175 * 9 7 6 26 26 H 1.09001 * 109.47101 * 60.00309 * 9 7 6 27 27 H 1.09004 * 109.47066 * 175.00036 * 10 7 6 28 28 H 1.08994 * 109.47405 * 54.99867 * 10 7 6 29 29 H 0.96996 * 119.99730 * 180.02562 * 14 13 11 30 30 H 1.00894 * 111.00009 * 90.00266 * 20 19 5 31 31 H 1.00898 * 111.00188 * 213.95945 * 20 19 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2791 1.0495 0.0000 4 7 3.5130 0.6895 0.0049 5 6 3.5952 -0.6207 -0.0001 6 16 5.0748 -1.5775 0.0006 7 6 6.3067 -0.2514 0.0002 8 1 6.1220 0.4164 0.8417 9 6 6.2074 0.5364 -1.3076 10 6 7.7066 -0.8557 0.1265 11 6 7.8445 -1.5276 1.4684 12 1 7.0164 -1.5242 2.1617 13 6 9.0258 -2.1519 1.8087 14 7 9.1444 -2.7429 2.9776 15 14 10.4580 -2.1582 0.6093 16 1 11.3088 -0.9648 0.8481 17 1 11.2647 -3.3891 0.8083 18 1 9.9390 -2.1260 -0.7816 19 7 2.3173 -1.1017 -0.0001 20 7 1.9290 -2.4113 -0.0002 21 1 -0.3633 0.0000 1.0277 22 1 -0.3633 0.8901 -0.5137 23 1 -0.3634 -0.8899 -0.5139 24 1 6.9496 1.3347 -1.3080 25 1 6.3921 -0.1314 -2.1489 26 1 5.2101 0.9670 -1.3975 27 1 8.4526 -0.0661 0.0372 28 1 7.8581 -1.5900 -0.6646 29 1 9.9755 -3.1818 3.2170 30 1 1.8262 -2.7580 0.9417 31 1 1.0771 -2.5358 -0.5263 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001640651803.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:16:05 Heat of formation + Delta-G solvation = 91.308519 kcal Electronic energy + Delta-G solvation = -15116.647171 eV Core-core repulsion = 12561.453302 eV Total energy + Delta-G solvation = -2555.193869 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 242.090 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.78358 -36.46166 -34.67381 -32.51479 -32.03241 -29.71927 -28.28014 -27.41803 -23.09561 -22.61876 -21.57145 -20.41683 -18.23638 -17.50179 -16.75917 -16.43698 -15.22981 -15.00952 -14.41143 -14.09516 -13.36760 -13.07656 -12.95715 -12.54312 -12.35832 -11.93701 -11.72623 -11.27084 -11.17295 -11.03684 -10.61412 -10.41567 -9.98200 -9.72095 -9.67410 -9.52458 -9.37904 -9.23589 -8.56198 -7.03669 -6.05962 -4.05054 1.55523 1.71833 2.35220 2.86937 2.89511 3.30186 3.37955 3.40553 4.00182 4.43062 4.45733 4.89227 5.10930 5.28052 5.39581 5.48815 5.64386 5.72556 5.77723 5.99373 6.06811 6.36528 6.47632 6.48235 6.72715 7.02184 7.18501 7.41919 7.68352 8.48428 8.75179 9.00082 9.54676 11.06703 Molecular weight = 242.09amu Principal moments of inertia in cm(-1) A = 0.043868 B = 0.005977 C = 0.005618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 638.118855 B = 4683.653396 C = 4982.918780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C 0.127 3.873 3 N -0.275 5.275 4 N -0.297 5.297 5 C 0.193 3.807 6 S 0.054 5.946 7 C -0.060 4.060 8 H 0.096 0.904 9 C -0.150 4.150 10 C 0.001 3.999 11 C -0.524 4.524 12 H 0.081 0.919 13 C 0.072 3.928 14 N -0.898 5.898 15 Si 0.874 3.126 16 H -0.276 1.276 17 H -0.287 1.287 18 H -0.264 1.264 19 N -0.316 5.316 20 N -0.582 5.582 21 H 0.083 0.917 22 H 0.097 0.903 23 H 0.071 0.929 24 H 0.062 0.938 25 H 0.055 0.945 26 H 0.066 0.934 27 H 0.035 0.965 28 H 0.026 0.974 29 H 0.264 0.736 30 H 0.366 0.634 31 H 0.370 0.630 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.989 1.131 -7.412 17.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.145 4.145 3 N -0.116 5.116 4 N -0.142 5.142 5 C -0.180 4.180 6 S 0.284 5.716 7 C -0.189 4.189 8 H 0.114 0.886 9 C -0.209 4.209 10 C -0.038 4.038 11 C -0.562 4.562 12 H 0.099 0.901 13 C -0.130 4.130 14 N -0.536 5.536 15 Si 0.701 3.299 16 H -0.202 1.202 17 H -0.213 1.213 18 H -0.189 1.189 19 N -0.101 5.101 20 N -0.213 5.213 21 H 0.101 0.899 22 H 0.115 0.885 23 H 0.090 0.910 24 H 0.080 0.920 25 H 0.074 0.926 26 H 0.085 0.915 27 H 0.053 0.947 28 H 0.044 0.956 29 H 0.073 0.927 30 H 0.184 0.816 31 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -14.605 1.135 -7.648 16.526 hybrid contribution -0.719 0.023 0.069 0.723 sum -15.325 1.158 -7.579 17.136 Atomic orbital electron populations 1.20126 0.83891 1.04311 1.03748 1.25353 0.96878 0.83578 1.08644 1.73903 0.96998 1.23577 1.17106 1.74830 1.10821 1.06166 1.22410 1.27591 0.90801 0.95092 1.04502 1.86316 0.87029 1.08205 1.90084 1.23459 0.97481 0.96795 1.01201 0.88582 1.22156 1.02788 0.99939 0.96022 1.19556 0.88924 0.96498 0.98859 1.21151 1.00888 1.34329 0.99867 0.90090 1.24974 0.98361 0.94700 0.94977 1.69904 1.26665 1.36159 1.20865 0.86868 0.82889 0.77739 0.82420 1.20158 1.21268 1.18870 1.45046 1.05491 1.01879 1.57649 1.59547 1.42269 0.97715 1.21805 0.89853 0.88466 0.91041 0.91954 0.92607 0.91488 0.94685 0.95575 0.92664 0.81614 0.81288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.48 10.36 36.00 0.37 -0.10 16 2 C 0.13 1.75 8.13 -153.99 -1.25 0.50 16 3 N -0.27 -4.90 12.17 32.99 0.40 -4.50 16 4 N -0.30 -5.83 9.76 30.68 0.30 -5.53 16 5 C 0.19 3.55 7.88 -88.34 -0.70 2.86 16 6 S 0.05 1.05 21.02 -107.50 -2.26 -1.21 16 7 C -0.06 -1.24 2.29 -26.74 -0.06 -1.30 16 8 H 0.10 2.11 8.14 -51.92 -0.42 1.68 16 9 C -0.15 -2.68 9.01 37.16 0.33 -2.35 16 10 C 0.00 0.02 3.51 -27.88 -0.10 -0.08 16 11 C -0.52 -14.53 9.09 -34.44 -0.31 -14.84 16 12 H 0.08 2.43 7.84 -52.49 -0.41 2.02 16 13 C 0.07 2.05 5.47 -17.82 -0.10 1.95 16 14 N -0.90 -27.25 13.96 55.43 0.77 -26.47 16 15 Si 0.87 21.24 27.47 -169.99 -4.67 16.57 16 16 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 17 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 18 H -0.26 -6.15 6.54 56.52 0.37 -5.78 16 19 N -0.32 -4.59 3.81 -9.93 -0.04 -4.63 16 20 N -0.58 -6.03 10.41 60.35 0.63 -5.40 16 21 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 22 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 23 H 0.07 0.35 7.41 -51.93 -0.38 -0.03 16 24 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 25 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 26 H 0.07 1.22 5.92 -51.93 -0.31 0.91 16 27 H 0.04 0.80 7.58 -51.93 -0.39 0.41 16 28 H 0.03 0.61 7.19 -51.93 -0.37 0.24 16 29 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 30 H 0.37 3.13 9.21 -181.37 -1.67 1.46 16 31 H 0.37 2.43 8.27 -181.37 -1.50 0.93 16 LS Contribution 277.52 15.07 4.18 4.18 Total: -1.00 -33.75 277.52 -8.81 -42.56 By element: Atomic # 1 Polarization: 4.10 SS G_CDS: -6.32 Total: -2.22 kcal Atomic # 6 Polarization: -11.55 SS G_CDS: -1.81 Total: -13.36 kcal Atomic # 7 Polarization: -48.59 SS G_CDS: 2.06 Total: -46.52 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -4.67 Total: 16.57 kcal Atomic # 16 Polarization: 1.05 SS G_CDS: -2.26 Total: -1.21 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -33.75 -8.81 -42.56 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001640651803.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.870 kcal (2) G-P(sol) polarization free energy of solvation -33.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.561 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds