Wall clock time and date at job start Thu Apr 9 2020 12:16:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.34363 * 125.82572 * 2 1 4 4 C 1.31266 * 109.30021 * 180.14880 * 3 2 1 5 5 S 1.76208 * 125.80060 * 179.83401 * 4 3 2 6 6 C 1.80998 * 99.99889 * 359.68923 * 5 4 3 7 7 C 1.52996 * 109.47161 * 179.97438 * 6 5 4 8 8 H 1.09004 * 109.47066 * 60.00373 * 7 6 5 9 9 O 1.42903 * 109.47446 * 300.00249 * 7 6 5 10 10 C 1.50702 * 109.47159 * 180.02562 * 7 6 5 11 11 H 1.08002 * 120.00299 * 0.02562 * 10 7 6 12 12 C 1.37884 * 119.99942 * 179.72211 * 10 7 6 13 13 N 1.31514 * 119.99985 * 180.27663 * 12 10 7 14 14 Si 1.86800 * 119.99777 * 0.28166 * 12 10 7 15 15 H 1.48498 * 109.47109 * 89.99834 * 14 12 10 16 16 H 1.48507 * 109.46754 * 209.99574 * 14 12 10 17 17 H 1.48498 * 109.47278 * 329.99405 * 14 12 10 18 18 N 1.36104 * 108.39871 * 359.57111 * 4 3 2 19 19 H 0.97000 * 126.50685 * 180.24247 * 18 4 3 20 20 C 1.34383 * 125.82746 * 179.67008 * 2 1 3 21 21 C 1.50706 * 126.51951 * 0.02562 * 20 2 1 22 22 H 1.08993 * 109.47401 * 270.33160 * 1 2 3 23 23 H 1.09005 * 109.46635 * 30.33171 * 1 2 3 24 24 H 1.08999 * 109.46881 * 150.32391 * 1 2 3 25 25 H 1.09004 * 109.46826 * 60.00137 * 6 5 4 26 26 H 1.09000 * 109.47766 * 300.00468 * 6 5 4 27 27 H 0.96697 * 113.99557 * 300.00558 * 9 7 6 28 28 H 0.96996 * 119.99730 * 180.02562 * 13 12 10 29 29 H 1.08996 * 109.47284 * 270.00100 * 21 20 2 30 30 H 1.09006 * 109.46617 * 30.00547 * 21 20 2 31 31 H 1.09002 * 109.46800 * 149.99758 * 21 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2935 1.0894 0.0000 4 6 3.5520 0.7160 -0.0032 5 16 4.9466 1.7930 -0.0087 6 6 4.1060 3.3958 -0.0179 7 6 5.1465 4.5175 -0.0231 8 1 5.7710 4.4296 -0.9122 9 8 5.9635 4.4148 1.1449 10 6 4.4466 5.8520 -0.0301 11 1 3.3674 5.8959 -0.0304 12 6 5.1838 7.0172 -0.0298 13 7 4.5730 8.1819 -0.0305 14 14 7.0503 6.9414 -0.0287 15 1 7.5457 6.9210 -1.4285 16 1 7.5936 8.1330 0.6714 17 1 7.4953 5.7100 0.6719 18 7 3.5965 -0.6443 0.0043 19 1 4.3946 -1.1955 0.0073 20 6 2.2937 -1.0895 0.0063 21 6 1.8367 -2.5256 0.0140 22 1 -0.3634 0.0059 1.0276 23 1 -0.3633 0.8871 -0.5190 24 1 -0.3633 -0.8929 -0.5088 25 1 3.4818 3.4839 0.8714 26 1 3.4824 3.4741 -0.9085 27 1 5.4730 4.4844 1.9753 28 1 5.0917 9.0015 -0.0307 29 1 1.7261 -2.8662 1.0435 30 1 0.8786 -2.6047 -0.4999 31 1 2.5748 -3.1445 -0.4962 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001641148610.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:16:13 Heat of formation + Delta-G solvation = -6.376563 kcal Electronic energy + Delta-G solvation = -14820.236148 eV Core-core repulsion = 12228.513585 eV Total energy + Delta-G solvation = -2591.722563 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 242.083 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.75090 -36.33902 -33.04663 -32.64482 -32.29784 -30.00895 -28.52824 -25.93463 -25.30328 -21.89261 -20.82325 -19.60229 -18.14838 -17.42236 -15.75511 -15.49223 -14.91617 -14.44648 -14.42342 -13.92158 -13.36735 -13.09827 -12.94843 -12.87102 -12.76450 -12.51399 -12.13566 -11.74326 -11.59311 -11.05358 -10.63847 -10.21747 -9.96288 -9.84040 -9.81385 -9.10117 -8.86257 -8.68469 -8.41165 -7.03465 -6.16359 -4.29438 1.59110 1.94614 2.69941 3.07977 3.35255 3.37930 3.47411 3.72793 4.50372 4.77161 4.93003 5.01818 5.16223 5.26006 5.30115 5.60903 5.72574 5.73097 5.83673 5.85663 5.93233 6.00429 6.18717 6.60128 6.78509 7.15678 7.24953 7.44911 8.03753 8.23989 8.76197 8.94704 9.45673 10.93712 Molecular weight = 242.08amu Principal moments of inertia in cm(-1) A = 0.048430 B = 0.005324 C = 0.004883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 578.013686 B = 5257.757728 C = 5733.203480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C 0.010 3.990 3 N -0.483 5.483 4 C 0.205 3.795 5 S -0.039 6.039 6 C -0.093 4.093 7 C 0.208 3.792 8 H 0.064 0.936 9 O -0.577 6.577 10 C -0.560 4.560 11 H 0.077 0.923 12 C 0.087 3.913 13 N -0.888 5.888 14 Si 0.869 3.131 15 H -0.286 1.286 16 H -0.294 1.294 17 H -0.216 1.216 18 N -0.559 5.559 19 H 0.418 0.582 20 C -0.033 4.033 21 C -0.071 4.071 22 H 0.066 0.934 23 H 0.070 0.930 24 H 0.066 0.934 25 H 0.089 0.911 26 H 0.094 0.906 27 H 0.360 0.640 28 H 0.267 0.733 29 H 0.070 0.930 30 H 0.081 0.919 31 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.318 -19.786 0.587 20.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.121 4.121 3 N -0.206 5.206 4 C -0.166 4.166 5 S 0.192 5.808 6 C -0.242 4.242 7 C 0.148 3.852 8 H 0.082 0.918 9 O -0.383 6.383 10 C -0.599 4.599 11 H 0.095 0.905 12 C -0.118 4.118 13 N -0.525 5.525 14 Si 0.695 3.305 15 H -0.212 1.212 16 H -0.220 1.220 17 H -0.139 1.139 18 N -0.166 5.166 19 H 0.256 0.744 20 C -0.150 4.150 21 C -0.129 4.129 22 H 0.085 0.915 23 H 0.089 0.911 24 H 0.085 0.915 25 H 0.108 0.892 26 H 0.112 0.888 27 H 0.207 0.793 28 H 0.076 0.924 29 H 0.089 0.911 30 H 0.100 0.900 31 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -1.993 -19.105 0.148 19.209 hybrid contribution -0.299 -0.542 0.267 0.674 sum -2.292 -19.647 0.415 19.785 Atomic orbital electron populations 1.20035 0.87744 1.02492 1.02093 1.20549 0.96392 0.88075 1.07070 1.70771 0.98739 1.29861 1.21250 1.25467 0.98776 0.84783 1.07612 1.85698 1.01902 1.00304 1.92849 1.24494 1.02607 0.90323 1.06789 1.19627 0.88030 0.91160 0.86357 0.91786 1.86695 1.39370 1.95758 1.16459 1.21338 0.95432 0.88434 1.54739 0.90496 1.24958 0.99664 0.94836 0.92363 1.69940 1.36664 0.97700 1.48153 0.87049 0.85219 0.79686 0.78548 1.21220 1.22045 1.13850 1.43221 1.07947 1.06547 1.58919 0.74353 1.21041 0.83397 0.97148 1.13426 1.20175 1.01656 0.88613 1.02495 0.91483 0.91079 0.91547 0.89193 0.88757 0.79306 0.92387 0.91108 0.90034 0.91920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.75 10.21 36.01 0.37 -0.38 16 2 C 0.01 0.15 7.07 -82.84 -0.59 -0.43 16 3 N -0.48 -8.88 10.60 -9.67 -0.10 -8.98 16 4 C 0.21 3.49 8.26 -88.76 -0.73 2.75 16 5 S -0.04 -0.68 21.95 -107.50 -2.36 -3.04 16 6 C -0.09 -1.90 4.83 37.16 0.18 -1.72 16 7 C 0.21 4.81 2.36 -27.88 -0.07 4.75 16 8 H 0.06 1.52 7.58 -51.93 -0.39 1.13 16 9 O -0.58 -12.82 9.72 -35.23 -0.34 -13.16 16 10 C -0.56 -15.41 9.34 -34.44 -0.32 -15.73 16 11 H 0.08 2.29 7.99 -52.49 -0.42 1.87 16 12 C 0.09 2.48 5.47 -17.82 -0.10 2.39 16 13 N -0.89 -26.86 13.96 55.43 0.77 -26.09 16 14 Si 0.87 21.48 26.99 -169.99 -4.59 16.89 16 15 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 16 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 17 H -0.22 -5.21 5.30 56.52 0.30 -4.91 16 18 N -0.56 -7.48 6.24 -8.98 -0.06 -7.53 16 19 H 0.42 4.26 8.96 -40.82 -0.37 3.89 16 20 C -0.03 -0.42 7.25 -81.32 -0.59 -1.01 16 21 C -0.07 -0.56 10.21 36.01 0.37 -0.20 16 22 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 23 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 24 H 0.07 0.57 7.14 -51.93 -0.37 0.20 16 25 H 0.09 1.88 8.14 -51.91 -0.42 1.45 16 26 H 0.09 1.99 8.14 -51.92 -0.42 1.57 16 27 H 0.36 7.14 9.04 45.56 0.41 7.55 16 28 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 29 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.08 0.54 7.14 -51.93 -0.37 0.17 16 31 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 LS Contribution 278.99 15.07 4.20 4.20 Total: -1.00 -32.70 278.99 -7.23 -39.93 By element: Atomic # 1 Polarization: 10.65 SS G_CDS: -3.28 Total: 7.37 kcal Atomic # 6 Polarization: -8.11 SS G_CDS: -1.48 Total: -9.59 kcal Atomic # 7 Polarization: -43.22 SS G_CDS: 0.61 Total: -42.60 kcal Atomic # 8 Polarization: -12.82 SS G_CDS: -0.34 Total: -13.16 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -4.59 Total: 16.89 kcal Atomic # 16 Polarization: -0.68 SS G_CDS: -2.36 Total: -3.04 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -32.70 -7.23 -39.93 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001641148610.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.552 kcal (2) G-P(sol) polarization free energy of solvation -32.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.929 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds