Wall clock time and date at job start Thu Apr 9 2020 12:16:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.30299 * 126.34508 * 2 1 4 4 N 1.28529 * 110.07971 * 179.76577 * 3 2 1 5 5 C 1.31283 * 109.85638 * 0.39493 * 4 3 2 6 6 S 1.76198 * 126.48179 * 179.88129 * 5 4 3 7 7 C 1.81003 * 100.00093 * 359.68773 * 6 5 4 8 8 H 1.09000 * 109.46909 * 55.00336 * 7 6 5 9 9 C 1.52996 * 109.46962 * 294.99792 * 7 6 5 10 10 C 1.52996 * 109.46938 * 174.99964 * 7 6 5 11 11 C 1.50702 * 109.47159 * 294.99833 * 10 7 6 12 12 H 1.08002 * 120.00299 * 0.02562 * 11 10 7 13 13 C 1.37884 * 119.99942 * 179.72211 * 11 10 7 14 14 N 1.31514 * 119.99985 * 180.27663 * 13 11 10 15 15 Si 1.86800 * 119.99777 * 0.28166 * 13 11 10 16 16 H 1.48498 * 109.47109 * 89.99834 * 15 13 11 17 17 H 1.48507 * 109.46754 * 209.99574 * 15 13 11 18 18 H 1.48498 * 109.47278 * 329.99405 * 15 13 11 19 19 N 1.36540 * 107.03158 * 359.61694 * 5 4 3 20 20 N 1.36598 * 127.14259 * 180.22471 * 19 5 4 21 21 H 1.09000 * 109.47063 * 270.00157 * 1 2 3 22 22 H 1.09001 * 109.47058 * 29.99241 * 1 2 3 23 23 H 1.08999 * 109.47573 * 149.99358 * 1 2 3 24 24 H 1.09000 * 109.46774 * 180.02562 * 9 7 6 25 25 H 1.08993 * 109.47136 * 300.00175 * 9 7 6 26 26 H 1.09001 * 109.47101 * 60.00309 * 9 7 6 27 27 H 1.09004 * 109.47066 * 175.00036 * 10 7 6 28 28 H 1.08994 * 109.47405 * 54.99867 * 10 7 6 29 29 H 0.96996 * 119.99730 * 180.02562 * 14 13 11 30 30 H 1.00894 * 111.00009 * 90.00266 * 20 19 5 31 31 H 1.00898 * 111.00188 * 213.95945 * 20 19 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2791 1.0495 0.0000 4 7 3.5130 0.6895 0.0049 5 6 3.5952 -0.6207 -0.0001 6 16 5.0748 -1.5775 0.0006 7 6 6.3067 -0.2514 0.0002 8 1 6.1220 0.4164 0.8417 9 6 6.2074 0.5364 -1.3076 10 6 7.7066 -0.8557 0.1265 11 6 7.8445 -1.5276 1.4684 12 1 7.0164 -1.5242 2.1617 13 6 9.0258 -2.1519 1.8087 14 7 9.1444 -2.7429 2.9776 15 14 10.4580 -2.1582 0.6093 16 1 11.3088 -0.9648 0.8481 17 1 11.2647 -3.3891 0.8083 18 1 9.9390 -2.1260 -0.7816 19 7 2.3173 -1.1017 -0.0001 20 7 1.9290 -2.4113 -0.0002 21 1 -0.3633 0.0000 1.0277 22 1 -0.3633 0.8901 -0.5137 23 1 -0.3634 -0.8899 -0.5139 24 1 6.9496 1.3347 -1.3080 25 1 6.3921 -0.1314 -2.1489 26 1 5.2101 0.9670 -1.3975 27 1 8.4526 -0.0661 0.0372 28 1 7.8581 -1.5900 -0.6646 29 1 9.9755 -3.1818 3.2170 30 1 1.8262 -2.7580 0.9417 31 1 1.0771 -2.5358 -0.5263 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001640651803.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:16:05 Heat of formation + Delta-G solvation = 68.542338 kcal Electronic energy + Delta-G solvation = -15117.634387 eV Core-core repulsion = 12561.453302 eV Total energy + Delta-G solvation = -2556.181085 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 242.090 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -44.01077 -37.56047 -36.46360 -34.19222 -33.40937 -30.81020 -29.97891 -28.57450 -24.95789 -23.92885 -22.76112 -22.04113 -19.40752 -18.89004 -18.51631 -17.79908 -16.66012 -16.35390 -16.21039 -15.22536 -14.83254 -14.26297 -14.14867 -13.96952 -13.68340 -13.46352 -13.32903 -12.80459 -12.65133 -12.38136 -12.29031 -11.82373 -11.71888 -11.55128 -11.39407 -11.04360 -10.87868 -10.70742 -10.50059 -8.53017 -8.23561 -6.28508 0.17601 0.52363 1.22621 1.32816 1.40346 1.41860 1.52803 1.61568 2.39573 3.11282 3.17287 3.59902 4.01358 4.11054 4.19332 4.30794 4.51839 4.55759 4.58088 4.82622 4.89283 4.96667 5.05392 5.11674 5.27625 5.36177 5.61820 5.70618 6.29832 6.43722 6.77987 7.34579 7.48593 8.91923 Molecular weight = 242.09amu Principal moments of inertia in cm(-1) A = 0.043868 B = 0.005977 C = 0.005618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 638.118855 B = 4683.653396 C = 4982.918780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.152 3.848 3 N -0.321 5.321 4 N -0.323 5.323 5 C 0.173 3.827 6 S 0.033 5.967 7 C -0.056 4.056 8 H 0.073 0.927 9 C -0.139 4.139 10 C 0.005 3.995 11 C -0.526 4.526 12 H 0.041 0.959 13 C 0.011 3.989 14 N -0.948 5.948 15 Si 0.942 3.058 16 H -0.267 1.267 17 H -0.286 1.286 18 H -0.243 1.243 19 N -0.313 5.313 20 N -0.583 5.583 21 H 0.103 0.897 22 H 0.106 0.894 23 H 0.107 0.893 24 H 0.076 0.924 25 H 0.068 0.932 26 H 0.062 0.938 27 H 0.046 0.954 28 H 0.033 0.967 29 H 0.266 0.734 30 H 0.378 0.622 31 H 0.392 0.608 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.249 1.022 -9.291 19.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.119 4.119 3 N -0.162 5.162 4 N -0.168 5.168 5 C -0.203 4.203 6 S 0.262 5.738 7 C -0.185 4.185 8 H 0.091 0.909 9 C -0.198 4.198 10 C -0.034 4.034 11 C -0.565 4.565 12 H 0.059 0.941 13 C -0.186 4.186 14 N -0.588 5.588 15 Si 0.765 3.235 16 H -0.192 1.192 17 H -0.212 1.212 18 H -0.166 1.166 19 N -0.095 5.095 20 N -0.220 5.220 21 H 0.122 0.878 22 H 0.125 0.875 23 H 0.126 0.874 24 H 0.094 0.906 25 H 0.087 0.913 26 H 0.081 0.919 27 H 0.064 0.936 28 H 0.051 0.949 29 H 0.074 0.926 30 H 0.198 0.802 31 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges -15.910 1.037 -9.543 18.582 hybrid contribution -0.579 0.039 0.728 0.931 sum -16.490 1.076 -8.815 18.729 Atomic orbital electron populations 1.20503 0.79314 1.06602 1.05715 1.26484 0.98913 0.82324 1.04228 1.73840 0.96841 1.25490 1.20029 1.74720 1.12311 1.07005 1.22721 1.27168 0.91539 0.94963 1.06591 1.86113 0.88165 1.08346 1.91188 1.23269 0.96467 0.96800 1.01997 0.90882 1.22057 1.03005 1.00087 0.94625 1.19466 0.91003 0.96591 0.96331 1.21364 0.99700 1.34310 1.01104 0.94097 1.25901 1.01570 0.94323 0.96836 1.70059 1.27712 1.37783 1.23253 0.85778 0.78976 0.77939 0.80767 1.19164 1.21155 1.16604 1.45064 1.04382 1.03599 1.56448 1.59575 1.43886 0.95315 1.23178 0.87837 0.87489 0.87429 0.90561 0.91297 0.91933 0.93610 0.94860 0.92553 0.80238 0.78658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.72 10.36 71.23 0.74 0.01 16 2 C 0.15 3.90 8.13 137.63 1.12 5.02 16 3 N -0.32 -11.27 12.17 -49.53 -0.60 -11.87 16 4 N -0.32 -12.75 9.76 -56.85 -0.55 -13.30 16 5 C 0.17 6.33 7.88 179.55 1.41 7.75 16 6 S 0.03 1.29 21.02 -56.49 -1.19 0.11 16 7 C -0.06 -2.32 2.29 30.59 0.07 -2.25 16 8 H 0.07 3.33 8.14 -2.40 -0.02 3.31 16 9 C -0.14 -4.83 9.01 71.98 0.65 -4.18 16 10 C 0.01 0.23 3.51 29.85 0.10 0.34 16 11 C -0.53 -29.85 9.09 25.60 0.23 -29.61 16 12 H 0.04 2.58 7.84 -2.91 -0.02 2.56 16 13 C 0.01 0.63 5.47 84.66 0.46 1.09 16 14 N -0.95 -59.05 13.96 21.45 0.30 -58.75 16 15 Si 0.94 43.38 27.47 68.60 1.88 45.26 16 16 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 17 H -0.29 -13.02 7.11 99.48 0.71 -12.31 16 18 H -0.24 -10.26 6.54 99.48 0.65 -9.61 16 19 N -0.31 -8.59 3.81 -185.33 -0.71 -9.29 16 20 N -0.58 -10.72 10.41 37.02 0.39 -10.33 16 21 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16 22 H 0.11 1.13 8.14 -2.39 -0.02 1.11 16 23 H 0.11 0.51 7.41 -2.39 -0.02 0.50 16 24 H 0.08 2.40 8.14 -2.39 -0.02 2.38 16 25 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 26 H 0.06 2.25 5.92 -2.39 -0.01 2.24 16 27 H 0.05 2.03 7.58 -2.38 -0.02 2.01 16 28 H 0.03 1.50 7.19 -2.39 -0.02 1.49 16 29 H 0.27 15.46 8.31 -92.71 -0.77 14.69 16 30 H 0.38 5.64 9.21 -210.56 -1.94 3.71 16 31 H 0.39 3.77 8.27 -210.56 -1.74 2.03 16 Total: -1.00 -75.70 277.52 1.73 -73.97 By element: Atomic # 1 Polarization: 8.61 SS G_CDS: -2.57 Total: 6.04 kcal Atomic # 6 Polarization: -26.62 SS G_CDS: 4.79 Total: -21.83 kcal Atomic # 7 Polarization: -102.37 SS G_CDS: -1.18 Total: -103.55 kcal Atomic # 14 Polarization: 43.38 SS G_CDS: 1.88 Total: 45.26 kcal Atomic # 16 Polarization: 1.29 SS G_CDS: -1.19 Total: 0.11 kcal Total: -75.70 1.73 -73.97 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001640651803.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.513 kcal (2) G-P(sol) polarization free energy of solvation -75.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.970 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds