Wall clock time and date at job start Thu Apr 9 2020 12:15:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86802 * 120.00165 * 2 1 4 4 H 1.48495 * 109.47408 * 270.00251 * 3 2 1 5 5 H 1.48506 * 109.46919 * 30.00345 * 3 2 1 6 6 H 1.48502 * 109.47301 * 150.00045 * 3 2 1 7 7 C 1.37882 * 120.00054 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99766 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99971 * 359.97438 * 7 2 1 10 10 C 1.53005 * 109.46881 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.46717 * 179.97438 * 10 9 7 12 12 N 1.46902 * 109.47272 * 180.02562 * 11 10 9 13 13 C 1.47012 * 110.99592 * 70.52364 * 12 11 10 14 14 C 1.53098 * 109.25509 * 182.39525 * 13 12 11 15 15 O 1.43017 * 109.26165 * 303.14851 * 14 13 12 16 16 C 1.43023 * 113.73287 * 58.67311 * 15 14 13 17 17 C 1.47005 * 111.00504 * 194.15913 * 12 11 10 18 18 H 1.09001 * 109.51006 * 297.54354 * 17 12 11 19 19 C 1.50706 * 109.54210 * 57.65496 * 17 12 11 20 20 N 1.34783 * 119.99968 * 207.97602 * 19 17 12 21 21 O 1.21279 * 120.00028 * 27.96221 * 19 17 12 22 22 H 0.97000 * 120.00471 * 359.97438 * 1 2 3 23 23 H 1.09005 * 109.46797 * 60.00547 * 9 7 2 24 24 H 1.08990 * 109.47257 * 300.00009 * 9 7 2 25 25 H 1.08998 * 109.47176 * 60.00365 * 10 9 7 26 26 H 1.08998 * 109.47102 * 299.99785 * 10 9 7 27 27 H 1.09003 * 109.47371 * 60.00045 * 11 10 9 28 28 H 1.08995 * 109.47753 * 300.00211 * 11 10 9 29 29 H 1.09000 * 109.51052 * 62.46159 * 13 12 11 30 30 H 1.09000 * 109.50960 * 302.32424 * 13 12 11 31 31 H 1.09010 * 109.50633 * 183.21849 * 14 13 12 32 32 H 1.09004 * 109.50948 * 63.08986 * 14 13 12 33 33 H 1.08998 * 109.50916 * 61.26375 * 16 15 14 34 34 H 1.08997 * 109.50308 * 181.39270 * 16 15 14 35 35 H 0.96993 * 119.99731 * 359.97438 * 20 19 17 36 36 H 0.96992 * 119.99713 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0018 11 6 1.4803 -4.9871 -0.0012 12 7 2.4349 -6.1037 -0.0018 13 6 3.1259 -6.2066 1.2917 14 6 4.1511 -7.3419 1.2275 15 8 3.4874 -8.5572 0.8700 16 6 2.8043 -8.4925 -0.3849 17 6 1.7656 -7.3689 -0.3369 18 1 1.0173 -7.5971 0.4221 19 6 1.0966 -7.2445 -1.6816 20 7 0.0047 -7.9833 -1.9620 21 8 1.5405 -6.4795 -2.5114 22 1 -0.4851 0.8400 0.0004 23 1 0.6241 -2.5567 -0.8904 24 1 0.6247 -2.5571 0.8896 25 1 2.8726 -3.6047 0.8877 26 1 2.8713 -3.6039 -0.8923 27 1 0.8526 -5.0447 -0.8905 28 1 0.8546 -5.0450 0.8894 29 1 2.3995 -6.4162 2.0769 30 1 3.6357 -5.2677 1.5078 31 1 4.6256 -7.4594 2.2018 32 1 4.9081 -7.1069 0.4792 33 1 3.5221 -8.2909 -1.1800 34 1 2.3048 -9.4421 -0.5767 35 1 -0.3503 -8.5953 -1.2985 36 1 -0.4261 -7.9030 -2.8273 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000092228607.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:15:36 Heat of formation + Delta-G solvation = -85.940082 kcal Electronic energy + Delta-G solvation = -17919.331421 eV Core-core repulsion = 15017.238948 eV Total energy + Delta-G solvation = -2902.092473 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 242.142 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.43469 -38.47844 -36.07951 -33.79258 -33.49324 -31.57620 -31.14041 -28.03664 -25.42322 -24.94527 -22.47657 -21.65126 -19.99091 -19.88942 -17.64345 -16.95101 -16.50580 -16.37591 -15.90110 -15.08545 -14.91634 -14.50176 -14.33622 -14.15800 -13.73864 -13.38608 -12.85931 -12.32068 -12.10165 -11.75222 -11.50818 -11.20700 -10.83836 -10.75960 -10.55043 -10.49025 -10.02960 -9.74858 -9.66560 -9.52583 -9.26473 -9.00939 -8.29599 -8.21124 -5.94842 -3.96500 2.56653 3.25265 3.36079 3.41629 3.45332 3.65453 3.98520 4.51158 4.69036 4.78473 4.88288 4.99033 5.11872 5.25565 5.41011 5.45250 5.53591 5.69186 5.83334 5.87067 5.97313 6.33394 6.64503 6.70900 6.75895 6.90735 7.03099 7.19678 7.28017 7.31967 7.73910 7.89677 8.05819 8.24126 8.49414 9.10483 9.67073 11.16826 Molecular weight = 242.14amu Principal moments of inertia in cm(-1) A = 0.030754 B = 0.005275 C = 0.004723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 910.223743 B = 5307.164338 C = 5927.207934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.055 3.945 3 Si 0.892 3.108 4 H -0.280 1.280 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.516 4.516 8 H 0.055 0.945 9 C 0.022 3.978 10 C -0.099 4.099 11 C 0.054 3.946 12 N -0.515 5.515 13 C 0.017 3.983 14 C 0.061 3.939 15 O -0.382 6.382 16 C 0.079 3.921 17 C 0.029 3.971 18 H 0.065 0.935 19 C 0.521 3.479 20 N -0.859 5.859 21 O -0.507 6.507 22 H 0.259 0.741 23 H 0.015 0.985 24 H 0.012 0.988 25 H 0.045 0.955 26 H 0.058 0.942 27 H 0.074 0.926 28 H 0.029 0.971 29 H 0.042 0.958 30 H 0.099 0.901 31 H 0.100 0.900 32 H 0.063 0.937 33 H 0.067 0.933 34 H 0.098 0.902 35 H 0.399 0.601 36 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.293 -19.613 1.267 19.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.145 4.145 3 Si 0.720 3.280 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.199 1.199 7 C -0.555 4.555 8 H 0.074 0.926 9 C -0.015 4.015 10 C -0.137 4.137 11 C -0.073 4.073 12 N -0.241 5.241 13 C -0.110 4.110 14 C -0.016 4.016 15 O -0.300 6.300 16 C 0.001 3.999 17 C -0.083 4.083 18 H 0.083 0.917 19 C 0.303 3.697 20 N -0.424 5.424 21 O -0.380 6.380 22 H 0.069 0.931 23 H 0.034 0.966 24 H 0.031 0.969 25 H 0.064 0.936 26 H 0.077 0.923 27 H 0.093 0.907 28 H 0.047 0.953 29 H 0.060 0.940 30 H 0.118 0.882 31 H 0.118 0.882 32 H 0.081 0.919 33 H 0.086 0.914 34 H 0.116 0.884 35 H 0.227 0.773 36 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges 2.952 -18.998 0.608 19.236 hybrid contribution -0.766 0.821 0.453 1.211 sum 2.186 -18.178 1.062 18.339 Atomic orbital electron populations 1.69966 1.06080 1.26495 1.51179 1.25027 0.94840 0.99244 0.95420 0.86590 0.79816 0.83455 0.78116 1.20651 1.21291 1.19878 1.21249 0.93059 0.90996 1.50156 0.92647 1.19065 0.94045 0.91415 0.96988 1.21583 0.99114 0.92211 1.00804 1.22422 0.93665 0.90914 1.00266 1.62130 1.30163 1.01568 1.30203 1.22877 0.97502 1.00721 0.89948 1.22778 0.94166 0.83361 1.01293 1.87972 1.69118 1.35189 1.37745 1.22490 0.93694 0.96506 0.87232 1.22287 0.97094 0.94049 0.94916 0.91697 1.20269 0.80314 0.79931 0.89148 1.43902 1.31617 1.46118 1.20806 1.90817 1.63139 1.35510 1.48496 0.93089 0.96635 0.96934 0.93597 0.92287 0.90721 0.95314 0.93952 0.88244 0.88212 0.91858 0.91450 0.88353 0.77298 0.76645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.74 13.29 55.43 0.74 -27.01 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.89 22.26 29.54 -169.99 -5.02 17.24 16 4 H -0.28 -6.92 7.11 56.52 0.40 -6.51 16 5 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 6 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 7 C -0.52 -15.20 9.11 -34.44 -0.31 -15.51 16 8 H 0.06 1.59 7.74 -52.48 -0.41 1.18 16 9 C 0.02 0.61 4.97 -27.88 -0.14 0.47 16 10 C -0.10 -2.20 5.18 -26.73 -0.14 -2.34 16 11 C 0.05 1.02 4.64 -3.82 -0.02 1.00 16 12 N -0.51 -8.20 4.24 -227.73 -0.97 -9.17 16 13 C 0.02 0.24 5.46 -3.71 -0.02 0.22 16 14 C 0.06 0.69 7.01 37.21 0.26 0.95 16 15 O -0.38 -4.61 10.83 -35.23 -0.38 -4.99 16 16 C 0.08 0.87 6.27 37.21 0.23 1.10 16 17 C 0.03 0.38 2.37 -68.75 -0.16 0.21 16 18 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 19 C 0.52 7.15 6.04 -10.98 -0.07 7.09 16 20 N -0.86 -7.56 8.87 31.22 0.28 -7.29 16 21 O -0.51 -9.56 16.40 5.56 0.09 -9.46 16 22 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 23 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 24 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 25 H 0.05 0.97 6.66 -51.93 -0.35 0.62 16 26 H 0.06 1.38 8.14 -51.93 -0.42 0.96 16 27 H 0.07 1.52 5.97 -51.93 -0.31 1.21 16 28 H 0.03 0.53 8.07 -51.93 -0.42 0.11 16 29 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.10 1.39 6.56 -51.93 -0.34 1.05 16 31 H 0.10 0.90 8.14 -51.92 -0.42 0.48 16 32 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.40 2.18 8.83 -40.82 -0.36 1.82 16 36 H 0.40 3.19 8.93 -40.82 -0.36 2.82 16 LS Contribution 295.35 15.07 4.45 4.45 Total: -1.00 -35.21 295.35 -6.76 -41.98 By element: Atomic # 1 Polarization: 5.00 SS G_CDS: -5.49 Total: -0.49 kcal Atomic # 6 Polarization: -4.80 SS G_CDS: -0.46 Total: -5.27 kcal Atomic # 7 Polarization: -43.51 SS G_CDS: 0.05 Total: -43.46 kcal Atomic # 8 Polarization: -14.16 SS G_CDS: -0.29 Total: -14.45 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.02 Total: 17.24 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -35.21 -6.76 -41.98 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092228607.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.964 kcal (2) G-P(sol) polarization free energy of solvation -35.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.976 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds