Wall clock time and date at job start Thu Apr 9 2020 12:15:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 H 1.09004 * 109.47346 * 305.00346 * 3 2 1 5 5 C 1.50699 * 109.47337 * 185.00273 * 3 2 1 6 6 H 1.08005 * 119.99768 * 239.99676 * 5 3 2 7 7 C 1.37873 * 120.00204 * 59.99898 * 5 3 2 8 8 N 1.31519 * 120.00018 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 120.00213 * 179.97438 * 7 5 3 10 10 H 1.48501 * 109.46894 * 60.00253 * 9 7 5 11 11 H 1.48500 * 109.47102 * 179.97438 * 9 7 5 12 12 H 1.48498 * 109.47542 * 300.00050 * 9 7 5 13 13 N 1.46497 * 109.47195 * 64.99866 * 3 2 1 14 14 C 1.34777 * 120.00660 * 275.00187 * 13 3 2 15 15 O 1.21281 * 119.99633 * 0.02562 * 14 13 3 16 16 C 1.50700 * 120.00373 * 179.97438 * 14 13 3 17 17 H 1.08998 * 110.28543 * 57.87586 * 16 14 13 18 18 C 1.54370 * 110.32441 * 295.64139 * 16 14 13 19 19 N 1.48570 * 104.59543 * 217.24859 * 18 16 14 20 20 C 1.48568 * 104.21853 * 39.48325 * 19 18 16 21 21 C 1.54264 * 110.32075 * 180.02562 * 16 14 13 22 22 H 1.08996 * 110.32854 * 359.89824 * 21 16 14 23 23 O 1.42902 * 110.31910 * 237.79460 * 21 16 14 24 24 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 26 26 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 27 27 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 28 28 H 1.09001 * 109.47194 * 240.00350 * 2 1 3 29 29 H 0.96993 * 120.00193 * 179.97438 * 8 7 5 30 30 H 0.97010 * 119.99804 * 95.00047 * 13 3 2 31 31 H 1.09001 * 110.41470 * 336.02478 * 18 16 14 32 32 H 1.08995 * 110.41691 * 98.47336 * 18 16 14 33 33 H 1.00901 * 111.00263 * 159.03692 * 19 18 16 34 34 H 1.08998 * 110.41152 * 201.73811 * 20 19 18 35 35 H 1.08995 * 110.40778 * 79.29663 * 20 19 18 36 36 H 0.96703 * 113.99533 * 180.02562 * 23 21 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 3.5419 1.4444 -0.1239 6 1 4.1472 1.8890 0.6523 7 6 4.1432 0.8785 -1.2280 8 7 3.4061 0.3375 -2.1734 9 14 6.0048 0.8815 -1.3819 10 1 6.5975 0.1475 -0.2351 11 1 6.3977 0.2169 -2.6505 12 1 6.4994 2.2817 -1.3823 13 7 1.6524 2.0975 1.2518 14 6 0.4351 2.6644 1.3670 15 8 -0.3397 2.6319 0.4345 16 6 0.0362 3.3376 2.6549 17 1 0.7414 4.1318 2.9004 18 6 -0.0322 2.3054 3.8007 19 7 -1.1911 2.7367 4.6244 20 6 -2.2052 3.1700 3.6289 21 6 -1.3935 3.9059 2.5420 22 1 -1.8060 3.6994 1.5545 23 8 -1.3896 5.3127 2.7931 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 1.8934 -0.5139 0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 3.8292 -0.0602 -2.9503 30 1 2.2720 2.1231 1.9978 31 1 -0.2007 1.3051 3.4018 32 1 0.8839 2.3310 4.3908 33 1 -1.5389 1.9743 5.1864 34 1 -2.9251 3.8466 4.0894 35 1 -2.7136 2.3051 3.2030 36 1 -2.2626 5.7247 2.7361 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001220898718.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:15:44 Heat of formation + Delta-G solvation = -90.182428 kcal Electronic energy + Delta-G solvation = -18321.703718 eV Core-core repulsion = 15419.427283 eV Total energy + Delta-G solvation = -2902.276435 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 242.142 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.93138 -37.86429 -35.30416 -35.05677 -32.44183 -31.22851 -29.79446 -28.15645 -26.85358 -23.26341 -22.29074 -21.55328 -19.75853 -19.22285 -17.92279 -16.90025 -16.27285 -15.77007 -15.15788 -14.82677 -14.65239 -14.16615 -13.49195 -13.38150 -12.89476 -12.71550 -12.61660 -12.23097 -11.93546 -11.60061 -11.28505 -11.26745 -11.01293 -10.83478 -10.68729 -10.35321 -10.22576 -9.90629 -9.66568 -9.11983 -9.04714 -8.67856 -8.51090 -7.86805 -6.13989 -4.23561 3.24861 3.29923 3.30462 3.32484 3.81555 4.19426 4.31544 4.51906 4.66000 4.73196 5.16868 5.20808 5.23165 5.48007 5.60344 5.71137 5.79533 5.93996 6.02269 6.33492 6.39529 6.51173 6.60473 6.98136 7.12711 7.15025 7.32212 7.41451 7.58839 7.69691 7.72450 7.87447 8.15241 8.62889 8.74933 9.08316 9.43838 10.91386 Molecular weight = 242.14amu Principal moments of inertia in cm(-1) A = 0.037044 B = 0.005973 C = 0.005760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 755.670314 B = 4686.349129 C = 4860.287157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.127 4.127 3 C 0.270 3.730 4 H 0.049 0.951 5 C -0.535 4.535 6 H 0.061 0.939 7 C 0.067 3.933 8 N -0.883 5.883 9 Si 0.902 3.098 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.276 1.276 13 N -0.703 5.703 14 C 0.510 3.490 15 O -0.548 6.548 16 C -0.112 4.112 17 H 0.112 0.888 18 C 0.048 3.952 19 N -0.659 5.659 20 C 0.004 3.996 21 C 0.108 3.892 22 H 0.092 0.908 23 O -0.558 6.558 24 H 0.022 0.978 25 H 0.036 0.964 26 H 0.050 0.950 27 H 0.031 0.969 28 H 0.100 0.900 29 H 0.265 0.735 30 H 0.389 0.611 31 H 0.050 0.950 32 H 0.091 0.909 33 H 0.336 0.664 34 H 0.085 0.915 35 H 0.049 0.951 36 H 0.375 0.625 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.048 2.887 10.677 13.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.166 4.166 3 C 0.168 3.832 4 H 0.067 0.933 5 C -0.574 4.574 6 H 0.079 0.921 7 C -0.136 4.136 8 N -0.520 5.520 9 Si 0.729 3.271 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.202 1.202 13 N -0.350 5.350 14 C 0.294 3.706 15 O -0.428 6.428 16 C -0.134 4.134 17 H 0.130 0.870 18 C -0.082 4.082 19 N -0.288 5.288 20 C -0.125 4.125 21 C 0.049 3.951 22 H 0.109 0.891 23 O -0.363 6.363 24 H 0.041 0.959 25 H 0.055 0.945 26 H 0.069 0.931 27 H 0.050 0.950 28 H 0.118 0.882 29 H 0.075 0.925 30 H 0.221 0.779 31 H 0.068 0.932 32 H 0.109 0.891 33 H 0.151 0.849 34 H 0.103 0.897 35 H 0.068 0.932 36 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges -7.661 3.303 10.073 13.080 hybrid contribution 0.409 -0.861 -0.161 0.967 sum -7.252 2.442 9.912 12.522 Atomic orbital electron populations 1.21838 0.98475 0.97962 1.01106 1.21937 0.92490 0.99863 1.02333 1.18799 0.94263 0.89131 0.80983 0.93296 1.21199 0.90687 1.39109 1.06365 0.92089 1.24883 0.98650 0.94761 0.95344 1.69880 1.35263 1.37574 1.09323 0.86506 0.84795 0.78350 0.77448 1.20154 1.21127 1.20152 1.46466 1.14367 1.55599 1.18570 1.20015 0.82967 0.79198 0.88455 1.90638 1.51504 1.60140 1.40476 1.21992 0.98391 0.98811 0.94216 0.87029 1.22864 0.95898 0.96226 0.93212 1.63733 1.06208 1.38869 1.19943 1.23687 0.95300 0.99810 0.93747 1.22480 0.94183 0.80739 0.97732 0.89065 1.86524 1.34753 1.20801 1.94256 0.95873 0.94529 0.93111 0.95030 0.88230 0.92488 0.77857 0.93172 0.89092 0.84892 0.89697 0.93233 0.77794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.98 8.51 37.16 0.32 -2.66 16 2 C -0.13 -3.05 5.45 -26.73 -0.15 -3.19 16 3 C 0.27 6.70 2.24 -69.09 -0.15 6.55 16 4 H 0.05 1.42 7.58 -51.93 -0.39 1.02 16 5 C -0.54 -14.02 8.73 -34.44 -0.30 -14.32 16 6 H 0.06 1.53 7.74 -52.48 -0.41 1.12 16 7 C 0.07 1.78 5.29 -17.82 -0.09 1.69 16 8 N -0.88 -24.59 11.29 55.43 0.63 -23.96 16 9 Si 0.90 20.52 29.54 -169.99 -5.02 15.50 16 10 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 11 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 12 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 13 N -0.70 -14.31 5.00 -54.93 -0.27 -14.59 16 14 C 0.51 9.93 5.57 -10.99 -0.06 9.87 16 15 O -0.55 -12.43 12.39 5.56 0.07 -12.36 16 16 C -0.11 -1.74 3.26 -90.39 -0.29 -2.03 16 17 H 0.11 1.75 7.98 -51.93 -0.41 1.33 16 18 C 0.05 0.62 6.98 -2.18 -0.02 0.61 16 19 N -0.66 -7.81 7.63 -109.69 -0.84 -8.65 16 20 C 0.00 0.05 7.21 -2.20 -0.02 0.04 16 21 C 0.11 1.56 4.01 -25.37 -0.10 1.45 16 22 H 0.09 1.47 6.46 -51.93 -0.34 1.13 16 23 O -0.56 -7.64 13.26 -35.23 -0.47 -8.11 16 24 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 25 H 0.04 0.76 5.64 -51.93 -0.29 0.47 16 26 H 0.05 1.19 7.85 -51.93 -0.41 0.78 16 27 H 0.03 0.72 8.14 -51.93 -0.42 0.29 16 28 H 0.10 2.65 5.95 -51.93 -0.31 2.34 16 29 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 30 H 0.39 6.94 8.54 -40.82 -0.35 6.59 16 31 H 0.05 0.68 7.85 -51.93 -0.41 0.27 16 32 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 33 H 0.34 3.25 8.92 -39.29 -0.35 2.90 16 34 H 0.08 0.85 8.08 -51.93 -0.42 0.43 16 35 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.38 3.29 9.12 45.56 0.42 3.71 16 LS Contribution 290.27 15.07 4.37 4.37 Total: -1.00 -30.72 290.27 -6.89 -37.62 By element: Atomic # 1 Polarization: 16.68 SS G_CDS: -4.50 Total: 12.18 kcal Atomic # 6 Polarization: -1.14 SS G_CDS: -0.87 Total: -2.01 kcal Atomic # 7 Polarization: -46.71 SS G_CDS: -0.48 Total: -47.20 kcal Atomic # 8 Polarization: -20.07 SS G_CDS: -0.40 Total: -20.47 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.02 Total: 15.50 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -30.72 -6.89 -37.62 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001220898718.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.567 kcal (2) G-P(sol) polarization free energy of solvation -30.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.616 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds