Wall clock time and date at job start Thu Apr 9 2020 12:16:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31504 * 1 3 3 Si 1.86809 * 120.00052 * 2 1 4 4 H 1.48495 * 109.47069 * 240.00393 * 3 2 1 5 5 H 1.48505 * 109.46532 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47146 * 120.00096 * 3 2 1 7 7 C 1.37879 * 120.00303 * 180.02562 * 2 1 3 8 8 H 1.08009 * 120.00073 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00054 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.47092 * 180.02562 * 9 7 2 11 11 N 1.46904 * 109.46950 * 180.02562 * 10 9 7 12 12 C 1.46899 * 111.00029 * 180.02562 * 11 10 9 13 13 C 1.50703 * 109.47107 * 179.97438 * 12 11 10 14 14 C 1.38536 * 120.78197 * 259.71951 * 13 12 11 15 15 C 1.38508 * 119.16325 * 179.78173 * 14 13 12 16 16 F 1.35104 * 119.62305 * 180.27295 * 15 14 13 17 17 N 1.32038 * 120.75610 * 0.50046 * 15 14 13 18 18 C 1.31905 * 121.71428 * 359.75183 * 17 15 14 19 19 C 1.38371 * 120.76026 * 359.97438 * 18 17 15 20 20 F 1.35098 * 120.41208 * 179.97438 * 19 18 17 21 21 H 0.96998 * 120.00316 * 359.97438 * 1 2 3 22 22 H 1.09005 * 109.46937 * 59.99856 * 9 7 2 23 23 H 1.09004 * 109.47318 * 300.00373 * 9 7 2 24 24 H 1.08995 * 109.47319 * 60.00217 * 10 9 7 25 25 H 1.09003 * 109.47435 * 299.99542 * 10 9 7 26 26 H 1.00908 * 110.99583 * 303.94989 * 11 10 9 27 27 H 1.09002 * 109.47043 * 299.99792 * 12 11 10 28 28 H 1.09001 * 109.47354 * 59.99854 * 12 11 10 29 29 H 1.08000 * 120.42065 * 0.02562 * 14 13 12 30 30 H 1.08002 * 119.62192 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3150 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1027 1.6965 -1.2125 5 1 1.2840 2.7465 0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 7 1.5109 -4.9342 -0.0012 12 6 2.4354 -6.0758 -0.0006 13 6 1.6474 -7.3604 -0.0006 14 6 1.4573 -8.0756 1.1706 15 6 0.7235 -9.2497 1.1329 16 9 0.5277 -9.9516 2.2705 17 7 0.2170 -9.6932 -0.0029 18 6 0.3825 -9.0410 -1.1375 19 6 1.0992 -7.8580 -1.1757 20 9 1.2648 -7.1961 -2.3417 21 1 -0.4850 0.8400 0.0004 22 1 0.6241 -2.5567 -0.8903 23 1 0.6247 -2.5571 0.8897 24 1 2.8720 -3.6043 0.8894 25 1 2.8720 -3.6043 -0.8906 26 1 0.8742 -4.9845 0.7801 27 1 3.0640 -6.0348 -0.8901 28 1 3.0628 -6.0349 0.8899 29 1 1.8726 -7.7200 2.1020 30 1 -0.0464 -9.4349 -2.0471 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001664281574.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:16:38 Heat of formation + Delta-G solvation = -79.853064 kcal Electronic energy + Delta-G solvation = -16310.729322 eV Core-core repulsion = 13161.980192 eV Total energy + Delta-G solvation = -3148.749130 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 242.093 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -50.14632 -50.00405 -41.14151 -37.81136 -35.40555 -33.98692 -31.64603 -31.11227 -27.68995 -25.54757 -24.80658 -23.05415 -22.48020 -19.21257 -18.78380 -18.64159 -18.48144 -17.41404 -16.73044 -16.55970 -16.41451 -15.81882 -15.59718 -15.43247 -15.06426 -14.56346 -14.35670 -14.17025 -13.85118 -13.52753 -13.45534 -12.85305 -12.80554 -12.47164 -11.95054 -11.50928 -11.36318 -10.99028 -10.93766 -10.55433 -9.93372 -9.38829 -8.19682 -6.31289 -0.39316 -0.27003 1.41933 1.44822 1.52725 2.21006 2.36502 2.41689 2.87106 3.08943 3.14324 3.46949 3.52143 3.58869 4.15661 4.23862 4.34153 4.53696 4.57876 4.62301 4.69462 4.86255 5.06548 5.40471 5.44096 5.65534 5.76283 6.05957 6.21521 6.31565 6.42600 6.86228 7.38370 8.92289 Molecular weight = 242.09amu Principal moments of inertia in cm(-1) A = 0.042084 B = 0.004096 C = 0.003944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 665.170484 B = 6834.659180 C = 7098.280989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.001 3.999 3 Si 0.966 3.034 4 H -0.267 1.267 5 H -0.285 1.285 6 H -0.265 1.265 7 C -0.545 4.545 8 H 0.063 0.937 9 C 0.030 3.970 10 C 0.086 3.914 11 N -0.695 5.695 12 C 0.097 3.903 13 C -0.047 4.047 14 C -0.147 4.147 15 C 0.285 3.715 16 F -0.112 7.112 17 N -0.507 5.507 18 C 0.115 3.885 19 C 0.054 3.946 20 F -0.123 7.123 21 H 0.264 0.736 22 H -0.008 1.008 23 H -0.008 1.008 24 H 0.030 0.970 25 H 0.062 0.938 26 H 0.342 0.658 27 H 0.090 0.910 28 H 0.071 0.929 29 H 0.180 0.820 30 H 0.207 0.793 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.532 -17.889 0.815 18.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.197 4.197 3 Si 0.790 3.210 4 H -0.192 1.192 5 H -0.210 1.210 6 H -0.190 1.190 7 C -0.583 4.583 8 H 0.081 0.919 9 C -0.008 4.008 10 C -0.042 4.042 11 N -0.326 5.326 12 C -0.032 4.032 13 C -0.056 4.056 14 C -0.169 4.169 15 C 0.132 3.868 16 F -0.091 7.091 17 N -0.221 5.221 18 C -0.043 4.043 19 C 0.031 3.969 20 F -0.102 7.102 21 H 0.072 0.928 22 H 0.011 0.989 23 H 0.011 0.989 24 H 0.049 0.951 25 H 0.080 0.920 26 H 0.160 0.840 27 H 0.108 0.892 28 H 0.089 0.911 29 H 0.198 0.802 30 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges 3.851 -18.554 0.161 18.950 hybrid contribution 0.707 1.656 0.866 1.998 sum 4.558 -16.898 1.027 17.532 Atomic orbital electron populations 1.70097 1.07893 1.27866 1.51409 1.25968 0.95711 1.03390 0.94624 0.85486 0.78231 0.78001 0.79232 1.19169 1.21018 1.19011 1.21593 0.93644 0.92140 1.50957 0.91850 1.18930 0.94389 0.92357 0.95084 1.21798 0.95566 0.87408 0.99468 1.60504 1.20077 1.01489 1.50534 1.20882 0.93284 0.85438 1.03562 1.20355 0.96910 0.96783 0.91561 1.21853 1.00511 0.93852 1.00657 1.18218 0.96593 0.89744 0.82286 1.91634 1.93269 1.78521 1.45665 1.67057 1.21869 1.34711 0.98483 1.22984 0.95095 0.89877 0.96351 1.18778 1.01634 0.93881 0.82590 1.91561 1.93506 1.79965 1.45148 0.92778 0.98943 0.98927 0.95138 0.91985 0.84024 0.89209 0.91130 0.80247 0.77657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.63 13.29 21.45 0.28 -56.34 16 2 C 0.00 0.06 5.46 84.66 0.46 0.53 16 3 Si 0.97 43.58 29.54 68.60 2.03 45.60 16 4 H -0.27 -11.55 7.11 99.48 0.71 -10.85 16 5 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 6 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 7 C -0.54 -30.45 9.11 25.60 0.23 -30.22 16 8 H 0.06 3.34 7.74 -2.91 -0.02 3.32 16 9 C 0.03 1.55 5.23 29.85 0.16 1.71 16 10 C 0.09 3.37 5.62 86.30 0.49 3.86 16 11 N -0.69 -22.62 6.49 -517.92 -3.36 -25.98 16 12 C 0.10 2.33 5.61 85.56 0.48 2.81 16 13 C -0.05 -1.03 5.43 -19.64 -0.11 -1.14 16 14 C -0.15 -2.77 9.75 22.41 0.22 -2.55 16 15 C 0.28 6.16 8.41 84.73 0.71 6.88 16 16 F -0.11 -2.46 17.29 44.97 0.78 -1.68 16 17 N -0.51 -11.52 10.37 -196.76 -2.04 -13.56 16 18 C 0.12 2.24 11.17 84.71 0.95 3.19 16 19 C 0.05 1.21 7.29 22.46 0.16 1.37 16 20 F -0.12 -3.20 16.80 44.97 0.76 -2.45 16 21 H 0.26 15.07 8.31 -92.71 -0.77 14.30 16 22 H -0.01 -0.46 8.14 -2.38 -0.02 -0.48 16 23 H -0.01 -0.42 8.14 -2.39 -0.02 -0.44 16 24 H 0.03 1.13 8.14 -2.39 -0.02 1.11 16 25 H 0.06 2.43 8.14 -2.39 -0.02 2.41 16 26 H 0.34 10.80 8.72 -89.69 -0.78 10.02 16 27 H 0.09 2.19 8.02 -2.39 -0.02 2.17 16 28 H 0.07 1.41 8.04 -2.39 -0.02 1.39 16 29 H 0.18 2.44 8.06 -2.91 -0.02 2.42 16 30 H 0.21 2.67 8.06 -2.91 -0.02 2.64 16 Total: -1.00 -65.16 277.69 2.58 -62.58 By element: Atomic # 1 Polarization: 5.00 SS G_CDS: 0.38 Total: 5.38 kcal Atomic # 6 Polarization: -17.32 SS G_CDS: 3.75 Total: -13.57 kcal Atomic # 7 Polarization: -90.76 SS G_CDS: -5.12 Total: -95.88 kcal Atomic # 9 Polarization: -5.66 SS G_CDS: 1.53 Total: -4.12 kcal Atomic # 14 Polarization: 43.58 SS G_CDS: 2.03 Total: 45.60 kcal Total: -65.16 2.58 -62.58 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001664281574.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.271 kcal (2) G-P(sol) polarization free energy of solvation -65.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.582 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds