Wall clock time and date at job start Thu Apr 9 2020 12:16:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 O 1.21278 * 120.00371 * 2 1 4 4 N 1.34784 * 119.99898 * 179.97438 * 2 1 3 5 5 C 1.47154 * 120.98243 * 0.02562 * 4 2 1 6 6 C 1.53290 * 108.38143 * 230.50937 * 5 4 2 7 7 O 1.42961 * 109.22658 * 307.69928 * 6 5 4 8 8 C 1.42957 * 114.16605 * 62.57980 * 7 6 5 9 9 H 1.09002 * 109.51218 * 57.34557 * 8 7 6 10 10 C 1.53000 * 109.51036 * 177.44923 * 8 7 6 11 11 H 1.09005 * 109.47255 * 174.90348 * 10 8 7 12 12 C 1.52991 * 109.47583 * 54.89670 * 10 8 7 13 13 N 1.46501 * 109.47004 * 294.89720 * 10 8 7 14 14 C 1.36942 * 120.00186 * 205.00272 * 13 10 8 15 15 H 1.07995 * 119.99598 * 0.02562 * 14 13 10 16 16 C 1.38811 * 119.99650 * 179.97438 * 14 13 10 17 17 N 1.31612 * 120.00386 * 0.02562 * 16 14 13 18 18 Si 1.86807 * 119.99525 * 179.97438 * 16 14 13 19 19 H 1.48497 * 109.47098 * 59.99874 * 18 16 14 20 20 H 1.48497 * 109.47238 * 180.02562 * 18 16 14 21 21 H 1.48501 * 109.47072 * 299.99809 * 18 16 14 22 22 C 1.47151 * 120.98296 * 179.97438 * 4 2 1 23 23 H 1.09005 * 109.47429 * 269.99955 * 1 2 3 24 24 H 1.09002 * 109.47306 * 29.99819 * 1 2 3 25 25 H 1.09003 * 109.47359 * 149.99853 * 1 2 3 26 26 H 1.08996 * 109.68104 * 110.78398 * 5 4 2 27 27 H 1.09000 * 109.71269 * 350.25368 * 5 4 2 28 28 H 1.09000 * 109.51037 * 187.77023 * 6 5 4 29 29 H 1.09008 * 109.50994 * 67.62372 * 6 5 4 30 30 H 1.09001 * 109.47327 * 60.00194 * 12 10 8 31 31 H 1.09001 * 109.47638 * 180.02562 * 12 10 8 32 32 H 1.09005 * 109.47378 * 300.00602 * 12 10 8 33 33 H 0.97001 * 120.00119 * 24.99668 * 13 10 8 34 34 H 0.97006 * 119.99610 * 179.97438 * 17 16 14 35 35 H 1.09006 * 109.67681 * 9.76712 * 22 4 2 36 36 H 1.08997 * 109.68366 * 249.21397 * 22 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1808 -1.1673 0.0005 5 6 1.4670 -2.4541 0.0005 6 6 2.0411 -3.3253 1.1236 7 8 3.4631 -3.3881 0.9906 8 6 4.1197 -2.1252 1.1236 9 1 3.8708 -1.6854 2.0894 10 6 5.6337 -2.3238 1.0273 11 1 6.1289 -1.3528 1.0379 12 6 5.9706 -3.0540 -0.2742 13 7 6.0952 -3.1197 2.1674 14 6 7.3912 -3.0133 2.5969 15 1 8.0728 -2.3423 2.0954 16 6 7.8283 -3.7671 3.6774 17 7 6.9974 -4.5844 4.2888 18 14 9.5964 -3.6224 4.2628 19 1 9.8702 -2.2206 4.6690 20 1 9.8092 -4.5249 5.4227 21 1 10.5154 -4.0072 3.1617 22 6 3.6521 -1.1925 0.0000 23 1 -0.3634 0.0000 1.0277 24 1 -0.3634 0.8900 -0.5138 25 1 -0.3634 -0.8900 -0.5139 26 1 1.6078 -2.9520 -0.9588 27 1 0.4042 -2.2850 0.1738 28 1 1.6241 -4.3300 1.0542 29 1 1.7846 -2.8898 2.0894 30 1 5.6272 -2.4619 -1.1225 31 1 7.0492 -3.1959 -0.3426 32 1 5.4753 -4.0250 -0.2847 33 1 5.4829 -3.7220 2.6181 34 1 7.3031 -5.1114 5.0437 35 1 4.0366 -0.1873 0.1733 36 1 4.0126 -1.5636 -0.9594 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001734170708.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:16:50 Heat of formation + Delta-G solvation = -62.672846 kcal Electronic energy + Delta-G solvation = -18180.726082 eV Core-core repulsion = 15279.642552 eV Total energy + Delta-G solvation = -2901.083530 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 242.142 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.31278 -38.34356 -35.52000 -34.52934 -32.55219 -30.78767 -29.75725 -28.38862 -26.77510 -24.63260 -23.45156 -22.29143 -19.67726 -19.22425 -17.39352 -17.08553 -16.39604 -15.76481 -15.60054 -15.08051 -14.57145 -14.39830 -13.80422 -13.63523 -13.30392 -13.03575 -12.79828 -12.47190 -12.25512 -12.04895 -11.86833 -11.31069 -11.11784 -10.82082 -10.71264 -10.52692 -10.29040 -10.06673 -9.82733 -9.77128 -9.62191 -8.87342 -8.48718 -6.91699 -5.71766 -3.00479 2.52985 2.85447 3.47150 3.51376 3.52360 3.97509 4.43731 4.60110 4.75466 4.84842 4.93943 5.08803 5.17013 5.22891 5.36080 5.38942 5.59427 5.63350 5.68420 5.72344 5.84309 6.00120 6.01086 6.22387 6.37804 6.48020 6.67088 6.84017 7.17513 7.29396 7.48285 7.73153 8.06495 8.46541 9.58327 10.15930 10.52689 11.50704 Molecular weight = 242.14amu Principal moments of inertia in cm(-1) A = 0.039871 B = 0.005418 C = 0.005229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 702.100483 B = 5166.356425 C = 5353.314030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.511 3.489 3 O -0.548 6.548 4 N -0.615 5.615 5 C 0.070 3.930 6 C 0.045 3.955 7 O -0.358 6.358 8 C 0.076 3.924 9 H 0.063 0.937 10 C 0.184 3.816 11 H 0.059 0.941 12 C -0.162 4.162 13 N -0.719 5.719 14 C -0.240 4.240 15 H 0.070 0.930 16 C -0.012 4.012 17 N -0.932 5.932 18 Si 0.906 3.094 19 H -0.286 1.286 20 H -0.291 1.291 21 H -0.286 1.286 22 C 0.081 3.919 23 H 0.093 0.907 24 H 0.092 0.908 25 H 0.081 0.919 26 H 0.077 0.923 27 H 0.093 0.907 28 H 0.104 0.896 29 H 0.053 0.947 30 H 0.034 0.966 31 H 0.052 0.948 32 H 0.056 0.944 33 H 0.389 0.611 34 H 0.255 0.745 35 H 0.099 0.901 36 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.773 4.060 -9.542 18.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.300 3.700 3 O -0.426 6.426 4 N -0.350 5.350 5 C -0.053 4.053 6 C -0.033 4.033 7 O -0.276 6.276 8 C 0.017 3.983 9 H 0.081 0.919 10 C 0.074 3.926 11 H 0.077 0.923 12 C -0.222 4.222 13 N -0.361 5.361 14 C -0.371 4.371 15 H 0.088 0.912 16 C -0.208 4.208 17 N -0.580 5.580 18 Si 0.737 3.263 19 H -0.213 1.213 20 H -0.217 1.217 21 H -0.213 1.213 22 C -0.042 4.042 23 H 0.112 0.888 24 H 0.110 0.890 25 H 0.100 0.900 26 H 0.096 0.904 27 H 0.111 0.889 28 H 0.122 0.878 29 H 0.071 0.929 30 H 0.053 0.947 31 H 0.071 0.929 32 H 0.075 0.925 33 H 0.223 0.777 34 H 0.065 0.935 35 H 0.117 0.883 36 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -14.173 4.490 -9.521 17.654 hybrid contribution 0.536 -0.090 0.540 0.766 sum -13.637 4.400 -8.981 16.912 Atomic orbital electron populations 1.21950 0.91929 1.04722 1.04780 1.20809 0.90580 0.83015 0.75619 1.90715 1.70698 1.30962 1.50229 1.48270 1.07381 1.05919 1.73393 1.22562 0.97202 0.84503 1.01031 1.22908 0.83339 1.00408 0.96635 1.88102 1.16958 1.29698 1.92867 1.22980 0.95106 0.83729 0.96503 0.91907 1.20198 0.87577 0.95400 0.89449 0.92299 1.22410 1.01501 1.01086 0.97203 1.42347 1.10846 1.49452 1.33419 1.19214 0.87674 1.19863 1.10347 0.91216 1.24728 0.97890 0.99469 0.98761 1.69668 1.34279 1.29764 1.24290 0.86281 0.84764 0.77210 0.78005 1.21293 1.21735 1.21288 1.22492 0.78794 1.02378 1.00513 0.88820 0.88956 0.89983 0.90437 0.88873 0.87845 0.92864 0.94680 0.92893 0.92455 0.77692 0.93529 0.88285 0.90175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.39 9.44 36.00 0.34 -1.05 16 2 C 0.51 6.75 7.82 -10.99 -0.09 6.66 16 3 O -0.55 -9.63 16.57 5.56 0.09 -9.53 16 4 N -0.61 -7.92 3.02 -172.26 -0.52 -8.44 16 5 C 0.07 0.68 6.39 -3.53 -0.02 0.66 16 6 C 0.05 0.54 6.98 37.31 0.26 0.80 16 7 O -0.36 -6.06 9.24 -35.23 -0.33 -6.39 16 8 C 0.08 1.33 2.61 -26.56 -0.07 1.26 16 9 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 10 C 0.18 3.75 2.77 -67.93 -0.19 3.57 16 11 H 0.06 1.20 8.08 -51.93 -0.42 0.78 16 12 C -0.16 -3.02 9.06 37.15 0.34 -2.69 16 13 N -0.72 -18.44 5.10 -53.43 -0.27 -18.72 16 14 C -0.24 -6.74 9.93 -15.06 -0.15 -6.89 16 15 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 16 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 17 N -0.93 -28.52 13.06 55.49 0.72 -27.80 16 18 Si 0.91 22.63 29.55 -169.99 -5.02 17.60 16 19 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 20 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 21 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 22 C 0.08 1.21 5.83 -3.52 -0.02 1.19 16 23 H 0.09 0.64 8.14 -51.93 -0.42 0.21 16 24 H 0.09 0.70 8.14 -51.93 -0.42 0.27 16 25 H 0.08 0.46 6.28 -51.93 -0.33 0.13 16 26 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.09 0.59 5.68 -51.93 -0.30 0.30 16 28 H 0.10 1.01 8.14 -51.93 -0.42 0.58 16 29 H 0.05 0.65 8.14 -51.92 -0.42 0.23 16 30 H 0.03 0.54 6.42 -51.93 -0.33 0.21 16 31 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 32 H 0.06 1.12 7.56 -51.93 -0.39 0.73 16 33 H 0.39 10.74 7.58 -40.82 -0.31 10.43 16 34 H 0.25 7.56 8.31 -40.82 -0.34 7.22 16 35 H 0.10 1.59 7.08 -51.93 -0.37 1.23 16 36 H 0.08 1.15 6.28 -51.93 -0.33 0.82 16 LS Contribution 292.29 15.07 4.40 4.40 Total: -1.00 -33.82 292.29 -5.89 -39.71 By element: Atomic # 1 Polarization: 11.39 SS G_CDS: -5.28 Total: 6.11 kcal Atomic # 6 Polarization: 2.74 SS G_CDS: 0.31 Total: 3.05 kcal Atomic # 7 Polarization: -54.89 SS G_CDS: -0.07 Total: -54.95 kcal Atomic # 8 Polarization: -15.69 SS G_CDS: -0.23 Total: -15.92 kcal Atomic # 14 Polarization: 22.63 SS G_CDS: -5.02 Total: 17.60 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -33.82 -5.89 -39.71 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734170708.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.962 kcal (2) G-P(sol) polarization free energy of solvation -33.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.711 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds