Wall clock time and date at job start Thu Apr 9 2020 12:16:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31504 * 1 3 3 Si 1.86809 * 120.00052 * 2 1 4 4 H 1.48495 * 109.47069 * 240.00393 * 3 2 1 5 5 H 1.48505 * 109.46532 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47146 * 120.00096 * 3 2 1 7 7 C 1.37879 * 120.00303 * 180.02562 * 2 1 3 8 8 H 1.08009 * 120.00073 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00054 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.47092 * 180.02562 * 9 7 2 11 11 N 1.46904 * 109.46950 * 180.02562 * 10 9 7 12 12 C 1.46899 * 111.00029 * 180.02562 * 11 10 9 13 13 C 1.50703 * 109.47107 * 179.97438 * 12 11 10 14 14 C 1.38536 * 120.78197 * 259.71951 * 13 12 11 15 15 C 1.38508 * 119.16325 * 179.78173 * 14 13 12 16 16 F 1.35104 * 119.62305 * 180.27295 * 15 14 13 17 17 N 1.32038 * 120.75610 * 0.50046 * 15 14 13 18 18 C 1.31905 * 121.71428 * 359.75183 * 17 15 14 19 19 C 1.38371 * 120.76026 * 359.97438 * 18 17 15 20 20 F 1.35098 * 120.41208 * 179.97438 * 19 18 17 21 21 H 0.96998 * 120.00316 * 359.97438 * 1 2 3 22 22 H 1.09005 * 109.46937 * 59.99856 * 9 7 2 23 23 H 1.09004 * 109.47318 * 300.00373 * 9 7 2 24 24 H 1.08995 * 109.47319 * 60.00217 * 10 9 7 25 25 H 1.09003 * 109.47435 * 299.99542 * 10 9 7 26 26 H 1.00908 * 110.99583 * 303.94989 * 11 10 9 27 27 H 1.09002 * 109.47043 * 299.99792 * 12 11 10 28 28 H 1.09001 * 109.47354 * 59.99854 * 12 11 10 29 29 H 1.08000 * 120.42065 * 0.02562 * 14 13 12 30 30 H 1.08002 * 119.62192 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3150 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1027 1.6965 -1.2125 5 1 1.2840 2.7465 0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 7 1.5109 -4.9342 -0.0012 12 6 2.4354 -6.0758 -0.0006 13 6 1.6474 -7.3604 -0.0006 14 6 1.4573 -8.0756 1.1706 15 6 0.7235 -9.2497 1.1329 16 9 0.5277 -9.9516 2.2705 17 7 0.2170 -9.6932 -0.0029 18 6 0.3825 -9.0410 -1.1375 19 6 1.0992 -7.8580 -1.1757 20 9 1.2648 -7.1961 -2.3417 21 1 -0.4850 0.8400 0.0004 22 1 0.6241 -2.5567 -0.8903 23 1 0.6247 -2.5571 0.8897 24 1 2.8720 -3.6043 0.8894 25 1 2.8720 -3.6043 -0.8906 26 1 0.8742 -4.9845 0.7801 27 1 3.0640 -6.0348 -0.8901 28 1 3.0628 -6.0349 0.8899 29 1 1.8726 -7.7200 2.1020 30 1 -0.0464 -9.4349 -2.0471 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001664281574.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:16:38 Heat of formation + Delta-G solvation = -59.398964 kcal Electronic energy + Delta-G solvation = -16309.842365 eV Core-core repulsion = 13161.980192 eV Total energy + Delta-G solvation = -3147.862174 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 242.093 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -49.24885 -49.02603 -40.24709 -36.48289 -33.73901 -32.44299 -30.72489 -29.45598 -26.28067 -24.08909 -23.66765 -22.03550 -20.68061 -18.29886 -17.82276 -17.70322 -16.54874 -16.32338 -15.59167 -15.35278 -14.99865 -14.51653 -14.50249 -14.11612 -13.95586 -13.56041 -13.03038 -12.95548 -12.38713 -12.19903 -12.01074 -11.13457 -10.95792 -10.64053 -10.19331 -10.12397 -10.05824 -9.46417 -9.22040 -9.02986 -8.39696 -8.05146 -6.03545 -4.06881 0.48444 0.62020 3.09891 3.22558 3.31071 3.35807 3.37777 3.75161 4.04273 4.33814 4.41030 4.44373 4.74514 5.00059 5.17364 5.26700 5.32531 5.51666 5.61581 5.74379 6.19799 6.24499 6.28459 6.86243 7.18135 7.25345 7.60809 7.68437 7.82523 8.00791 8.36814 8.99862 9.57253 11.07812 Molecular weight = 242.09amu Principal moments of inertia in cm(-1) A = 0.042084 B = 0.004096 C = 0.003944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 665.170484 B = 6834.659180 C = 7098.280989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.059 3.941 3 Si 0.894 3.106 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.524 4.524 8 H 0.054 0.946 9 C 0.025 3.975 10 C 0.067 3.933 11 N -0.684 5.684 12 C 0.093 3.907 13 C -0.041 4.041 14 C -0.160 4.160 15 C 0.293 3.707 16 F -0.110 7.110 17 N -0.491 5.491 18 C 0.106 3.894 19 C 0.066 3.934 20 F -0.112 7.112 21 H 0.262 0.738 22 H 0.026 0.974 23 H 0.014 0.986 24 H 0.020 0.980 25 H 0.062 0.938 26 H 0.339 0.661 27 H 0.090 0.910 28 H 0.048 0.952 29 H 0.156 0.844 30 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.256 -17.596 0.465 17.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.143 4.143 3 Si 0.721 3.279 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.203 1.203 7 C -0.563 4.563 8 H 0.073 0.927 9 C -0.012 4.012 10 C -0.061 4.061 11 N -0.315 5.315 12 C -0.036 4.036 13 C -0.050 4.050 14 C -0.182 4.182 15 C 0.140 3.860 16 F -0.089 7.089 17 N -0.205 5.205 18 C -0.052 4.052 19 C 0.043 3.957 20 F -0.090 7.090 21 H 0.071 0.929 22 H 0.045 0.955 23 H 0.032 0.968 24 H 0.038 0.962 25 H 0.081 0.919 26 H 0.157 0.843 27 H 0.108 0.892 28 H 0.066 0.934 29 H 0.174 0.826 30 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges 2.561 -18.235 -0.196 18.415 hybrid contribution 1.146 1.651 0.979 2.235 sum 3.707 -16.583 0.782 17.011 Atomic orbital electron populations 1.69953 1.06068 1.26817 1.50314 1.24996 0.94837 0.99247 0.95175 0.86635 0.79564 0.83042 0.78612 1.20174 1.21230 1.20276 1.21108 0.92944 0.90917 1.51359 0.92746 1.19070 0.93986 0.90285 0.97863 1.22223 0.97123 0.87731 0.99024 1.60674 1.19263 1.01560 1.50012 1.20892 0.93672 0.86563 1.02471 1.20435 0.96469 0.97011 0.91059 1.21725 1.01503 0.94750 1.00234 1.18050 0.96252 0.89336 0.82358 1.91639 1.93224 1.78430 1.45575 1.67019 1.21365 1.34121 0.97951 1.22611 0.96041 0.90652 0.95872 1.18566 1.00959 0.93283 0.82853 1.91589 1.93322 1.79631 1.44483 0.92855 0.95516 0.96755 0.96218 0.91943 0.84325 0.89165 0.93438 0.82613 0.80378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.68 13.29 55.43 0.74 -25.94 16 2 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 3 Si 0.89 21.39 29.54 -169.99 -5.02 16.37 16 4 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 5 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 6 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 7 C -0.52 -14.63 9.11 -34.44 -0.31 -14.94 16 8 H 0.05 1.46 7.74 -52.48 -0.41 1.05 16 9 C 0.03 0.65 5.23 -27.89 -0.15 0.50 16 10 C 0.07 1.33 5.62 -3.82 -0.02 1.31 16 11 N -0.68 -11.44 6.49 -115.05 -0.75 -12.18 16 12 C 0.09 1.21 5.61 -4.98 -0.03 1.18 16 13 C -0.04 -0.48 5.43 -104.27 -0.57 -1.05 16 14 C -0.16 -1.68 9.75 -39.37 -0.38 -2.07 16 15 C 0.29 3.42 8.41 -17.36 -0.15 3.28 16 16 F -0.11 -1.29 17.29 2.25 0.04 -1.25 16 17 N -0.49 -5.95 10.37 -13.54 -0.14 -6.09 16 18 C 0.11 1.12 11.17 -17.47 -0.20 0.93 16 19 C 0.07 0.79 7.29 -39.29 -0.29 0.50 16 20 F -0.11 -1.50 16.80 2.25 0.04 -1.46 16 21 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 22 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 23 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 24 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 25 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 26 H 0.34 5.48 8.72 -39.29 -0.34 5.14 16 27 H 0.09 1.18 8.02 -51.93 -0.42 0.76 16 28 H 0.05 0.55 8.04 -51.93 -0.42 0.13 16 29 H 0.16 1.30 8.06 -52.49 -0.42 0.87 16 30 H 0.18 1.34 8.06 -52.49 -0.42 0.92 16 LS Contribution 277.69 15.07 4.18 4.18 Total: -1.00 -30.40 277.69 -6.35 -36.74 By element: Atomic # 1 Polarization: 1.65 SS G_CDS: -3.25 Total: -1.60 kcal Atomic # 6 Polarization: -6.59 SS G_CDS: -2.18 Total: -8.78 kcal Atomic # 7 Polarization: -44.06 SS G_CDS: -0.15 Total: -44.22 kcal Atomic # 9 Polarization: -2.78 SS G_CDS: 0.08 Total: -2.71 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -30.40 -6.35 -36.74 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001664281574.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.654 kcal (2) G-P(sol) polarization free energy of solvation -30.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.745 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds