Wall clock time and date at job start Thu Apr 9 2020 12:17:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42903 * 114.00047 * 2 1 4 4 C 1.53000 * 109.47362 * 180.02562 * 3 2 1 5 5 N 1.46905 * 109.47172 * 65.01886 * 4 3 2 6 6 C 1.46844 * 110.99913 * 200.01588 * 5 4 3 7 7 C 1.53037 * 109.52235 * 174.16373 * 6 5 4 8 8 C 1.53114 * 109.28088 * 59.17742 * 7 6 5 9 9 N 1.46897 * 109.52507 * 182.44157 * 8 7 6 10 10 C 1.46898 * 111.00093 * 274.68310 * 9 8 7 11 11 C 1.50702 * 109.47183 * 180.02562 * 10 9 8 12 12 H 1.07996 * 119.99902 * 359.97438 * 11 10 9 13 13 C 1.37871 * 119.99842 * 180.02562 * 11 10 9 14 14 N 1.31512 * 120.00259 * 359.97438 * 13 11 10 15 15 Si 1.86801 * 119.99935 * 179.97438 * 13 11 10 16 16 H 1.48504 * 109.46971 * 89.99728 * 15 13 11 17 17 H 1.48499 * 109.47422 * 209.99647 * 15 13 11 18 18 H 1.48504 * 109.47199 * 329.99732 * 15 13 11 19 19 C 1.53126 * 109.16153 * 302.34790 * 8 7 6 20 20 C 1.46849 * 110.99664 * 75.80542 * 5 4 3 21 21 H 1.08997 * 109.46881 * 179.97438 * 1 2 3 22 22 H 1.08994 * 109.47210 * 300.00048 * 1 2 3 23 23 H 1.09000 * 109.47219 * 59.99941 * 1 2 3 24 24 H 1.09001 * 109.47158 * 59.99546 * 3 2 1 25 25 H 1.09004 * 109.47020 * 299.99831 * 3 2 1 26 26 H 1.08995 * 109.47279 * 185.01922 * 4 3 2 27 27 H 1.09004 * 109.46954 * 305.02200 * 4 3 2 28 28 H 1.09001 * 109.46077 * 294.18012 * 6 5 4 29 29 H 1.08998 * 109.46144 * 54.14762 * 6 5 4 30 30 H 1.09006 * 109.50047 * 299.23638 * 7 6 5 31 31 H 1.08993 * 109.50440 * 179.12232 * 7 6 5 32 32 H 1.09003 * 109.57206 * 62.27954 * 8 7 6 33 33 H 1.00907 * 110.99885 * 150.73023 * 9 8 7 34 34 H 1.09002 * 109.47148 * 299.99838 * 10 9 8 35 35 H 1.08999 * 109.47152 * 60.00181 * 10 9 8 36 36 H 0.97008 * 120.00163 * 180.02562 * 14 13 11 37 37 H 1.08995 * 109.50214 * 297.71013 * 19 8 7 38 38 H 1.09002 * 109.50549 * 177.59308 * 19 8 7 39 39 H 1.08995 * 109.46376 * 305.85541 * 20 5 4 40 40 H 1.08996 * 109.46418 * 65.83392 * 20 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 -0.0006 5 7 3.9769 0.5632 -1.2564 6 6 5.3267 0.0014 -1.1194 7 6 5.6949 -0.7617 -2.3938 8 6 5.6383 0.1935 -3.5892 9 7 5.9337 -0.5464 -4.8233 10 6 7.3823 -0.6330 -5.0512 11 6 7.6460 -1.3965 -6.3235 12 1 6.8200 -1.7795 -6.9044 13 6 8.9416 -1.6069 -6.7453 14 7 9.9474 -1.1409 -6.0377 15 14 9.2684 -2.5539 -8.3219 16 1 9.3125 -1.6090 -9.4668 17 1 10.5695 -3.2615 -8.2138 18 1 8.1830 -3.5440 -8.5387 19 6 4.2360 0.8018 -3.6805 20 6 3.9102 1.5196 -2.3688 21 1 -0.3633 -1.0276 -0.0005 22 1 -0.3633 0.5138 0.8899 23 1 -0.3634 0.5138 -0.8900 24 1 1.6885 1.8464 0.8899 25 1 1.6886 1.8464 -0.8900 26 1 3.9785 2.1765 0.0893 27 1 3.8514 0.5679 0.8407 28 1 6.0416 0.8086 -0.9600 29 1 5.3521 -0.6793 -0.2684 30 1 4.9884 -1.5777 -2.5463 31 1 6.7027 -1.1654 -2.2980 32 1 6.3722 0.9884 -3.4564 33 1 5.4673 -0.1297 -5.6152 34 1 7.7971 0.3713 -5.1381 35 1 7.8518 -1.1488 -4.2136 36 1 10.8590 -1.2886 -6.3346 37 1 3.5066 0.0105 -3.8533 38 1 4.2017 1.5152 -4.5039 39 1 2.9068 1.9416 -2.4252 40 1 4.6318 2.3196 -2.2037 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336746310.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:17:07 Heat of formation + Delta-G solvation = -48.636779 kcal Electronic energy + Delta-G solvation = -17786.367600 eV Core-core repulsion = 15021.725815 eV Total energy + Delta-G solvation = -2764.641786 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.14439 -37.68361 -35.38372 -32.90817 -31.29928 -30.63967 -28.73970 -26.49889 -25.83235 -23.47132 -22.69146 -21.68958 -20.75303 -19.31467 -16.71525 -16.46708 -16.27261 -15.38275 -14.99244 -14.72999 -14.62650 -14.49382 -13.85794 -13.64457 -13.13997 -12.79153 -12.51098 -12.10498 -12.07649 -11.89995 -11.59392 -11.38986 -11.16026 -10.87279 -10.84475 -10.77836 -10.48561 -10.16962 -10.04162 -9.72988 -9.60706 -9.08952 -8.44699 -8.17550 -7.21908 -5.99699 -4.01299 3.34192 3.40098 3.45303 3.69828 3.93683 4.46114 4.86340 4.95123 5.06062 5.07936 5.20324 5.22846 5.26164 5.33817 5.36121 5.38178 5.50874 5.54467 5.62413 5.66178 5.76360 5.85920 6.00716 6.05674 6.22543 6.36446 6.43928 6.65479 6.88317 7.05323 7.23683 7.27053 7.33958 7.47624 7.84268 8.18748 8.47958 8.68625 9.08669 9.63560 11.11460 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.051454 B = 0.003933 C = 0.003839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 544.046200 B = 7117.248354 C = 7290.911427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.372 6.372 3 C 0.068 3.932 4 C 0.054 3.946 5 N -0.528 5.528 6 C 0.060 3.940 7 C -0.101 4.101 8 C 0.087 3.913 9 N -0.685 5.685 10 C 0.195 3.805 11 C -0.513 4.513 12 H 0.062 0.938 13 C 0.055 3.945 14 N -0.899 5.899 15 Si 0.899 3.101 16 H -0.282 1.282 17 H -0.287 1.287 18 H -0.273 1.273 19 C -0.116 4.116 20 C 0.060 3.940 21 H 0.084 0.916 22 H 0.035 0.965 23 H 0.038 0.962 24 H 0.047 0.953 25 H 0.048 0.952 26 H 0.048 0.952 27 H 0.081 0.919 28 H 0.028 0.972 29 H 0.073 0.927 30 H 0.075 0.925 31 H 0.067 0.933 32 H 0.028 0.972 33 H 0.328 0.672 34 H -0.016 1.016 35 H 0.028 0.972 36 H 0.261 0.739 37 H 0.077 0.923 38 H 0.060 0.940 39 H 0.069 0.931 40 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.448 6.825 12.495 21.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.291 6.291 3 C -0.009 4.009 4 C -0.074 4.074 5 N -0.253 5.253 6 C -0.069 4.069 7 C -0.140 4.140 8 C -0.024 4.024 9 N -0.316 5.316 10 C 0.068 3.932 11 C -0.551 4.551 12 H 0.080 0.920 13 C -0.146 4.146 14 N -0.539 5.539 15 Si 0.726 3.274 16 H -0.208 1.208 17 H -0.213 1.213 18 H -0.197 1.197 19 C -0.154 4.154 20 C -0.069 4.069 21 H 0.102 0.898 22 H 0.053 0.947 23 H 0.057 0.943 24 H 0.065 0.935 25 H 0.066 0.934 26 H 0.066 0.934 27 H 0.099 0.901 28 H 0.046 0.954 29 H 0.091 0.909 30 H 0.094 0.906 31 H 0.086 0.914 32 H 0.046 0.954 33 H 0.145 0.855 34 H 0.001 0.999 35 H 0.046 0.954 36 H 0.070 0.930 37 H 0.096 0.904 38 H 0.079 0.921 39 H 0.087 0.913 40 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -15.473 5.650 12.688 20.793 hybrid contribution 0.903 1.407 -0.909 1.903 sum -14.570 7.057 11.780 20.021 Atomic orbital electron populations 1.22707 0.81883 1.02586 0.99393 1.88021 1.18703 1.27179 1.95177 1.22543 0.93726 0.85161 0.99460 1.22109 0.93583 0.98271 0.93435 1.61867 1.25600 1.34504 1.03302 1.22142 0.87589 0.97812 0.99307 1.21542 1.01867 0.98501 0.92044 1.21466 0.94279 0.93873 0.92755 1.60671 1.13803 1.54101 1.02978 1.19580 0.81580 0.95008 0.97020 1.21217 0.92091 1.34554 1.07272 0.91966 1.24993 0.96143 0.96068 0.97439 1.69968 0.98802 1.46341 1.38770 0.86489 0.77600 0.80008 0.83255 1.20782 1.21272 1.19733 1.21758 0.98201 0.99944 0.95505 1.22092 1.00108 0.93114 0.91565 0.89784 0.94688 0.94342 0.93504 0.93394 0.93395 0.90094 0.95424 0.90904 0.90633 0.91435 0.95369 0.85516 0.99875 0.95396 0.92975 0.90384 0.92101 0.91289 0.95320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 11.01 101.05 1.11 1.38 16 2 O -0.37 -4.54 10.65 -35.23 -0.38 -4.92 16 3 C 0.07 0.69 6.13 37.16 0.23 0.91 16 4 C 0.05 0.59 5.39 -3.82 -0.02 0.57 16 5 N -0.53 -7.16 4.53 -234.67 -1.06 -8.23 16 6 C 0.06 0.86 5.43 -3.84 -0.02 0.84 16 7 C -0.10 -1.77 5.59 -26.65 -0.15 -1.92 16 8 C 0.09 1.61 2.56 -67.59 -0.17 1.44 16 9 N -0.69 -15.19 6.30 -107.86 -0.68 -15.86 16 10 C 0.19 5.24 5.24 -4.98 -0.03 5.21 16 11 C -0.51 -14.85 9.32 -34.44 -0.32 -15.18 16 12 H 0.06 1.77 7.81 -52.49 -0.41 1.36 16 13 C 0.05 1.59 5.46 -17.82 -0.10 1.49 16 14 N -0.90 -27.32 13.29 55.43 0.74 -26.58 16 15 Si 0.90 22.04 29.54 -169.99 -5.02 17.02 16 16 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 17 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 18 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 19 C -0.12 -1.76 5.36 -26.65 -0.14 -1.90 16 20 C 0.06 0.78 5.29 -3.83 -0.02 0.76 16 21 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 22 H 0.03 0.25 8.14 -51.93 -0.42 -0.18 16 23 H 0.04 0.31 8.14 -51.93 -0.42 -0.12 16 24 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 25 H 0.05 0.47 6.70 -51.93 -0.35 0.12 16 26 H 0.05 0.46 8.00 -51.93 -0.42 0.05 16 27 H 0.08 0.87 7.79 -51.93 -0.40 0.46 16 28 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.07 0.97 7.93 -51.93 -0.41 0.56 16 30 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 31 H 0.07 1.28 7.54 -51.93 -0.39 0.89 16 32 H 0.03 0.56 7.80 -51.93 -0.41 0.16 16 33 H 0.33 6.94 8.35 -39.29 -0.33 6.61 16 34 H -0.02 -0.47 8.06 -51.93 -0.42 -0.89 16 35 H 0.03 0.81 7.51 -51.93 -0.39 0.42 16 36 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 37 H 0.08 1.25 8.14 -51.93 -0.42 0.82 16 38 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 39 H 0.07 0.80 6.65 -51.93 -0.35 0.45 16 40 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 LS Contribution 318.13 15.07 4.79 4.79 Total: -1.00 -31.47 318.13 -8.45 -39.91 By element: Atomic # 1 Polarization: 7.46 SS G_CDS: -7.21 Total: 0.25 kcal Atomic # 6 Polarization: -6.76 SS G_CDS: 0.37 Total: -6.39 kcal Atomic # 7 Polarization: -49.67 SS G_CDS: -1.01 Total: -50.67 kcal Atomic # 8 Polarization: -4.54 SS G_CDS: -0.38 Total: -4.92 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -31.47 -8.45 -39.91 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336746310.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.722 kcal (2) G-P(sol) polarization free energy of solvation -31.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.915 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds