Wall clock time and date at job start Thu Apr 9 2020 12:15:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 H 1.09004 * 109.47346 * 305.00346 * 3 2 1 5 5 C 1.50699 * 109.47337 * 185.00273 * 3 2 1 6 6 H 1.08005 * 119.99768 * 239.99676 * 5 3 2 7 7 C 1.37873 * 120.00204 * 59.99898 * 5 3 2 8 8 N 1.31519 * 120.00018 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 120.00213 * 179.97438 * 7 5 3 10 10 H 1.48501 * 109.46894 * 60.00253 * 9 7 5 11 11 H 1.48500 * 109.47102 * 179.97438 * 9 7 5 12 12 H 1.48498 * 109.47542 * 300.00050 * 9 7 5 13 13 N 1.46497 * 109.47195 * 64.99866 * 3 2 1 14 14 C 1.34777 * 120.00660 * 275.00187 * 13 3 2 15 15 O 1.21281 * 119.99633 * 0.02562 * 14 13 3 16 16 C 1.50700 * 120.00373 * 179.97438 * 14 13 3 17 17 H 1.08998 * 110.28543 * 57.87586 * 16 14 13 18 18 C 1.54370 * 110.32441 * 295.64139 * 16 14 13 19 19 N 1.48570 * 104.59543 * 217.24859 * 18 16 14 20 20 C 1.48568 * 104.21853 * 39.48325 * 19 18 16 21 21 C 1.54264 * 110.32075 * 180.02562 * 16 14 13 22 22 H 1.08996 * 110.32854 * 359.89824 * 21 16 14 23 23 O 1.42902 * 110.31910 * 237.79460 * 21 16 14 24 24 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 26 26 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 27 27 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 28 28 H 1.09001 * 109.47194 * 240.00350 * 2 1 3 29 29 H 0.96993 * 120.00193 * 179.97438 * 8 7 5 30 30 H 0.97010 * 119.99804 * 95.00047 * 13 3 2 31 31 H 1.09001 * 110.41470 * 336.02478 * 18 16 14 32 32 H 1.08995 * 110.41691 * 98.47336 * 18 16 14 33 33 H 1.00901 * 111.00263 * 159.03692 * 19 18 16 34 34 H 1.08998 * 110.41152 * 201.73811 * 20 19 18 35 35 H 1.08995 * 110.40778 * 79.29663 * 20 19 18 36 36 H 0.96703 * 113.99533 * 180.02562 * 23 21 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 3.5419 1.4444 -0.1239 6 1 4.1472 1.8890 0.6523 7 6 4.1432 0.8785 -1.2280 8 7 3.4061 0.3375 -2.1734 9 14 6.0048 0.8815 -1.3819 10 1 6.5975 0.1475 -0.2351 11 1 6.3977 0.2169 -2.6505 12 1 6.4994 2.2817 -1.3823 13 7 1.6524 2.0975 1.2518 14 6 0.4351 2.6644 1.3670 15 8 -0.3397 2.6319 0.4345 16 6 0.0362 3.3376 2.6549 17 1 0.7414 4.1318 2.9004 18 6 -0.0322 2.3054 3.8007 19 7 -1.1911 2.7367 4.6244 20 6 -2.2052 3.1700 3.6289 21 6 -1.3935 3.9059 2.5420 22 1 -1.8060 3.6994 1.5545 23 8 -1.3896 5.3127 2.7931 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 1.8934 -0.5139 0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 3.8292 -0.0602 -2.9503 30 1 2.2720 2.1231 1.9978 31 1 -0.2007 1.3051 3.4018 32 1 0.8839 2.3310 4.3908 33 1 -1.5389 1.9743 5.1864 34 1 -2.9251 3.8466 4.0894 35 1 -2.7136 2.3051 3.2030 36 1 -2.2626 5.7247 2.7361 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001220898718.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:15:43 Heat of formation + Delta-G solvation = -116.798580 kcal Electronic energy + Delta-G solvation = -18322.857881 eV Core-core repulsion = 15419.427283 eV Total energy + Delta-G solvation = -2903.430598 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 242.142 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.34088 -39.20104 -36.90301 -36.34062 -34.32943 -32.99581 -31.13043 -29.24698 -28.69284 -25.14504 -23.61824 -22.74389 -21.50222 -20.79263 -19.31061 -18.26657 -17.75316 -17.25520 -16.80330 -16.35435 -15.98272 -15.86152 -14.79879 -14.60019 -14.51215 -14.27159 -13.91121 -13.61520 -13.47780 -13.18184 -12.96871 -12.83545 -12.67871 -12.57770 -12.19602 -12.06648 -11.80332 -11.60058 -11.08148 -10.99461 -10.68120 -10.51548 -9.68469 -9.61975 -8.16884 -6.34318 1.44858 1.46459 1.54165 1.75897 2.30816 2.51571 3.12458 3.21437 3.38208 3.52151 3.67774 4.01607 4.16168 4.32988 4.47476 4.54105 4.57342 4.67132 4.73290 4.76903 4.87488 4.92223 5.04683 5.24054 5.41968 5.53394 5.54752 5.60678 5.78159 5.91056 6.16007 6.32761 6.73346 6.87647 6.94665 7.32138 7.52812 8.88268 Molecular weight = 242.14amu Principal moments of inertia in cm(-1) A = 0.037044 B = 0.005973 C = 0.005760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 755.670314 B = 4686.349129 C = 4860.287157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.120 4.120 3 C 0.278 3.722 4 H -0.003 1.003 5 C -0.550 4.550 6 H 0.071 0.929 7 C 0.017 3.983 8 N -0.915 5.915 9 Si 0.969 3.031 10 H -0.264 1.264 11 H -0.286 1.286 12 H -0.273 1.273 13 N -0.700 5.700 14 C 0.508 3.492 15 O -0.584 6.584 16 C -0.107 4.107 17 H 0.113 0.887 18 C 0.054 3.946 19 N -0.658 5.658 20 C 0.012 3.988 21 C 0.107 3.893 22 H 0.068 0.932 23 O -0.571 6.571 24 H 0.046 0.954 25 H 0.044 0.956 26 H 0.024 0.976 27 H 0.042 0.958 28 H 0.071 0.929 29 H 0.265 0.735 30 H 0.404 0.596 31 H 0.044 0.956 32 H 0.108 0.892 33 H 0.352 0.648 34 H 0.107 0.893 35 H 0.053 0.947 36 H 0.396 0.604 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.795 2.951 12.885 15.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.159 4.159 3 C 0.174 3.826 4 H 0.015 0.985 5 C -0.588 4.588 6 H 0.089 0.911 7 C -0.184 4.184 8 N -0.553 5.553 9 Si 0.794 3.206 10 H -0.188 1.188 11 H -0.212 1.212 12 H -0.198 1.198 13 N -0.348 5.348 14 C 0.295 3.705 15 O -0.465 6.465 16 C -0.129 4.129 17 H 0.131 0.869 18 C -0.076 4.076 19 N -0.288 5.288 20 C -0.118 4.118 21 C 0.047 3.953 22 H 0.086 0.914 23 O -0.380 6.380 24 H 0.065 0.935 25 H 0.063 0.937 26 H 0.044 0.956 27 H 0.061 0.939 28 H 0.090 0.910 29 H 0.074 0.926 30 H 0.238 0.762 31 H 0.063 0.937 32 H 0.127 0.873 33 H 0.169 0.831 34 H 0.126 0.874 35 H 0.071 0.929 36 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges -7.427 3.380 12.331 14.787 hybrid contribution 0.265 -0.817 -0.870 1.222 sum -7.162 2.563 11.461 13.756 Atomic orbital electron populations 1.21672 0.96953 0.99148 1.00205 1.21775 0.93763 0.99006 1.01390 1.18386 0.93635 0.89265 0.81271 0.98504 1.21561 0.91485 1.39016 1.06785 0.91089 1.25753 1.03279 0.94341 0.94989 1.70035 1.37140 1.38328 1.09827 0.85439 0.79152 0.78400 0.77599 1.18844 1.21172 1.19807 1.46230 1.15259 1.55675 1.17602 1.20704 0.81982 0.78352 0.89500 1.90628 1.52414 1.61256 1.42200 1.21952 0.99223 0.99218 0.92533 0.86885 1.22833 0.97367 0.94870 0.92518 1.63736 1.05874 1.39592 1.19620 1.23646 0.95167 1.00041 0.92955 1.22372 0.93611 0.81556 0.97762 0.91413 1.86467 1.36874 1.20462 1.94171 0.93516 0.93745 0.95636 0.93881 0.91036 0.92574 0.76166 0.93733 0.87334 0.83129 0.87443 0.92881 0.75389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.38 8.51 71.98 0.61 -4.77 16 2 C -0.12 -5.83 5.45 30.59 0.17 -5.67 16 3 C 0.28 14.12 2.24 44.24 0.10 14.22 16 4 H 0.00 -0.18 7.58 -2.39 -0.02 -0.20 16 5 C -0.55 -28.97 8.73 25.60 0.22 -28.75 16 6 H 0.07 3.50 7.74 -2.91 -0.02 3.48 16 7 C 0.02 0.89 5.29 84.65 0.45 1.34 16 8 N -0.92 -52.16 11.29 21.45 0.24 -51.92 16 9 Si 0.97 41.92 29.54 68.60 2.03 43.94 16 10 H -0.26 -10.82 7.11 99.48 0.71 -10.12 16 11 H -0.29 -12.30 7.11 99.48 0.71 -11.59 16 12 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 13 N -0.70 -28.48 5.00 -446.10 -2.23 -30.71 16 14 C 0.51 19.86 5.57 87.66 0.49 20.35 16 15 O -0.58 -27.18 12.39 -3.03 -0.04 -27.22 16 16 C -0.11 -3.20 3.26 -10.65 -0.03 -3.23 16 17 H 0.11 3.37 7.98 -2.39 -0.02 3.35 16 18 C 0.05 1.27 6.98 86.44 0.60 1.87 16 19 N -0.66 -13.53 7.63 -500.93 -3.82 -17.35 16 20 C 0.01 0.24 7.21 86.43 0.62 0.86 16 21 C 0.11 2.93 4.01 31.47 0.13 3.06 16 22 H 0.07 2.19 6.46 -2.39 -0.02 2.17 16 23 O -0.57 -14.67 13.26 -148.98 -1.98 -16.64 16 24 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 25 H 0.04 1.85 5.64 -2.39 -0.01 1.84 16 26 H 0.02 1.21 7.85 -2.39 -0.02 1.19 16 27 H 0.04 1.95 8.14 -2.39 -0.02 1.93 16 28 H 0.07 3.90 5.95 -2.39 -0.01 3.89 16 29 H 0.27 14.36 8.31 -92.71 -0.77 13.59 16 30 H 0.40 14.00 8.54 -92.70 -0.79 13.21 16 31 H 0.04 1.11 7.85 -2.39 -0.02 1.09 16 32 H 0.11 2.19 8.14 -2.39 -0.02 2.17 16 33 H 0.35 5.58 8.92 -89.69 -0.80 4.78 16 34 H 0.11 1.77 8.08 -2.39 -0.02 1.75 16 35 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 36 H 0.40 6.18 9.12 -74.05 -0.68 5.50 16 Total: -1.00 -67.03 290.27 -3.59 -70.62 By element: Atomic # 1 Polarization: 31.15 SS G_CDS: -1.15 Total: 30.00 kcal Atomic # 6 Polarization: -4.08 SS G_CDS: 3.36 Total: -0.72 kcal Atomic # 7 Polarization: -94.17 SS G_CDS: -5.81 Total: -99.98 kcal Atomic # 8 Polarization: -41.85 SS G_CDS: -2.01 Total: -43.87 kcal Atomic # 14 Polarization: 41.92 SS G_CDS: 2.03 Total: 43.94 kcal Total: -67.03 -3.59 -70.62 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001220898718.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.175 kcal (2) G-P(sol) polarization free energy of solvation -67.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.624 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds