Wall clock time and date at job start Thu Apr 9 2020 12:16:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 O 1.21278 * 120.00371 * 2 1 4 4 N 1.34784 * 119.99898 * 179.97438 * 2 1 3 5 5 C 1.47154 * 120.98243 * 0.02562 * 4 2 1 6 6 C 1.53290 * 108.38143 * 230.50937 * 5 4 2 7 7 O 1.42961 * 109.22658 * 307.69928 * 6 5 4 8 8 C 1.42957 * 114.16605 * 62.57980 * 7 6 5 9 9 H 1.09002 * 109.51218 * 57.34557 * 8 7 6 10 10 C 1.53000 * 109.51036 * 177.44923 * 8 7 6 11 11 H 1.09005 * 109.47255 * 174.90348 * 10 8 7 12 12 C 1.52991 * 109.47583 * 54.89670 * 10 8 7 13 13 N 1.46501 * 109.47004 * 294.89720 * 10 8 7 14 14 C 1.36942 * 120.00186 * 205.00272 * 13 10 8 15 15 H 1.07995 * 119.99598 * 0.02562 * 14 13 10 16 16 C 1.38811 * 119.99650 * 179.97438 * 14 13 10 17 17 N 1.31612 * 120.00386 * 0.02562 * 16 14 13 18 18 Si 1.86807 * 119.99525 * 179.97438 * 16 14 13 19 19 H 1.48497 * 109.47098 * 59.99874 * 18 16 14 20 20 H 1.48497 * 109.47238 * 180.02562 * 18 16 14 21 21 H 1.48501 * 109.47072 * 299.99809 * 18 16 14 22 22 C 1.47151 * 120.98296 * 179.97438 * 4 2 1 23 23 H 1.09005 * 109.47429 * 269.99955 * 1 2 3 24 24 H 1.09002 * 109.47306 * 29.99819 * 1 2 3 25 25 H 1.09003 * 109.47359 * 149.99853 * 1 2 3 26 26 H 1.08996 * 109.68104 * 110.78398 * 5 4 2 27 27 H 1.09000 * 109.71269 * 350.25368 * 5 4 2 28 28 H 1.09000 * 109.51037 * 187.77023 * 6 5 4 29 29 H 1.09008 * 109.50994 * 67.62372 * 6 5 4 30 30 H 1.09001 * 109.47327 * 60.00194 * 12 10 8 31 31 H 1.09001 * 109.47638 * 180.02562 * 12 10 8 32 32 H 1.09005 * 109.47378 * 300.00602 * 12 10 8 33 33 H 0.97001 * 120.00119 * 24.99668 * 13 10 8 34 34 H 0.97006 * 119.99610 * 179.97438 * 17 16 14 35 35 H 1.09006 * 109.67681 * 9.76712 * 22 4 2 36 36 H 1.08997 * 109.68366 * 249.21397 * 22 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1808 -1.1673 0.0005 5 6 1.4670 -2.4541 0.0005 6 6 2.0411 -3.3253 1.1236 7 8 3.4631 -3.3881 0.9906 8 6 4.1197 -2.1252 1.1236 9 1 3.8708 -1.6854 2.0894 10 6 5.6337 -2.3238 1.0273 11 1 6.1289 -1.3528 1.0379 12 6 5.9706 -3.0540 -0.2742 13 7 6.0952 -3.1197 2.1674 14 6 7.3912 -3.0133 2.5969 15 1 8.0728 -2.3423 2.0954 16 6 7.8283 -3.7671 3.6774 17 7 6.9974 -4.5844 4.2888 18 14 9.5964 -3.6224 4.2628 19 1 9.8702 -2.2206 4.6690 20 1 9.8092 -4.5249 5.4227 21 1 10.5154 -4.0072 3.1617 22 6 3.6521 -1.1925 0.0000 23 1 -0.3634 0.0000 1.0277 24 1 -0.3634 0.8900 -0.5138 25 1 -0.3634 -0.8900 -0.5139 26 1 1.6078 -2.9520 -0.9588 27 1 0.4042 -2.2850 0.1738 28 1 1.6241 -4.3300 1.0542 29 1 1.7846 -2.8898 2.0894 30 1 5.6272 -2.4619 -1.1225 31 1 7.0492 -3.1959 -0.3426 32 1 5.4753 -4.0250 -0.2847 33 1 5.4829 -3.7220 2.6181 34 1 7.3031 -5.1114 5.0437 35 1 4.0366 -0.1873 0.1733 36 1 4.0126 -1.5636 -0.9594 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001734170708.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:16:49 Heat of formation + Delta-G solvation = -87.965766 kcal Electronic energy + Delta-G solvation = -18181.822865 eV Core-core repulsion = 15279.642552 eV Total energy + Delta-G solvation = -2902.180313 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 242.142 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.41101 -39.56609 -37.12396 -35.74760 -34.35992 -32.19592 -30.74762 -29.96083 -28.00125 -26.33187 -24.84547 -23.62128 -21.22153 -20.22929 -19.29445 -18.22642 -17.65359 -16.99001 -16.65064 -16.56380 -16.04820 -15.82422 -15.25449 -15.02599 -14.57258 -14.33816 -14.03183 -13.78880 -13.47344 -13.14655 -13.00976 -12.80476 -12.69041 -12.44205 -12.37022 -12.22065 -11.83838 -11.64664 -11.58071 -11.18036 -10.92872 -10.82855 -9.60181 -9.01235 -7.92356 -5.21239 1.47361 1.50682 1.54303 1.56638 1.88592 2.56976 2.79712 3.41213 3.54221 3.65398 3.92647 3.99739 4.02830 4.14831 4.31099 4.35527 4.45603 4.50481 4.59107 4.63214 4.66210 4.78698 4.85554 4.97454 5.07282 5.09103 5.23225 5.31045 5.51039 5.61056 6.25679 6.29181 6.34891 7.07197 7.35453 8.10671 8.36012 9.31069 Molecular weight = 242.14amu Principal moments of inertia in cm(-1) A = 0.039871 B = 0.005418 C = 0.005229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 702.100483 B = 5166.356425 C = 5353.314030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.502 3.498 3 O -0.602 6.602 4 N -0.617 5.617 5 C 0.074 3.926 6 C 0.034 3.966 7 O -0.384 6.384 8 C 0.092 3.908 9 H 0.037 0.963 10 C 0.175 3.825 11 H 0.056 0.944 12 C -0.147 4.147 13 N -0.732 5.732 14 C -0.243 4.243 15 H 0.076 0.924 16 C -0.075 4.075 17 N -0.970 5.970 18 Si 0.973 3.027 19 H -0.279 1.279 20 H -0.295 1.295 21 H -0.278 1.278 22 C 0.090 3.910 23 H 0.110 0.890 24 H 0.097 0.903 25 H 0.115 0.885 26 H 0.093 0.907 27 H 0.136 0.864 28 H 0.130 0.870 29 H 0.047 0.953 30 H 0.069 0.931 31 H 0.036 0.964 32 H 0.047 0.953 33 H 0.375 0.625 34 H 0.250 0.750 35 H 0.082 0.918 36 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.278 4.100 -10.884 20.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.293 3.707 3 O -0.483 6.483 4 N -0.351 5.351 5 C -0.048 4.048 6 C -0.043 4.043 7 O -0.303 6.303 8 C 0.033 3.967 9 H 0.055 0.945 10 C 0.066 3.934 11 H 0.074 0.926 12 C -0.207 4.207 13 N -0.373 5.373 14 C -0.374 4.374 15 H 0.094 0.906 16 C -0.267 4.267 17 N -0.620 5.620 18 Si 0.802 3.198 19 H -0.205 1.205 20 H -0.221 1.221 21 H -0.204 1.204 22 C -0.034 4.034 23 H 0.128 0.872 24 H 0.116 0.884 25 H 0.133 0.867 26 H 0.111 0.889 27 H 0.154 0.846 28 H 0.148 0.852 29 H 0.065 0.935 30 H 0.088 0.912 31 H 0.055 0.945 32 H 0.066 0.934 33 H 0.207 0.793 34 H 0.059 0.941 35 H 0.100 0.900 36 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -15.707 4.537 -10.911 19.656 hybrid contribution 0.915 -0.100 0.917 1.299 sum -14.793 4.437 -9.994 18.396 Atomic orbital electron populations 1.21994 0.87336 1.06663 1.06369 1.21839 0.92704 0.82049 0.74083 1.90691 1.72178 1.32844 1.52636 1.48423 1.06429 1.07386 1.72868 1.22781 0.98895 0.82405 1.00681 1.23260 0.80816 1.02661 0.97518 1.88048 1.19951 1.29231 1.93024 1.22528 0.93308 0.84596 0.96314 0.94463 1.20433 0.89866 0.94547 0.88585 0.92630 1.22199 1.00332 1.00845 0.97289 1.42513 1.09966 1.49914 1.34873 1.19622 0.88801 1.19055 1.09966 0.90622 1.25546 1.01970 0.99790 0.99399 1.69833 1.36149 1.31110 1.24933 0.85222 0.80064 0.77219 0.77318 1.20481 1.22142 1.20374 1.22190 0.80930 1.00601 0.99684 0.87173 0.88424 0.86691 0.88886 0.84622 0.85235 0.93495 0.91203 0.94461 0.93405 0.79271 0.94084 0.89969 0.89097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.01 9.44 71.23 0.67 -1.34 16 2 C 0.50 12.32 7.82 87.65 0.69 13.01 16 3 O -0.60 -21.03 16.57 -3.02 -0.05 -21.08 16 4 N -0.62 -14.62 3.02 -817.29 -2.47 -17.09 16 5 C 0.07 1.16 6.39 86.35 0.55 1.71 16 6 C 0.03 0.75 6.98 72.08 0.50 1.26 16 7 O -0.38 -12.75 9.24 -148.98 -1.38 -14.13 16 8 C 0.09 3.23 2.61 30.70 0.08 3.31 16 9 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 10 C 0.17 7.20 2.77 44.99 0.12 7.32 16 11 H 0.06 2.31 8.08 -2.38 -0.02 2.29 16 12 C -0.15 -5.40 9.06 71.98 0.65 -4.75 16 13 N -0.73 -38.48 5.10 -322.95 -1.65 -40.13 16 14 C -0.24 -13.85 9.93 84.03 0.83 -13.01 16 15 H 0.08 4.13 7.83 -2.91 -0.02 4.10 16 16 C -0.07 -4.40 5.50 84.86 0.47 -3.93 16 17 N -0.97 -60.71 13.06 21.65 0.28 -60.43 16 18 Si 0.97 47.04 29.55 68.60 2.03 49.06 16 19 H -0.28 -12.99 7.11 99.48 0.71 -12.29 16 20 H -0.30 -14.33 7.11 99.48 0.71 -13.63 16 21 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 22 C 0.09 2.63 5.83 86.37 0.50 3.13 16 23 H 0.11 1.06 8.14 -2.38 -0.02 1.04 16 24 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 25 H 0.11 0.64 6.28 -2.39 -0.01 0.62 16 26 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 27 H 0.14 0.99 5.68 -2.39 -0.01 0.97 16 28 H 0.13 2.14 8.14 -2.39 -0.02 2.12 16 29 H 0.05 1.08 8.14 -2.38 -0.02 1.06 16 30 H 0.07 2.05 6.42 -2.39 -0.02 2.04 16 31 H 0.04 1.45 8.14 -2.39 -0.02 1.44 16 32 H 0.05 1.84 7.56 -2.38 -0.02 1.82 16 33 H 0.38 21.44 7.58 -92.71 -0.70 20.73 16 34 H 0.25 15.19 8.31 -92.70 -0.77 14.42 16 35 H 0.08 2.69 7.08 -2.38 -0.02 2.67 16 36 H 0.09 2.44 6.28 -2.39 -0.01 2.42 16 Total: -1.00 -75.86 292.29 2.22 -73.64 By element: Atomic # 1 Polarization: 23.08 SS G_CDS: 0.38 Total: 23.45 kcal Atomic # 6 Polarization: 1.63 SS G_CDS: 5.07 Total: 6.71 kcal Atomic # 7 Polarization: -113.82 SS G_CDS: -3.83 Total: -117.65 kcal Atomic # 8 Polarization: -33.79 SS G_CDS: -1.43 Total: -35.22 kcal Atomic # 14 Polarization: 47.04 SS G_CDS: 2.03 Total: 49.06 kcal Total: -75.86 2.22 -73.64 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734170708.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.325 kcal (2) G-P(sol) polarization free energy of solvation -75.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.641 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds