Wall clock time and date at job start Thu Apr 9 2020 12:18:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31380 * 1 3 3 Si 1.86797 * 120.00038 * 2 1 4 4 H 1.48500 * 109.47045 * 239.99864 * 3 2 1 5 5 H 1.48507 * 109.47234 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.46952 * 119.99628 * 3 2 1 7 7 C 1.39034 * 119.99832 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99695 * 180.02562 * 7 2 1 9 9 N 1.36892 * 120.00135 * 359.97438 * 7 2 1 10 10 C 1.34769 * 119.99992 * 179.97438 * 9 7 2 11 11 O 1.21598 * 120.00445 * 0.02562 * 10 9 7 12 12 C 1.47613 * 119.99889 * 180.02562 * 10 9 7 13 13 C 1.39736 * 120.12182 * 359.97438 * 12 10 9 14 14 C 1.37810 * 119.89945 * 179.97438 * 13 12 10 15 15 C 1.38655 * 120.13840 * 0.02562 * 14 13 12 16 16 F 1.35109 * 119.87634 * 180.27411 * 15 14 13 17 17 C 1.38755 * 120.24399 * 0.02562 * 15 14 13 18 18 Cl 1.73595 * 119.94894 * 179.97438 * 17 15 14 19 19 C 1.37942 * 120.10073 * 359.97438 * 17 15 14 20 20 H 0.97003 * 119.99773 * 0.02562 * 1 2 3 21 21 H 0.97004 * 119.99587 * 0.02562 * 9 7 2 22 22 H 1.08003 * 120.04745 * 0.02562 * 13 12 10 23 23 H 1.08001 * 119.92897 * 180.02562 * 14 13 12 24 24 H 1.08001 * 120.07244 * 179.97438 * 19 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3138 0.0000 0.0000 3 14 2.2478 1.6177 0.0000 4 1 3.1016 1.6963 -1.2125 5 1 1.2828 2.7465 -0.0006 6 1 3.1015 1.6964 1.2126 7 6 2.0089 -1.2041 0.0005 8 1 3.0889 -1.2041 0.0010 9 7 1.3245 -2.3896 0.0016 10 6 1.9983 -3.5567 0.0016 11 8 3.2143 -3.5568 0.0011 12 6 1.2602 -4.8351 0.0022 13 6 -0.1371 -4.8380 0.0033 14 6 -0.8216 -6.0341 0.0032 15 6 -0.1266 -7.2339 0.0027 16 9 -0.8030 -8.4035 -0.0029 17 6 1.2610 -7.2378 0.0027 18 17 2.1234 -8.7444 0.0027 19 6 1.9561 -6.0464 0.0027 20 1 -0.4850 0.8401 -0.0004 21 1 0.3544 -2.3895 0.0016 22 1 -0.6799 -3.9043 0.0033 23 1 -1.9016 -6.0370 0.0037 24 1 3.0361 -6.0500 0.0031 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082533708.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:18:03 Heat of formation + Delta-G solvation = -85.886504 kcal Electronic energy + Delta-G solvation = -14411.139494 eV Core-core repulsion = 11456.913353 eV Total energy + Delta-G solvation = -2954.226141 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 243.020 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -50.07266 -40.95597 -39.12104 -37.58468 -36.16635 -33.56371 -32.08808 -31.61944 -27.27991 -24.62583 -24.09258 -21.48532 -20.28578 -18.96797 -18.35132 -17.53254 -16.87309 -16.77690 -16.24743 -15.81973 -15.57019 -15.03661 -14.84168 -14.50348 -14.00192 -13.85052 -13.56251 -12.98729 -12.64590 -12.55025 -12.37718 -12.11874 -12.06963 -11.60374 -10.61223 -10.17874 -10.13514 -9.81881 -8.58359 -6.01992 -0.46443 -0.05480 0.84183 1.40351 1.44048 1.54528 1.81014 2.25809 2.58938 2.90071 2.96718 3.23686 3.54802 3.93812 3.99410 4.03972 4.45839 4.70044 4.74842 4.96852 5.16392 5.33686 5.51064 5.89166 6.45778 6.99407 7.37956 7.94875 8.57912 Molecular weight = 243.02amu Principal moments of inertia in cm(-1) A = 0.049492 B = 0.005376 C = 0.004857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 565.617312 B = 5207.399060 C = 5763.172695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C -0.005 4.005 3 Si 0.998 3.002 4 H -0.270 1.270 5 H -0.267 1.267 6 H -0.270 1.270 7 C -0.337 4.337 8 H 0.086 0.914 9 N -0.543 5.543 10 C 0.461 3.539 11 O -0.635 6.635 12 C -0.113 4.113 13 C -0.063 4.063 14 C -0.124 4.124 15 C 0.114 3.886 16 F -0.124 7.124 17 C -0.080 4.080 18 Cl -0.044 7.044 19 C -0.045 4.045 20 H 0.285 0.715 21 H 0.401 0.599 22 H 0.153 0.847 23 H 0.186 0.814 24 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.921 -10.719 0.010 11.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.207 4.207 3 Si 0.821 3.179 4 H -0.195 1.195 5 H -0.191 1.191 6 H -0.195 1.195 7 C -0.466 4.466 8 H 0.104 0.896 9 N -0.177 5.177 10 C 0.251 3.749 11 O -0.525 6.525 12 C -0.117 4.117 13 C -0.082 4.082 14 C -0.142 4.142 15 C 0.093 3.907 16 F -0.102 7.102 17 C -0.107 4.107 18 Cl -0.016 7.016 19 C -0.066 4.066 20 H 0.094 0.906 21 H 0.237 0.763 22 H 0.171 0.829 23 H 0.203 0.797 24 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -4.249 -10.692 0.010 11.505 hybrid contribution 0.105 0.435 0.000 0.447 sum -4.144 -10.257 0.010 11.063 Atomic orbital electron populations 1.69616 1.06913 1.30203 1.47523 1.26160 0.96622 1.02630 0.95328 0.84907 0.77836 0.76017 0.79147 1.19538 1.19123 1.19530 1.19778 0.93222 0.83602 1.50017 0.89629 1.41861 1.09739 1.04565 1.61571 1.18183 0.87273 0.84260 0.85205 1.90578 1.15119 1.87741 1.59061 1.20038 0.94523 0.92873 1.04287 1.21494 0.91985 0.99672 0.95054 1.21306 1.02762 0.88554 1.01577 1.17619 0.87621 0.82628 1.02831 1.91540 1.79575 1.45543 1.93575 1.20799 0.91108 0.88719 1.10106 1.98370 1.76466 1.29705 1.97011 1.20894 1.01162 0.88778 0.95737 0.90570 0.76319 0.82923 0.79676 0.84101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -45.41 13.05 21.68 0.28 -45.13 14 2 C -0.01 -0.26 5.50 84.95 0.47 0.21 14 3 Si 1.00 40.36 29.55 68.60 2.03 42.38 14 4 H -0.27 -10.86 7.11 99.48 0.71 -10.15 14 5 H -0.27 -10.07 7.11 99.48 0.71 -9.37 14 6 H -0.27 -10.86 7.11 99.48 0.71 -10.15 14 7 C -0.34 -18.35 9.68 84.09 0.81 -17.53 14 8 H 0.09 4.96 7.15 -2.91 -0.02 4.94 14 9 N -0.54 -27.02 5.23 -309.84 -1.62 -28.64 14 10 C 0.46 22.28 7.72 86.72 0.67 22.95 14 11 O -0.64 -35.55 15.92 -4.02 -0.06 -35.61 14 12 C -0.11 -4.21 5.87 -20.09 -0.12 -4.32 14 13 C -0.06 -1.82 9.54 22.53 0.21 -1.61 14 14 C -0.12 -2.86 10.01 22.27 0.22 -2.64 14 15 C 0.11 2.94 7.28 22.49 0.16 3.10 14 16 F -0.12 -3.04 16.83 44.97 0.76 -2.29 14 17 C -0.08 -2.30 6.32 22.32 0.14 -2.16 14 18 Cl -0.04 -1.16 28.60 -2.72 -0.08 -1.24 14 19 C -0.05 -1.55 9.37 22.55 0.21 -1.33 14 20 H 0.28 13.30 8.31 -92.71 -0.77 12.53 14 21 H 0.40 18.27 5.92 -92.71 -0.55 17.73 14 22 H 0.15 4.19 6.40 -2.91 -0.02 4.17 14 23 H 0.19 2.88 8.06 -2.91 -0.02 2.85 14 24 H 0.14 5.05 7.65 -2.91 -0.02 5.03 14 Total: -1.00 -61.09 245.27 4.81 -56.29 By element: Atomic # 1 Polarization: 16.86 SS G_CDS: 0.72 Total: 17.57 kcal Atomic # 6 Polarization: -6.12 SS G_CDS: 2.79 Total: -3.34 kcal Atomic # 7 Polarization: -72.43 SS G_CDS: -1.34 Total: -73.77 kcal Atomic # 8 Polarization: -35.55 SS G_CDS: -0.06 Total: -35.61 kcal Atomic # 9 Polarization: -3.04 SS G_CDS: 0.76 Total: -2.29 kcal Atomic # 14 Polarization: 40.36 SS G_CDS: 2.03 Total: 42.38 kcal Atomic # 17 Polarization: -1.16 SS G_CDS: -0.08 Total: -1.24 kcal Total: -61.09 4.81 -56.29 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082533708.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.600 kcal (2) G-P(sol) polarization free energy of solvation -61.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.287 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds