Wall clock time and date at job start Thu Apr 9 2020 12:15:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.45194 * 109.47339 * 2 1 4 4 C 1.34641 * 117.00323 * 179.97438 * 3 2 1 5 5 O 1.21515 * 119.99975 * 0.02562 * 4 3 2 6 6 N 1.34770 * 120.00301 * 179.97438 * 4 3 2 7 7 C 1.47027 * 125.64835 * 359.70106 * 6 4 3 8 8 C 1.54331 * 107.26442 * 178.84548 * 7 6 4 9 9 C 1.55158 * 103.02380 * 338.13989 * 8 7 6 10 10 H 1.09004 * 111.00008 * 277.23532 * 9 8 7 11 11 N 1.46902 * 111.03623 * 153.39928 * 9 8 7 12 12 C 1.46904 * 110.99834 * 161.33310 * 11 9 8 13 13 C 1.50696 * 109.46967 * 179.97438 * 12 11 9 14 14 H 1.07999 * 119.99876 * 0.02562 * 13 12 11 15 15 C 1.37882 * 119.99571 * 179.97438 * 13 12 11 16 16 N 1.31509 * 120.00502 * 0.02562 * 15 13 12 17 17 Si 1.86801 * 119.99508 * 180.02562 * 15 13 12 18 18 H 1.48504 * 109.47187 * 90.00161 * 17 15 13 19 19 H 1.48506 * 109.46714 * 209.99994 * 17 15 13 20 20 H 1.48498 * 109.47322 * 330.00000 * 17 15 13 21 21 C 1.47430 * 125.65220 * 180.02562 * 6 4 3 22 22 H 1.09002 * 109.47153 * 59.99705 * 1 2 3 23 23 H 1.09001 * 109.46832 * 299.99896 * 1 2 3 24 24 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.47153 * 120.00295 * 2 1 3 26 26 H 1.08998 * 109.47533 * 239.99925 * 2 1 3 27 27 H 1.08997 * 109.88064 * 298.38992 * 7 6 4 28 28 H 1.08997 * 109.88186 * 59.55496 * 7 6 4 29 29 H 1.09005 * 110.84895 * 219.67038 * 8 7 6 30 30 H 1.08997 * 110.51682 * 96.45231 * 8 7 6 31 31 H 1.00893 * 111.00521 * 37.37691 * 11 9 8 32 32 H 1.08995 * 109.46881 * 299.99686 * 12 11 9 33 33 H 1.09007 * 109.47210 * 59.99157 * 12 11 9 34 34 H 0.96999 * 120.00331 * 180.02562 * 16 15 13 35 35 H 1.09002 * 110.36365 * 322.93632 * 21 6 4 36 36 H 1.08999 * 110.36705 * 85.14548 * 21 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3488 1.5453 0.0005 5 8 4.0890 0.5817 0.0005 6 7 3.8640 2.7907 0.0000 7 6 3.0875 4.0392 -0.0073 8 6 4.0967 5.2064 0.0247 9 6 5.3737 4.5485 0.6111 10 1 5.3283 4.5091 1.6995 11 7 6.5828 5.2519 0.1623 12 6 7.7264 4.9389 1.0297 13 6 8.9456 5.6762 0.5390 14 1 8.8776 6.3139 -0.3300 15 6 10.1476 5.5376 1.2002 16 7 10.2302 4.7615 2.2587 17 14 11.6587 6.4521 0.5924 18 1 11.7325 7.7802 1.2529 19 1 12.8767 5.6681 0.9197 20 1 11.5682 6.6352 -0.8785 21 6 5.2994 3.1268 0.0000 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 -1.0277 -0.0005 25 1 1.8933 -0.5139 0.8900 26 1 1.8934 -0.5138 -0.8899 27 1 2.4827 4.0942 -0.9124 28 1 2.4460 4.0819 0.8729 29 1 3.7428 6.0075 0.6737 30 1 4.2825 5.5785 -0.9828 31 1 6.4259 6.2474 0.1161 32 1 7.5023 5.2460 2.0512 33 1 7.9171 3.8659 1.0065 34 1 11.0757 4.6642 2.7240 35 1 5.8546 2.4196 0.6162 36 1 5.6886 3.1287 -1.0182 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260029708.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:15:52 Heat of formation + Delta-G solvation = -80.921069 kcal Electronic energy + Delta-G solvation = -17332.381688 eV Core-core repulsion = 14430.506856 eV Total energy + Delta-G solvation = -2901.874832 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 242.142 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.43180 -38.39635 -36.27777 -34.67123 -32.55804 -31.78086 -30.32294 -28.33578 -26.09132 -23.93375 -22.82664 -21.59748 -20.78262 -19.97730 -18.07492 -16.92493 -16.72703 -16.31371 -15.77543 -14.66865 -14.47387 -14.19429 -13.71454 -13.64231 -13.29575 -12.96933 -12.76517 -12.65141 -12.20041 -11.92012 -11.72679 -11.58881 -11.52417 -10.92953 -10.79685 -10.66051 -10.58482 -10.48424 -10.38409 -9.90094 -9.20853 -8.64339 -8.50673 -7.47150 -6.05236 -4.07873 2.12099 2.91452 3.31068 3.37576 3.41844 3.93435 4.40983 4.65963 4.76736 4.80941 4.85115 4.97028 5.12095 5.25299 5.30963 5.35556 5.53800 5.57538 5.67924 5.72912 5.78968 5.95363 6.10154 6.16937 6.23743 6.36678 6.45761 7.19004 7.34227 7.55246 7.73719 8.07671 8.28764 8.36288 8.51658 9.00780 9.57279 11.05803 Molecular weight = 242.14amu Principal moments of inertia in cm(-1) A = 0.050595 B = 0.004074 C = 0.003872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 553.285843 B = 6871.528008 C = 7229.833112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.081 3.919 3 O -0.372 6.372 4 C 0.663 3.337 5 O -0.572 6.572 6 N -0.601 5.601 7 C 0.110 3.890 8 C -0.134 4.134 9 C 0.075 3.925 10 H 0.054 0.946 11 N -0.677 5.677 12 C 0.192 3.808 13 C -0.517 4.517 14 H 0.063 0.937 15 C 0.056 3.944 16 N -0.896 5.896 17 Si 0.900 3.100 18 H -0.281 1.281 19 H -0.287 1.287 20 H -0.273 1.273 21 C 0.135 3.865 22 H 0.065 0.935 23 H 0.066 0.934 24 H 0.080 0.920 25 H 0.069 0.931 26 H 0.069 0.931 27 H 0.069 0.931 28 H 0.067 0.933 29 H 0.081 0.919 30 H 0.087 0.913 31 H 0.336 0.664 32 H -0.011 1.011 33 H 0.030 0.970 34 H 0.262 0.738 35 H 0.079 0.921 36 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.961 -3.561 -3.742 19.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.006 3.994 3 O -0.286 6.286 4 C 0.417 3.583 5 O -0.462 6.462 6 N -0.343 5.343 7 C -0.013 4.013 8 C -0.172 4.172 9 C -0.037 4.037 10 H 0.072 0.928 11 N -0.309 5.309 12 C 0.066 3.934 13 C -0.555 4.555 14 H 0.081 0.919 15 C -0.146 4.146 16 N -0.536 5.536 17 Si 0.728 3.272 18 H -0.207 1.207 19 H -0.212 1.212 20 H -0.197 1.197 21 C 0.014 3.986 22 H 0.085 0.915 23 H 0.085 0.915 24 H 0.099 0.901 25 H 0.088 0.912 26 H 0.087 0.913 27 H 0.087 0.913 28 H 0.086 0.914 29 H 0.099 0.901 30 H 0.105 0.895 31 H 0.154 0.846 32 H 0.007 0.993 33 H 0.048 0.952 34 H 0.072 0.928 35 H 0.098 0.902 36 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -18.517 -4.543 -4.070 19.496 hybrid contribution 0.685 0.783 0.623 1.213 sum -17.832 -3.760 -3.447 18.547 Atomic orbital electron populations 1.21816 0.92701 1.02907 1.03436 1.22913 0.94622 0.79053 1.02786 1.86226 1.22279 1.32858 1.87257 1.17499 0.80926 0.83062 0.76825 1.91009 1.59853 1.38974 1.56317 1.47146 1.08935 1.02661 1.75511 1.21984 0.94436 0.83088 1.01800 1.22843 0.94730 0.96645 1.03008 1.22574 0.90804 0.93267 0.97070 0.92819 1.60561 1.02833 1.12501 1.55011 1.19649 0.86833 0.97448 0.89495 1.21152 0.93658 1.27753 1.12956 0.91855 1.24994 0.99096 0.95521 0.94943 1.69958 1.26180 1.38106 1.19318 0.86472 0.82114 0.79462 0.79197 1.20735 1.21233 1.19733 1.22326 0.77103 0.96518 1.02640 0.91550 0.91531 0.90113 0.91235 0.91253 0.91291 0.91444 0.90080 0.89472 0.84560 0.99344 0.95160 0.92832 0.90227 0.89914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.08 10.29 37.16 0.38 -0.70 16 2 C 0.08 0.86 6.19 37.16 0.23 1.10 16 3 O -0.37 -5.12 9.82 -40.33 -0.40 -5.52 16 4 C 0.66 11.12 8.62 54.05 0.47 11.59 16 5 O -0.57 -11.40 16.39 -19.28 -0.32 -11.72 16 6 N -0.60 -9.45 3.33 -176.28 -0.59 -10.04 16 7 C 0.11 1.34 6.90 -3.06 -0.02 1.32 16 8 C -0.13 -1.65 6.42 -24.89 -0.16 -1.81 16 9 C 0.07 1.25 3.32 -65.56 -0.22 1.03 16 10 H 0.05 0.96 7.92 -51.93 -0.41 0.55 16 11 N -0.68 -13.63 6.36 -105.71 -0.67 -14.30 16 12 C 0.19 4.90 5.31 -4.98 -0.03 4.88 16 13 C -0.52 -14.37 9.32 -34.44 -0.32 -14.69 16 14 H 0.06 1.72 7.81 -52.49 -0.41 1.31 16 15 C 0.06 1.59 5.46 -17.82 -0.10 1.50 16 16 N -0.90 -26.72 13.29 55.43 0.74 -25.98 16 17 Si 0.90 21.53 29.54 -169.99 -5.02 16.51 16 18 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 19 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 20 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 21 C 0.14 2.38 6.56 -2.52 -0.02 2.36 16 22 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 23 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 24 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 25 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 26 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 27 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.09 1.05 8.14 -51.93 -0.42 0.62 16 31 H 0.34 6.28 8.52 -39.30 -0.33 5.94 16 32 H -0.01 -0.30 8.09 -51.93 -0.42 -0.72 16 33 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 35 H 0.08 1.56 8.04 -51.93 -0.42 1.14 16 36 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 LS Contribution 306.67 15.07 4.62 4.62 Total: -1.00 -32.16 306.67 -7.19 -39.36 By element: Atomic # 1 Polarization: 6.28 SS G_CDS: -5.78 Total: 0.50 kcal Atomic # 6 Polarization: 6.34 SS G_CDS: 0.22 Total: 6.56 kcal Atomic # 7 Polarization: -49.80 SS G_CDS: -0.52 Total: -50.32 kcal Atomic # 8 Polarization: -16.53 SS G_CDS: -0.71 Total: -17.24 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -32.16 -7.19 -39.36 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260029708.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.563 kcal (2) G-P(sol) polarization free energy of solvation -32.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.358 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds