Wall clock time and date at job start Thu Apr 9 2020 12:17:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34230 * 116.99603 * 2 1 4 4 O 1.20826 * 120.00447 * 359.97438 * 3 2 1 5 5 C 1.50708 * 119.99756 * 180.02562 * 3 2 1 6 6 H 1.08996 * 108.37061 * 302.27841 * 5 3 2 7 7 C 1.52472 * 108.55380 * 184.55287 * 5 3 2 8 8 N 1.43913 * 105.41565 * 148.44372 * 7 5 3 9 9 C 1.46897 * 111.00410 * 223.42613 * 8 7 5 10 10 C 1.48822 * 112.04359 * 98.70651 * 8 7 5 11 11 C 1.54000 * 110.61149 * 320.92477 * 10 8 7 12 12 N 1.43653 * 116.50662 * 318.32039 * 11 10 8 13 13 C 1.36940 * 120.55010 * 269.27768 * 12 11 10 14 14 H 1.07998 * 120.00493 * 145.83014 * 13 12 11 15 15 C 1.38810 * 119.99778 * 325.82281 * 13 12 11 16 16 N 1.31622 * 120.00296 * 332.15277 * 15 13 12 17 17 Si 1.86808 * 119.99786 * 152.14974 * 15 13 12 18 18 H 1.48498 * 109.46872 * 180.02562 * 17 15 13 19 19 H 1.48494 * 109.46881 * 299.99999 * 17 15 13 20 20 H 1.48491 * 109.47017 * 60.00431 * 17 15 13 21 21 C 1.46648 * 108.55406 * 59.99725 * 5 3 2 22 22 H 1.09002 * 109.46992 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.47000 * 300.00034 * 1 2 3 24 24 H 1.09003 * 109.46976 * 60.00486 * 1 2 3 25 25 H 1.09001 * 110.25146 * 267.41774 * 7 5 3 26 26 H 1.09001 * 110.24999 * 29.47436 * 7 5 3 27 27 H 1.09000 * 109.46816 * 60.00212 * 9 8 7 28 28 H 1.08996 * 109.47548 * 180.02562 * 9 8 7 29 29 H 1.09002 * 109.47256 * 300.00599 * 9 8 7 30 30 H 1.08998 * 109.23781 * 81.31136 * 10 8 7 31 31 H 1.09005 * 109.23525 * 200.73439 * 10 8 7 32 32 H 1.09004 * 107.86109 * 196.56310 * 11 10 8 33 33 H 1.09001 * 108.06299 * 80.23661 * 11 10 8 34 34 H 0.97001 * 119.99828 * 354.21118 * 16 15 13 35 35 H 1.09000 * 109.95343 * 59.97101 * 21 5 3 36 36 H 1.08999 * 109.95296 * 298.69986 * 21 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2094 -0.0005 5 6 3.5663 1.2750 -0.0006 6 1 3.9386 0.7411 0.8737 7 6 3.9754 2.7393 0.1143 8 7 5.2202 2.7332 0.8365 9 6 5.2437 3.7923 1.8542 10 6 6.3938 2.8408 -0.0724 11 6 6.1674 2.0122 -1.3505 12 7 5.5661 0.7190 -1.1782 13 6 6.3450 -0.3909 -0.9869 14 1 5.9989 -1.1900 -0.3482 15 6 7.5794 -0.4889 -1.6142 16 7 7.7889 0.1324 -2.7555 17 14 8.9434 -1.5026 -0.8384 18 1 10.1524 -1.4462 -1.6988 19 1 9.2654 -0.9544 0.5035 20 1 8.4968 -2.9123 -0.7033 21 6 4.0682 0.6054 -1.2049 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8901 25 1 4.1164 3.1705 -0.8768 26 1 3.2213 3.2994 0.6672 27 1 4.4289 3.6351 2.5609 28 1 6.1955 3.7654 2.3847 29 1 5.1242 4.7624 1.3718 30 1 6.5445 3.8861 -0.3420 31 1 7.2811 2.4710 0.4416 32 1 7.1338 1.8752 -1.8357 33 1 5.5359 2.5933 -2.0226 34 1 7.0578 0.5888 -3.2005 35 1 3.6740 1.0959 -2.0949 36 1 3.7747 -0.4443 -1.1966 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001473556310.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:17:02 Heat of formation + Delta-G solvation = -43.587478 kcal Electronic energy + Delta-G solvation = -18710.752332 eV Core-core repulsion = 15810.496406 eV Total energy + Delta-G solvation = -2900.255926 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 242.142 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.49690 -38.34543 -36.22594 -35.04143 -33.12037 -30.67795 -28.30530 -27.71121 -25.87160 -24.24898 -23.88030 -21.56037 -19.85555 -19.37397 -17.41917 -17.29727 -16.43674 -16.17922 -15.30262 -14.78483 -14.18671 -14.02979 -13.58345 -13.31355 -13.27294 -13.00259 -12.79807 -12.33848 -12.10548 -11.88646 -11.35453 -11.20596 -10.83964 -10.70178 -10.64972 -10.43622 -10.29132 -10.07791 -10.01548 -9.99388 -9.34019 -8.37647 -7.77055 -6.86388 -6.03076 -3.34778 2.49114 2.95451 3.51314 3.55523 3.72834 4.45621 4.58113 4.96051 5.15875 5.21441 5.27187 5.34811 5.45099 5.48878 5.58231 5.61185 5.73914 5.90920 5.98376 6.06604 6.08751 6.15759 6.31305 6.35041 6.56595 6.61485 6.78109 6.91206 7.13379 7.59617 7.68503 8.00983 8.06234 8.58757 9.06760 9.80729 10.25808 11.14621 Molecular weight = 242.14amu Principal moments of inertia in cm(-1) A = 0.023394 B = 0.008328 C = 0.006856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1196.613752 B = 3361.424698 C = 4082.929090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.356 6.356 3 C 0.465 3.535 4 O -0.523 6.523 5 C -0.082 4.082 6 H 0.119 0.881 7 C 0.076 3.924 8 N -0.535 5.535 9 C 0.028 3.972 10 C 0.036 3.964 11 C 0.134 3.866 12 N -0.572 5.572 13 C -0.342 4.342 14 H 0.053 0.947 15 C -0.020 4.020 16 N -0.903 5.903 17 Si 1.062 2.938 18 H -0.286 1.286 19 H -0.292 1.292 20 H -0.292 1.292 21 C 0.143 3.857 22 H 0.097 0.903 23 H 0.058 0.942 24 H 0.059 0.941 25 H 0.052 0.948 26 H 0.075 0.925 27 H 0.060 0.940 28 H 0.064 0.936 29 H 0.018 0.982 30 H 0.025 0.975 31 H 0.070 0.930 32 H 0.085 0.915 33 H 0.017 0.983 34 H 0.269 0.731 35 H 0.029 0.971 36 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.055 3.337 5.875 11.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.272 6.272 3 C 0.308 3.692 4 O -0.412 6.412 5 C -0.103 4.103 6 H 0.136 0.864 7 C -0.053 4.053 8 N -0.259 5.259 9 C -0.120 4.120 10 C -0.094 4.094 11 C 0.006 3.994 12 N -0.293 5.293 13 C -0.471 4.471 14 H 0.071 0.929 15 C -0.223 4.223 16 N -0.543 5.543 17 Si 0.891 3.109 18 H -0.212 1.212 19 H -0.219 1.219 20 H -0.219 1.219 21 C 0.018 3.982 22 H 0.116 0.884 23 H 0.077 0.923 24 H 0.078 0.922 25 H 0.071 0.929 26 H 0.093 0.907 27 H 0.079 0.921 28 H 0.082 0.918 29 H 0.036 0.964 30 H 0.043 0.957 31 H 0.089 0.911 32 H 0.103 0.897 33 H 0.036 0.964 34 H 0.080 0.920 35 H 0.047 0.953 36 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -7.633 2.691 5.925 10.030 hybrid contribution -2.007 1.326 -0.046 2.406 sum -9.640 4.017 5.879 11.984 Atomic orbital electron populations 1.23198 0.77399 1.03298 1.02094 1.86600 1.22640 1.33933 1.83993 1.24633 0.92918 0.80837 0.70838 1.90579 1.67594 1.36472 1.46531 1.20973 0.83926 0.99986 1.05432 0.86351 1.21388 0.91716 0.93753 0.98480 1.61524 1.02447 1.45900 1.16054 1.22398 1.02030 0.92111 0.95471 1.23454 0.92522 0.97308 0.96075 1.20532 1.00553 0.85727 0.92629 1.43784 0.98791 1.02591 1.84150 1.19853 1.02495 0.98948 1.25815 0.92916 1.25882 1.00469 1.01369 0.94586 1.70790 1.36622 1.34770 1.12108 0.83574 0.76307 0.75476 0.75505 1.21209 1.21936 1.21873 1.20418 0.86532 0.99046 0.92204 0.88407 0.92314 0.92197 0.92930 0.90680 0.92120 0.91759 0.96394 0.95676 0.91115 0.89748 0.96422 0.92040 0.95297 0.90581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 10.56 101.05 1.07 1.46 16 2 O -0.36 -5.66 10.34 -39.26 -0.41 -6.06 16 3 C 0.46 8.14 7.15 36.01 0.26 8.40 16 4 O -0.52 -9.77 15.11 -18.75 -0.28 -10.05 16 5 C -0.08 -1.53 2.24 -95.07 -0.21 -1.74 16 6 H 0.12 2.36 7.86 -51.93 -0.41 1.96 16 7 C 0.08 1.38 4.64 -5.69 -0.03 1.35 16 8 N -0.54 -9.91 4.27 -243.41 -1.04 -10.95 16 9 C 0.03 0.42 9.24 60.06 0.55 0.98 16 10 C 0.04 0.72 6.06 -2.24 -0.01 0.70 16 11 C 0.13 3.08 4.41 -5.03 -0.02 3.05 16 12 N -0.57 -13.93 2.51 -175.22 -0.44 -14.37 16 13 C -0.34 -9.27 9.44 -15.06 -0.14 -9.41 16 14 H 0.05 1.46 7.97 -52.49 -0.42 1.04 16 15 C -0.02 -0.56 4.82 -17.43 -0.08 -0.64 16 16 N -0.90 -26.21 12.19 55.49 0.68 -25.53 16 17 Si 1.06 24.79 30.00 -169.99 -5.10 19.69 16 18 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 19 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 20 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 21 C 0.14 2.99 5.29 -4.98 -0.03 2.97 16 22 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 23 H 0.06 0.65 8.13 -51.93 -0.42 0.22 16 24 H 0.06 0.68 8.13 -51.93 -0.42 0.26 16 25 H 0.05 1.00 6.13 -51.93 -0.32 0.68 16 26 H 0.07 1.31 6.40 -51.93 -0.33 0.98 16 27 H 0.06 0.84 8.09 -51.93 -0.42 0.42 16 28 H 0.06 0.91 8.13 -51.93 -0.42 0.48 16 29 H 0.02 0.25 8.14 -51.93 -0.42 -0.17 16 30 H 0.03 0.45 8.00 -51.93 -0.42 0.04 16 31 H 0.07 1.49 8.14 -51.93 -0.42 1.07 16 32 H 0.09 2.18 5.15 -51.93 -0.27 1.91 16 33 H 0.02 0.39 6.89 -51.93 -0.36 0.03 16 34 H 0.27 7.87 7.21 -40.82 -0.29 7.57 16 35 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 36 H 0.08 1.61 7.86 -51.93 -0.41 1.20 16 LS Contribution 288.10 15.07 4.34 4.34 Total: -1.00 -30.03 288.10 -6.29 -36.32 By element: Atomic # 1 Polarization: 4.88 SS G_CDS: -5.39 Total: -0.51 kcal Atomic # 6 Polarization: 5.77 SS G_CDS: 1.35 Total: 7.12 kcal Atomic # 7 Polarization: -50.05 SS G_CDS: -0.80 Total: -50.85 kcal Atomic # 8 Polarization: -15.43 SS G_CDS: -0.69 Total: -16.11 kcal Atomic # 14 Polarization: 24.79 SS G_CDS: -5.10 Total: 19.69 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -30.03 -6.29 -36.32 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001473556310.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.268 kcal (2) G-P(sol) polarization free energy of solvation -30.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.320 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds