Wall clock time and date at job start Thu Apr 9 2020 12:16:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36758 * 127.14130 * 2 1 4 4 N 1.30303 * 107.31836 * 180.02562 * 3 2 1 5 5 N 1.28519 * 110.07581 * 359.76310 * 4 3 2 6 6 C 1.31288 * 109.86183 * 0.39605 * 5 4 3 7 7 S 1.76193 * 126.48738 * 179.88307 * 6 5 4 8 8 C 1.81002 * 100.00049 * 359.68248 * 7 6 5 9 9 C 1.50701 * 109.47156 * 180.02562 * 8 7 6 10 10 O 1.21294 * 119.99849 * 0.02562 * 9 8 7 11 11 N 1.34780 * 119.99795 * 179.97438 * 9 8 7 12 12 C 1.37101 * 119.99707 * 180.02562 * 11 9 8 13 13 H 1.08002 * 119.99704 * 359.97438 * 12 11 9 14 14 C 1.38941 * 119.99927 * 180.02562 * 12 11 9 15 15 N 1.31417 * 120.00180 * 359.97438 * 14 12 11 16 16 Si 1.86800 * 120.00273 * 180.02562 * 14 12 11 17 17 H 1.48496 * 109.47117 * 59.99412 * 16 14 12 18 18 H 1.48498 * 109.47600 * 179.97438 * 16 14 12 19 19 H 1.48503 * 109.46756 * 300.00019 * 16 14 12 20 20 H 1.09006 * 109.46808 * 269.99482 * 1 2 3 21 21 H 1.08995 * 109.47690 * 29.99195 * 1 2 3 22 22 H 1.09001 * 109.47236 * 150.00216 * 1 2 3 23 23 H 1.07999 * 126.34145 * 0.02562 * 3 2 1 24 24 H 1.09002 * 109.47115 * 60.00094 * 8 7 6 25 25 H 1.09001 * 109.46925 * 300.00251 * 8 7 6 26 26 H 0.96995 * 120.00011 * 0.02562 * 11 9 8 27 27 H 0.97000 * 119.99884 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2907 1.0902 0.0000 4 7 3.5165 0.6483 -0.0006 5 7 3.5222 -0.6369 0.0041 6 6 2.2894 -1.0884 -0.0006 7 16 1.7928 -2.7789 0.0000 8 6 3.4144 -3.5829 -0.0013 9 6 3.2334 -5.0790 -0.0017 10 8 2.1177 -5.5548 -0.0015 11 7 4.3112 -5.8882 -0.0031 12 6 4.1465 -7.2493 -0.0039 13 1 3.1530 -7.6730 -0.0030 14 6 5.2575 -8.0835 -0.0049 15 7 6.4664 -7.5680 -0.0056 16 14 5.0332 -9.9380 -0.0068 17 1 4.2785 -10.3441 -1.2195 18 1 6.3636 -10.5977 -0.0082 19 1 4.2789 -10.3465 1.2055 20 1 -0.3633 -0.0001 1.0277 21 1 -0.3634 0.8900 -0.5137 22 1 -0.3634 -0.8900 -0.5138 23 1 1.9837 2.1256 0.0004 24 1 3.9690 -3.2839 0.8881 25 1 3.9674 -3.2840 -0.8918 26 1 5.2034 -5.5077 -0.0036 27 1 7.2420 -8.1505 -0.0066 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001651627145.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:16:27 Heat of formation + Delta-G solvation = 43.926491 kcal Electronic energy + Delta-G solvation = -14364.664316 eV Core-core repulsion = 11671.582714 eV Total energy + Delta-G solvation = -2693.081603 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 242.058 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.79228 -38.22075 -35.03618 -34.08981 -31.46633 -30.74234 -29.19478 -27.76131 -24.72115 -22.67827 -22.31772 -19.61059 -18.21258 -17.75716 -16.40815 -16.14961 -15.97745 -15.22104 -14.56384 -14.55809 -14.10342 -13.63961 -13.39959 -13.06554 -12.53937 -12.11853 -11.64801 -11.55423 -11.09424 -10.81807 -10.49206 -10.34246 -10.30108 -10.11903 -9.99654 -9.61660 -8.67714 -8.10327 -7.45988 -6.50498 -3.92757 1.21096 1.64176 2.31512 2.59509 2.84272 3.14793 3.22783 3.26873 3.71847 4.10786 4.38087 4.49513 4.80489 4.81818 5.10564 5.14713 5.15951 5.58108 5.63972 5.80809 5.92586 6.12018 6.64352 7.46861 7.91188 8.44295 8.63661 9.04384 9.38225 9.86513 10.66255 Molecular weight = 242.06amu Principal moments of inertia in cm(-1) A = 0.060262 B = 0.004713 C = 0.004385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 464.524978 B = 5939.858286 C = 6383.936652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.472 5.472 3 C 0.147 3.853 4 N -0.290 5.290 5 N -0.299 5.299 6 C 0.147 3.853 7 S 0.075 5.925 8 C -0.125 4.125 9 C 0.450 3.550 10 O -0.587 6.587 11 N -0.544 5.544 12 C -0.305 4.305 13 H 0.106 0.894 14 C 0.026 3.974 15 N -0.894 5.894 16 Si 0.935 3.065 17 H -0.272 1.272 18 H -0.283 1.283 19 H -0.272 1.272 20 H 0.084 0.916 21 H 0.093 0.907 22 H 0.094 0.906 23 H 0.220 0.780 24 H 0.110 0.890 25 H 0.110 0.890 26 H 0.397 0.603 27 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.540 14.105 -0.041 17.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.167 5.167 3 C -0.143 4.143 4 N -0.129 5.129 5 N -0.144 5.144 6 C -0.227 4.227 7 S 0.302 5.698 8 C -0.277 4.277 9 C 0.234 3.766 10 O -0.473 6.473 11 N -0.179 5.179 12 C -0.435 4.435 13 H 0.124 0.876 14 C -0.177 4.177 15 N -0.534 5.534 16 Si 0.761 3.239 17 H -0.197 1.197 18 H -0.208 1.208 19 H -0.197 1.197 20 H 0.103 0.897 21 H 0.112 0.888 22 H 0.113 0.887 23 H 0.236 0.764 24 H 0.129 0.871 25 H 0.128 0.872 26 H 0.231 0.769 27 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -9.640 13.209 -0.037 16.353 hybrid contribution 0.401 0.141 0.002 0.425 sum -9.239 13.350 -0.035 16.235 Atomic orbital electron populations 1.22136 0.74982 1.05394 1.04425 1.46504 1.08864 1.05354 1.55951 1.26640 0.86768 0.94619 1.06316 1.73898 1.18375 1.03510 1.17100 1.74729 1.15791 1.02958 1.20913 1.27734 0.90181 0.97989 1.06788 1.86068 1.09285 0.82635 1.91805 1.23666 0.97594 0.98472 1.07978 1.18895 0.86067 0.85533 0.86138 1.90551 1.23926 1.75778 1.57054 1.41740 1.07186 1.06475 1.62532 1.19704 0.95079 0.80246 1.48439 0.87613 1.25334 0.94525 1.01088 0.96718 1.69614 0.97871 1.36827 1.49074 0.85858 0.77400 0.81439 0.79194 1.19735 1.20838 1.19729 0.89716 0.88835 0.88701 0.76406 0.87134 0.87157 0.76939 0.91494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.50 11.09 59.85 0.66 1.16 15 2 N -0.47 -5.55 3.21 -125.58 -0.40 -5.95 15 3 C 0.15 1.68 12.80 -88.95 -1.14 0.55 15 4 N -0.29 -4.69 12.18 29.90 0.36 -4.33 15 5 N -0.30 -5.36 11.60 30.68 0.36 -5.00 15 6 C 0.15 2.31 8.07 -88.33 -0.71 1.60 15 7 S 0.08 1.25 20.94 -107.50 -2.25 -1.00 15 8 C -0.12 -2.34 5.72 36.01 0.21 -2.13 15 9 C 0.45 10.58 7.80 -10.98 -0.09 10.50 15 10 O -0.59 -15.51 15.44 5.55 0.09 -15.42 15 11 N -0.54 -13.74 5.29 -10.96 -0.06 -13.80 15 12 C -0.31 -8.37 9.68 -14.94 -0.14 -8.52 15 13 H 0.11 3.01 7.16 -52.49 -0.38 2.63 15 14 C 0.03 0.70 5.50 -17.47 -0.10 0.60 15 15 N -0.89 -24.07 13.05 55.50 0.72 -23.34 15 16 Si 0.93 20.66 29.55 -169.99 -5.02 15.64 15 17 H -0.27 -5.97 7.11 56.52 0.40 -5.56 15 18 H -0.28 -6.11 7.11 56.52 0.40 -5.71 15 19 H -0.27 -5.96 7.11 56.52 0.40 -5.56 15 20 H 0.08 0.47 8.14 -51.93 -0.42 0.04 15 21 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 15 22 H 0.09 0.67 7.86 -51.93 -0.41 0.26 15 23 H 0.22 1.32 8.06 -52.49 -0.42 0.90 15 24 H 0.11 1.97 8.14 -51.92 -0.42 1.54 15 25 H 0.11 1.96 8.14 -51.92 -0.42 1.54 15 26 H 0.40 9.63 7.90 -40.82 -0.32 9.31 15 27 H 0.28 7.00 8.31 -40.82 -0.34 6.66 15 LS Contribution 265.09 15.07 3.99 3.99 Total: -1.00 -33.61 265.09 -5.87 -39.49 By element: Atomic # 1 Polarization: 8.32 SS G_CDS: -2.35 Total: 5.97 kcal Atomic # 6 Polarization: 5.06 SS G_CDS: -1.31 Total: 3.76 kcal Atomic # 7 Polarization: -53.40 SS G_CDS: 0.98 Total: -52.42 kcal Atomic # 8 Polarization: -15.51 SS G_CDS: 0.09 Total: -15.42 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.64 kcal Atomic # 16 Polarization: 1.25 SS G_CDS: -2.25 Total: -1.00 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -33.61 -5.87 -39.49 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001651627145.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.415 kcal (2) G-P(sol) polarization free energy of solvation -33.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.874 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.488 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds