Wall clock time and date at job start Thu Apr 9 2020 12:15:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.45194 * 109.47339 * 2 1 4 4 C 1.34641 * 117.00323 * 179.97438 * 3 2 1 5 5 O 1.21515 * 119.99975 * 0.02562 * 4 3 2 6 6 N 1.34770 * 120.00301 * 179.97438 * 4 3 2 7 7 C 1.47027 * 125.64835 * 359.70106 * 6 4 3 8 8 C 1.54331 * 107.26442 * 178.84548 * 7 6 4 9 9 C 1.55158 * 103.02380 * 338.13989 * 8 7 6 10 10 H 1.09004 * 111.00008 * 277.23532 * 9 8 7 11 11 N 1.46902 * 111.03623 * 153.39928 * 9 8 7 12 12 C 1.46904 * 110.99834 * 161.33310 * 11 9 8 13 13 C 1.50696 * 109.46967 * 179.97438 * 12 11 9 14 14 H 1.07999 * 119.99876 * 0.02562 * 13 12 11 15 15 C 1.37882 * 119.99571 * 179.97438 * 13 12 11 16 16 N 1.31509 * 120.00502 * 0.02562 * 15 13 12 17 17 Si 1.86801 * 119.99508 * 180.02562 * 15 13 12 18 18 H 1.48504 * 109.47187 * 90.00161 * 17 15 13 19 19 H 1.48506 * 109.46714 * 209.99994 * 17 15 13 20 20 H 1.48498 * 109.47322 * 330.00000 * 17 15 13 21 21 C 1.47430 * 125.65220 * 180.02562 * 6 4 3 22 22 H 1.09002 * 109.47153 * 59.99705 * 1 2 3 23 23 H 1.09001 * 109.46832 * 299.99896 * 1 2 3 24 24 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.47153 * 120.00295 * 2 1 3 26 26 H 1.08998 * 109.47533 * 239.99925 * 2 1 3 27 27 H 1.08997 * 109.88064 * 298.38992 * 7 6 4 28 28 H 1.08997 * 109.88186 * 59.55496 * 7 6 4 29 29 H 1.09005 * 110.84895 * 219.67038 * 8 7 6 30 30 H 1.08997 * 110.51682 * 96.45231 * 8 7 6 31 31 H 1.00893 * 111.00521 * 37.37691 * 11 9 8 32 32 H 1.08995 * 109.46881 * 299.99686 * 12 11 9 33 33 H 1.09007 * 109.47210 * 59.99157 * 12 11 9 34 34 H 0.96999 * 120.00331 * 180.02562 * 16 15 13 35 35 H 1.09002 * 110.36365 * 322.93632 * 21 6 4 36 36 H 1.08999 * 110.36705 * 85.14548 * 21 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3488 1.5453 0.0005 5 8 4.0890 0.5817 0.0005 6 7 3.8640 2.7907 0.0000 7 6 3.0875 4.0392 -0.0073 8 6 4.0967 5.2064 0.0247 9 6 5.3737 4.5485 0.6111 10 1 5.3283 4.5091 1.6995 11 7 6.5828 5.2519 0.1623 12 6 7.7264 4.9389 1.0297 13 6 8.9456 5.6762 0.5390 14 1 8.8776 6.3139 -0.3300 15 6 10.1476 5.5376 1.2002 16 7 10.2302 4.7615 2.2587 17 14 11.6587 6.4521 0.5924 18 1 11.7325 7.7802 1.2529 19 1 12.8767 5.6681 0.9197 20 1 11.5682 6.6352 -0.8785 21 6 5.2994 3.1268 0.0000 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 -1.0277 -0.0005 25 1 1.8933 -0.5139 0.8900 26 1 1.8934 -0.5138 -0.8899 27 1 2.4827 4.0942 -0.9124 28 1 2.4460 4.0819 0.8729 29 1 3.7428 6.0075 0.6737 30 1 4.2825 5.5785 -0.9828 31 1 6.4259 6.2474 0.1161 32 1 7.5023 5.2460 2.0512 33 1 7.9171 3.8659 1.0065 34 1 11.0757 4.6642 2.7240 35 1 5.8546 2.4196 0.6162 36 1 5.6886 3.1287 -1.0182 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260029708.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:15:52 Heat of formation + Delta-G solvation = -104.198967 kcal Electronic energy + Delta-G solvation = -17333.391094 eV Core-core repulsion = 14430.506856 eV Total energy + Delta-G solvation = -2902.884237 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 242.142 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.68083 -39.65284 -37.55385 -36.37728 -34.48145 -32.72398 -31.60397 -29.78519 -27.94930 -25.20586 -23.91986 -23.29614 -21.99101 -21.35194 -19.35027 -18.44112 -18.09357 -17.92320 -17.02872 -16.65029 -15.66614 -15.33697 -15.31698 -14.90477 -14.64210 -14.24927 -14.00385 -13.88098 -13.53162 -13.46353 -13.00381 -12.89549 -12.68947 -12.52135 -12.44175 -12.24536 -11.86970 -11.82992 -11.69772 -11.55833 -11.25742 -10.66434 -9.89995 -9.22695 -8.21868 -6.33151 0.93689 1.42684 1.44729 1.56279 1.60220 2.40920 2.85706 3.12204 3.40963 3.58666 3.68269 4.00907 4.09546 4.13971 4.26248 4.33761 4.43818 4.58826 4.68849 4.76289 4.82733 4.93145 4.95974 5.04906 5.08234 5.11092 5.25533 5.25942 5.35729 5.63196 6.01714 6.29978 6.41261 6.71252 6.90003 7.08402 7.38111 8.89845 Molecular weight = 242.14amu Principal moments of inertia in cm(-1) A = 0.050595 B = 0.004074 C = 0.003872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 553.285843 B = 6871.528008 C = 7229.833112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.070 3.930 3 O -0.363 6.363 4 C 0.659 3.341 5 O -0.614 6.614 6 N -0.602 5.602 7 C 0.109 3.891 8 C -0.116 4.116 9 C 0.072 3.928 10 H 0.043 0.957 11 N -0.672 5.672 12 C 0.208 3.792 13 C -0.534 4.534 14 H 0.070 0.930 15 C -0.001 4.001 16 N -0.936 5.936 17 Si 0.974 3.026 18 H -0.270 1.270 19 H -0.286 1.286 20 H -0.263 1.263 21 C 0.140 3.860 22 H 0.072 0.928 23 H 0.070 0.930 24 H 0.104 0.896 25 H 0.064 0.936 26 H 0.066 0.934 27 H 0.093 0.907 28 H 0.085 0.915 29 H 0.109 0.891 30 H 0.097 0.903 31 H 0.349 0.651 32 H -0.035 1.035 33 H -0.004 1.004 34 H 0.264 0.736 35 H 0.045 0.955 36 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.579 -2.084 -4.770 21.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.004 4.004 3 O -0.277 6.277 4 C 0.414 3.586 5 O -0.506 6.506 6 N -0.343 5.343 7 C -0.013 4.013 8 C -0.154 4.154 9 C -0.039 4.039 10 H 0.061 0.939 11 N -0.304 5.304 12 C 0.080 3.920 13 C -0.572 4.572 14 H 0.088 0.912 15 C -0.199 4.199 16 N -0.576 5.576 17 Si 0.798 3.202 18 H -0.195 1.195 19 H -0.212 1.212 20 H -0.187 1.187 21 C 0.017 3.983 22 H 0.091 0.909 23 H 0.089 0.911 24 H 0.123 0.877 25 H 0.082 0.918 26 H 0.085 0.915 27 H 0.111 0.889 28 H 0.104 0.896 29 H 0.128 0.872 30 H 0.116 0.884 31 H 0.168 0.832 32 H -0.018 1.018 33 H 0.014 0.986 34 H 0.073 0.927 35 H 0.064 0.936 36 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -20.197 -3.034 -5.113 21.054 hybrid contribution 1.101 0.254 0.949 1.476 sum -19.096 -2.780 -4.164 19.741 Atomic orbital electron populations 1.21831 0.89445 1.04648 1.03900 1.23299 0.97009 0.77628 1.02493 1.86253 1.20045 1.34719 1.86700 1.17685 0.81711 0.82835 0.76349 1.90975 1.61056 1.40452 1.58153 1.47168 1.08463 1.03712 1.74949 1.22254 0.94231 0.80883 1.03911 1.22823 0.91668 0.97136 1.03789 1.22558 0.91639 0.93126 0.96622 0.93947 1.60337 1.02907 1.13608 1.53587 1.19254 0.88665 0.95012 0.89088 1.21557 0.94643 1.27876 1.13128 0.91194 1.25982 1.02631 0.96327 0.94980 1.70099 1.27141 1.39681 1.20713 0.85313 0.77588 0.78246 0.79028 1.19506 1.21152 1.18701 1.22078 0.78371 0.96371 1.01447 0.90944 0.91124 0.87706 0.91780 0.91508 0.88865 0.89637 0.87226 0.88408 0.83183 1.01769 0.98594 0.92689 0.93589 0.90700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.67 10.29 71.98 0.74 -0.93 16 2 C 0.07 1.43 6.19 71.98 0.45 1.87 16 3 O -0.36 -9.60 9.82 -55.50 -0.55 -10.15 16 4 C 0.66 22.16 8.62 129.79 1.12 23.28 16 5 O -0.61 -25.33 16.39 19.79 0.32 -25.00 16 6 N -0.60 -18.62 3.33 -942.04 -3.13 -21.75 16 7 C 0.11 2.33 6.90 86.73 0.60 2.92 16 8 C -0.12 -2.53 6.42 31.79 0.20 -2.32 16 9 C 0.07 2.40 3.32 46.31 0.15 2.55 16 10 H 0.04 1.53 7.92 -2.38 -0.02 1.51 16 11 N -0.67 -27.07 6.36 -488.37 -3.11 -30.18 16 12 C 0.21 10.95 5.31 85.55 0.45 11.41 16 13 C -0.53 -29.97 9.32 25.60 0.24 -29.73 16 14 H 0.07 3.75 7.81 -2.91 -0.02 3.73 16 15 C 0.00 -0.06 5.46 84.66 0.46 0.40 16 16 N -0.94 -57.04 13.29 21.45 0.28 -56.76 16 17 Si 0.97 44.10 29.54 68.60 2.03 46.13 16 18 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 19 H -0.29 -12.82 7.11 99.48 0.71 -12.11 16 20 H -0.26 -11.40 7.11 99.48 0.71 -10.69 16 21 C 0.14 5.05 6.56 86.86 0.57 5.62 16 22 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 23 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 24 H 0.10 0.77 8.14 -2.38 -0.02 0.75 16 25 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 26 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 27 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 28 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 29 H 0.11 1.84 8.14 -2.38 -0.02 1.82 16 30 H 0.10 1.99 8.14 -2.39 -0.02 1.97 16 31 H 0.35 12.60 8.52 -89.70 -0.76 11.84 16 32 H -0.04 -2.00 8.09 -2.39 -0.02 -2.02 16 33 H 0.00 -0.24 8.14 -2.38 -0.02 -0.26 16 34 H 0.26 15.15 8.31 -92.71 -0.77 14.38 16 35 H 0.05 1.94 8.04 -2.39 -0.02 1.92 16 36 H 0.07 2.80 8.14 -2.39 -0.02 2.78 16 Total: -1.00 -71.65 306.67 1.13 -70.52 By element: Atomic # 1 Polarization: 11.82 SS G_CDS: 0.29 Total: 12.11 kcal Atomic # 6 Polarization: 10.08 SS G_CDS: 4.99 Total: 15.07 kcal Atomic # 7 Polarization: -102.73 SS G_CDS: -5.96 Total: -108.68 kcal Atomic # 8 Polarization: -34.93 SS G_CDS: -0.22 Total: -35.15 kcal Atomic # 14 Polarization: 44.10 SS G_CDS: 2.03 Total: 46.13 kcal Total: -71.65 1.13 -70.52 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260029708.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.674 kcal (2) G-P(sol) polarization free energy of solvation -71.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.525 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds