Wall clock time and date at job start Thu Apr 9 2020 12:16:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35950 * 117.00298 * 2 1 4 4 N 1.30344 * 121.63852 * 0.26002 * 3 2 1 5 5 S 1.69586 * 107.17361 * 180.22928 * 4 3 2 6 6 C 1.72028 * 95.78082 * 359.73725 * 5 4 3 7 7 C 1.35057 * 105.59992 * 359.97438 * 6 5 4 8 8 C 1.50700 * 122.63978 * 180.02562 * 7 6 5 9 9 N 1.46904 * 109.47105 * 260.02826 * 8 7 6 10 10 C 1.46906 * 110.99716 * 179.97438 * 9 8 7 11 11 H 1.08996 * 109.46825 * 35.00670 * 10 9 8 12 12 C 1.52997 * 109.47302 * 274.99847 * 10 9 8 13 13 C 1.50708 * 109.46619 * 155.00022 * 10 9 8 14 14 H 1.07995 * 119.99755 * 0.02562 * 13 10 9 15 15 C 1.37873 * 119.99729 * 179.97438 * 13 10 9 16 16 N 1.31516 * 119.99909 * 0.02562 * 15 13 10 17 17 Si 1.86803 * 119.99980 * 179.97438 * 15 13 10 18 18 H 1.48500 * 109.46921 * 60.00420 * 17 15 13 19 19 H 1.48496 * 109.46933 * 180.02562 * 17 15 13 20 20 H 1.48498 * 109.46946 * 300.00103 * 17 15 13 21 21 H 1.09003 * 109.47118 * 300.00339 * 1 2 3 22 22 H 1.09005 * 109.46898 * 60.00397 * 1 2 3 23 23 H 1.08999 * 109.47336 * 180.02562 * 1 2 3 24 24 H 1.07999 * 127.19977 * 180.02562 * 6 5 4 25 25 H 1.08996 * 109.47653 * 140.02823 * 8 7 6 26 26 H 1.09007 * 109.47191 * 20.02676 * 8 7 6 27 27 H 1.00897 * 111.00222 * 303.94941 * 9 8 7 28 28 H 1.09002 * 109.47153 * 180.02562 * 12 10 9 29 29 H 1.09001 * 109.46832 * 60.00356 * 12 10 9 30 30 H 1.09004 * 109.47261 * 300.00337 * 12 10 9 31 31 H 0.97002 * 119.99804 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2113 0.0000 4 7 1.3679 2.3243 0.0050 5 16 2.4909 3.5951 -0.0034 6 6 3.8881 2.5916 -0.0059 7 6 3.4243 1.3232 0.0004 8 6 4.3370 0.1240 0.0012 9 7 4.4375 -0.4158 -1.3614 10 6 5.3218 -1.5883 -1.3993 11 1 5.2118 -2.1562 -0.4755 12 6 6.7735 -1.1277 -1.5453 13 6 4.9509 -2.4595 -2.5718 14 1 4.1397 -2.1708 -3.2237 15 6 5.6478 -3.6244 -2.8126 16 7 6.6359 -3.9756 -2.0190 17 14 5.1876 -4.7047 -4.2655 18 1 5.3362 -3.9310 -5.5242 19 1 6.0816 -5.8898 -4.3038 20 1 3.7789 -5.1523 -4.1228 21 1 -0.3633 0.5139 0.8900 22 1 -0.3633 0.5138 -0.8901 23 1 -0.3634 -1.0276 0.0005 24 1 4.9203 2.9094 -0.0107 25 1 3.9330 -0.6398 0.6656 26 1 5.3268 0.4209 0.3482 27 1 3.5252 -0.6386 -1.7303 28 1 7.4296 -1.9976 -1.5738 29 1 7.0417 -0.4975 -0.6973 30 1 6.8833 -0.5597 -2.4691 31 1 7.1265 -4.7951 -2.1887 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001654068613.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:16:30 Heat of formation + Delta-G solvation = 6.030039 kcal Electronic energy + Delta-G solvation = -15244.032812 eV Core-core repulsion = 12652.848240 eV Total energy + Delta-G solvation = -2591.184573 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 242.083 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.14619 -36.96958 -35.55100 -32.80366 -31.12393 -28.47853 -27.74407 -25.41471 -24.56962 -22.82382 -20.02083 -19.75760 -17.91619 -17.11430 -16.27355 -16.07413 -15.00315 -14.87827 -14.29572 -13.82176 -13.49185 -13.15937 -12.98945 -12.32680 -12.04144 -11.76245 -11.25894 -11.07249 -11.04303 -10.93833 -10.77694 -10.50877 -10.26020 -10.11926 -9.98080 -9.42576 -8.82514 -8.46184 -8.10532 -7.25296 -6.01062 -4.07132 0.84477 1.54131 1.82718 2.60632 3.30977 3.32438 3.36520 3.39706 4.42015 4.80657 5.18998 5.25303 5.27827 5.30200 5.50209 5.57298 5.62633 5.77593 6.15618 6.31216 6.43755 6.88408 7.14345 7.21338 7.23273 7.50460 7.79480 7.91012 8.28341 8.39832 8.67372 9.02718 9.58462 11.05299 Molecular weight = 242.08amu Principal moments of inertia in cm(-1) A = 0.032012 B = 0.005914 C = 0.005304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 874.451127 B = 4733.635981 C = 5277.283927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.286 6.286 3 C 0.321 3.679 4 N -0.536 5.536 5 S 0.255 5.745 6 C -0.172 4.172 7 C -0.150 4.150 8 C 0.128 3.872 9 N -0.682 5.682 10 C 0.212 3.788 11 H 0.003 0.997 12 C -0.124 4.124 13 C -0.517 4.517 14 H 0.059 0.941 15 C 0.062 3.938 16 N -0.891 5.891 17 Si 0.897 3.103 18 H -0.277 1.277 19 H -0.287 1.287 20 H -0.278 1.278 21 H 0.056 0.944 22 H 0.058 0.942 23 H 0.101 0.899 24 H 0.189 0.811 25 H 0.036 0.964 26 H 0.076 0.924 27 H 0.334 0.666 28 H 0.081 0.919 29 H 0.004 0.996 30 H 0.031 0.969 31 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.627 11.342 5.538 14.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.191 6.191 3 C 0.106 3.894 4 N -0.376 5.376 5 S 0.404 5.596 6 C -0.319 4.319 7 C -0.168 4.168 8 C -0.004 4.004 9 N -0.314 5.314 10 C 0.104 3.896 11 H 0.020 0.980 12 C -0.183 4.183 13 C -0.555 4.555 14 H 0.077 0.923 15 C -0.140 4.140 16 N -0.530 5.530 17 Si 0.725 3.275 18 H -0.202 1.202 19 H -0.213 1.213 20 H -0.203 1.203 21 H 0.075 0.925 22 H 0.077 0.923 23 H 0.119 0.881 24 H 0.207 0.793 25 H 0.054 0.946 26 H 0.094 0.906 27 H 0.151 0.849 28 H 0.099 0.901 29 H 0.023 0.977 30 H 0.050 0.950 31 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -8.317 12.952 5.380 16.306 hybrid contribution 0.104 -2.691 -0.397 2.722 sum -8.213 10.261 4.983 14.056 Atomic orbital electron populations 1.22947 0.77211 1.03518 1.02093 1.86377 1.22508 1.22434 1.87794 1.20150 0.90032 0.85083 0.94182 1.76499 1.26237 1.01117 1.33770 1.83698 0.91083 1.13580 1.71279 1.26260 1.05968 0.96297 1.03422 1.19422 0.91329 0.97619 1.08415 1.20427 0.96033 0.90794 0.93161 1.60842 1.16744 1.36666 1.17118 1.19120 0.89569 0.84798 0.96068 0.97982 1.21722 0.99468 1.00063 0.97018 1.21214 1.16975 1.05398 1.11960 0.92323 1.24905 0.94956 0.97537 0.96559 1.69886 1.21202 1.24117 1.37748 0.86584 0.78254 0.79761 0.82937 1.20215 1.21293 1.20347 0.92532 0.92279 0.88101 0.79341 0.94558 0.90566 0.84921 0.90066 0.97704 0.94958 0.92887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.46 10.47 101.05 1.06 1.52 16 2 O -0.29 -4.67 10.13 -19.58 -0.20 -4.87 16 3 C 0.32 5.26 7.40 -18.17 -0.13 5.12 16 4 N -0.54 -8.28 11.14 28.92 0.32 -7.96 16 5 S 0.25 3.19 23.71 -107.50 -2.55 0.65 16 6 C -0.17 -2.28 11.15 29.60 0.33 -1.95 16 7 C -0.15 -2.43 5.35 -105.74 -0.57 -3.00 16 8 C 0.13 2.37 5.50 -4.97 -0.03 2.34 16 9 N -0.68 -14.93 6.29 -109.21 -0.69 -15.62 16 10 C 0.21 5.41 2.60 -68.86 -0.18 5.23 16 11 H 0.00 0.07 7.80 -51.93 -0.41 -0.33 16 12 C -0.12 -3.08 9.19 37.16 0.34 -2.74 16 13 C -0.52 -14.33 8.59 -34.44 -0.30 -14.63 16 14 H 0.06 1.61 7.62 -52.49 -0.40 1.21 16 15 C 0.06 1.73 5.30 -17.82 -0.09 1.63 16 16 N -0.89 -25.49 11.32 55.43 0.63 -24.86 16 17 Si 0.90 21.40 29.54 -169.99 -5.02 16.38 16 18 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 19 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 20 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 21 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 22 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 23 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 24 H 0.19 2.01 8.06 -52.49 -0.42 1.58 16 25 H 0.04 0.70 7.99 -51.93 -0.42 0.29 16 26 H 0.08 1.35 7.37 -51.93 -0.38 0.96 16 27 H 0.33 7.45 8.22 -39.29 -0.32 7.12 16 28 H 0.08 2.19 6.07 -51.93 -0.32 1.87 16 29 H 0.00 0.09 7.45 -51.93 -0.39 -0.30 16 30 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 LS Contribution 280.45 15.07 4.23 4.23 Total: -1.00 -29.84 280.45 -6.72 -36.57 By element: Atomic # 1 Polarization: 5.84 SS G_CDS: -3.88 Total: 1.97 kcal Atomic # 6 Polarization: -6.91 SS G_CDS: 0.43 Total: -6.47 kcal Atomic # 7 Polarization: -48.70 SS G_CDS: 0.26 Total: -48.44 kcal Atomic # 8 Polarization: -4.67 SS G_CDS: -0.20 Total: -4.87 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Atomic # 16 Polarization: 3.19 SS G_CDS: -2.55 Total: 0.65 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -29.84 -6.72 -36.57 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001654068613.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.596 kcal (2) G-P(sol) polarization free energy of solvation -29.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.566 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds